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Delete dead chain_brief option.
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macklin-10x committed Apr 18, 2024
1 parent 7e84780 commit 35f3604
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Showing 3 changed files with 0 additions and 3 deletions.
1 change: 0 additions & 1 deletion enclone/src/UNDOC_OPTIONS
Original file line number Diff line number Diff line change
Expand Up @@ -48,7 +48,6 @@ Optional arguments governing input and output files:
Optional arguments that control printing of individual clonotypes:

- white = percent of sequences implicated in whitelist expansion.
- CHAIN_BRIEF: show abbreviated chain column headers
- DEBUG_TABLE_PRINTING: add print lines to help debug printing of tables.
- NOTE_SIMPLE: note if the first sequence for the chain is simple, in the sense that it exactly
equals the concatenation of the right-truncated V with the full J segment.
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1 change: 0 additions & 1 deletion enclone_args/src/proc_args.rs
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Expand Up @@ -386,7 +386,6 @@ pub fn proc_args(ctl: &mut EncloneControl, args: &[String]) -> Result<(), String
("BCJOIN", &mut ctl.join_alg_opt.bcjoin),
("BUILT_IN", &mut ctl.gen_opt.built_in),
("CDIFF", &mut ctl.clono_filt_opt.cdiff),
("CHAIN_BRIEF", &mut ctl.clono_print_opt.chain_brief),
("COMPLETE", &mut ctl.gen_opt.complete),
("CON", &mut ctl.allele_print_opt.con),
("CON_CON", &mut ctl.gen_opt.con_con),
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1 change: 0 additions & 1 deletion enclone_core/src/defs.rs
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Expand Up @@ -588,7 +588,6 @@ pub struct ClonoPrintOpt {
pub cvars: Vec<String>, // per-chain per-exact-clonotype columns
pub lvars: Vec<String>, // per-exact-clonotype ('lead') columns
pub regex_match: Vec<HashMap<String, Vec<usize>>>, // matching features for <regex>_g etc.
pub chain_brief: bool, // show abbreviated chain headers
pub sum: bool, // print sum row
pub mean: bool, // print mean row
pub conx: bool,
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