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collapse annotation helper types #406

Merged
merged 10 commits into from
Apr 17, 2024
Merged

collapse annotation helper types #406

merged 10 commits into from
Apr 17, 2024

Commits on Apr 17, 2024

  1. Collapse PerfectMatch and SemiPerfectMatch into Alignment.

    @macklin-10x
    macklin-10x committed Apr 17, 2024
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  2. Move Offset type into sole function that uses it.

    @macklin-10x
    macklin-10x committed Apr 17, 2024
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  3. Provide an explicit implementation of sort by ref_id.

    @macklin-10x
    macklin-10x committed Apr 17, 2024
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  4. Fore PreAnnotation to specify a cmp strategy.

    @macklin-10x
    macklin-10x committed Apr 17, 2024
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  5. Re-express initial alignment type in terms of ref_start and create an… 

    … offset() method.
    @macklin-10x
    macklin-10x committed Apr 17, 2024
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  6. Collapse the two alignment types.

    @macklin-10x
    macklin-10x committed Apr 17, 2024
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  7. Extract the last cmp function and clean up naming.

    @macklin-10x
    macklin-10x committed Apr 17, 2024
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  8. Remove the intermediate transformation but preserve existing variable… 

    … naming.
    @macklin-10x
    macklin-10x committed Apr 17, 2024
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  9. Adjust ref_start calculation to see if it makes a difference.

    @macklin-10x
    macklin-10x committed Apr 17, 2024
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  10. Add missing mutations where we needed to update ref_start.

    @macklin-10x
    macklin-10x committed Apr 17, 2024
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