start extracting a cellranger-only configuration subset #838
Workflow file for this run
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| name: Test enclone | |
| on: | |
| pull_request: | |
| push: | |
| branches: | |
| - main | |
| env: | |
| DENY_VERSION: "0.13.9" | |
| RUST_VERSION: "1.71.0" | |
| CARGO_INCREMENTAL: 0 | |
| permissions: | |
| contents: read | |
| # Write permissions are required in order to produce annotations. | |
| checks: write | |
| jobs: | |
| test-mac: | |
| # This job runs on MacOS Catalina | |
| runs-on: macos-latest | |
| steps: | |
| - name: Install protoc | |
| run: brew install protobuf | |
| - name: Install Rust | |
| uses: dtolnay/rust-toolchain@master | |
| with: | |
| toolchain: ${{ env.RUST_VERSION }} | |
| components: rustfmt | |
| # check out master | |
| - name: Checkout enclone master | |
| uses: actions/checkout@master | |
| - uses: Swatinem/rust-cache@v2 | |
| # start the real work | |
| - name: Remove the Cargo target directory | |
| if: github.ref == 'refs/heads/master' | |
| run: cargo clean | |
| - name: build-enclone | |
| run: cargo build | |
| - name: unit tests | |
| run: cargo test -- --nocapture | |
| test-linux: | |
| # This job runs on Linux | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Install protoc | |
| run: sudo apt-get install -y protobuf-compiler | |
| - name: Install Rust | |
| uses: dtolnay/rust-toolchain@master | |
| with: | |
| toolchain: ${{ env.RUST_VERSION }} | |
| components: rustfmt, clippy | |
| # check out | |
| - name: Compute required fetch depth | |
| id: fetch_depth | |
| run: > | |
| echo | |
| "depth=$(("${{github.event.pull_request.commits}}" + 2))" | |
| >> "$GITHUB_OUTPUT" | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: ${{ steps.fetch_depth.outputs.depth }} | |
| # set up caching | |
| - uses: Swatinem/rust-cache@v2 | |
| # start the real work | |
| - name: Check for large files | |
| run: > | |
| git rev-list --objects ${{github.event.pull_request.base.sha}}.. | |
| | git cat-file --batch-check='%(objectname) %(objecttype) %(objectsize) %(rest)' | |
| | awk '$2 == "blob" && $3 >= 1600000 { print substr($1, 1, 7), $3, $4; fail=1 } END { exit fail }' | |
| - name: Remove the Cargo target directory | |
| if: github.ref == 'refs/heads/master' | |
| run: cargo clean | |
| - name: Install cargo-deny | |
| run: | | |
| wget https://github.com/EmbarkStudios/cargo-deny/releases/download/${DENY_VERSION}/cargo-deny-${DENY_VERSION}-x86_64-unknown-linux-musl.tar.gz | |
| tar -xvf cargo-deny-${DENY_VERSION}-x86_64-unknown-linux-musl.tar.gz | |
| mkdir -p ~/bin/ | |
| cp cargo-deny-${DENY_VERSION}-x86_64-unknown-linux-musl/cargo-deny ~/bin/ | |
| rm -r cargo-deny-${DENY_VERSION}-x86_64-unknown-linux-musl* | |
| echo "$HOME/bin" >> $GITHUB_PATH | |
| - name: Check that rustflags from config are still valid so Clippy runs the right lints | |
| run: > | |
| [ -z ${RUSTFLAGS+value} ] && | |
| [ -z ${CARGO_ENCODED_RUSTFLAGS+value} ] | |
| - name: Check Rust formatting | |
| run: cargo fmt -- --check | |
| - name: Deny duplicate dependencies (lib/rust) | |
| run: cargo deny --locked check | |
| - name: Run clippy | |
| uses: 10XGenomics/clippy-check@main | |
| with: | |
| args: --all-targets --locked -- | |
| - name: build-enclone | |
| run: cargo build | |
| - name: unit tests | |
| run: cargo test -- --nocapture |