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Update README.rst #135

Workflow file for this run

# 786
# https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
name: aldy-test
on:
push:
branches: [ master ]
tags:
- '*'
pull_request:
branches: [ master ]
jobs:
build:
runs-on: ubuntu-20.04
strategy:
matrix:
python-version: ['3.7', '3.8', '3.9', '3.10']
steps:
- uses: actions/checkout@v2
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
sudo apt-get install libgfortran4 samtools
python -m pip install --upgrade pip
python -m pip install flake8 pytest pytest-cov codecov black
python -m pip install setuptools wheel twine numpy cython
python -m pip install .
- name: Format with black
run: black aldy
- name: Lint with flake8
run: flake8 aldy
- name: Run Aldy tests
run: |
mkdir -p tmp
cd tmp
aldy test
cd ..
- name: Run code coverage tests
run: |
python setup.py build_ext --inplace
pytest --cov=./ -v aldy
- name: Upload code coverage data
uses: codecov/codecov-action@v1
- name: Build package
run: |
python setup.py sdist
- name: Publish on TestPyPI
if: matrix.python-version == '3.7'
uses: pypa/gh-action-pypi-publish@release/v1
with:
user: __token__
password: ${{ secrets.PYPI_TEST_TOKEN }}
repository_url: https://test.pypi.org/legacy/
skip_existing: true
- name: Publish package
if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags') && matrix.python-version == '3.7'
uses: pypa/gh-action-pypi-publish@release/v1
with:
user: ${{ secrets.PYPI_USERNAME }}
password: ${{ secrets.PYPI_PASSWORD }}