From 343406c94af81c482017d23f474a0a3efde5b76c Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon, 8 Jul 2024 13:27:44 +0000
Subject: [PATCH] Bump bio from 1.5.0 to 2.0.0 (#248)

---
 Cargo.lock | 51 ++++-----------------------------------------------
 Cargo.toml |  2 +-
 2 files changed, 5 insertions(+), 48 deletions(-)

diff --git a/Cargo.lock b/Cargo.lock
index 40b1dfd..f6847d6 100644
--- a/Cargo.lock
+++ b/Cargo.lock
@@ -88,9 +88,9 @@ dependencies = [
 
 [[package]]
 name = "bio"
-version = "1.5.0"
+version = "2.0.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "25dccfc5babf5a4f505ab5bdda0e18d4b5fc1600c222677c54992203632cbdf5"
+checksum = "77ffe04b598449a4486a45bc15884537a01cb2015d978ce66e51a47b2740ddbe"
 dependencies = [
  "anyhow",
  "approx",
@@ -103,7 +103,6 @@ dependencies = [
  "editdistancek",
  "enum-map",
  "fxhash",
- "getset",
  "itertools",
  "itertools-num",
  "lazy_static",
@@ -521,18 +520,6 @@ dependencies = [
  "wasi",
 ]
 
-[[package]]
-name = "getset"
-version = "0.1.2"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "e45727250e75cc04ff2846a66397da8ef2b3db8e40e0cef4df67950a07621eb9"
-dependencies = [
- "proc-macro-error",
- "proc-macro2",
- "quote",
- "syn 1.0.109",
-]
-
 [[package]]
 name = "gimli"
 version = "0.28.1"
@@ -823,9 +810,9 @@ checksum = "0ab1bc2a289d34bd04a330323ac98a1b4bc82c9d9fcb1e66b63caa84da26b575"
 
 [[package]]
 name = "ordered-float"
-version = "3.9.2"
+version = "4.2.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "f1e1c390732d15f1d48471625cd92d154e66db2c56645e29a9cd26f4699f72dc"
+checksum = "19ff2cf528c6c03d9ed653d6c4ce1dc0582dc4af309790ad92f07c1cd551b0be"
 dependencies = [
  "num-traits",
 ]
@@ -896,30 +883,6 @@ dependencies = [
  "yansi",
 ]
 
-[[package]]
-name = "proc-macro-error"
-version = "1.0.4"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "da25490ff9892aab3fcf7c36f08cfb902dd3e71ca0f9f9517bea02a73a5ce38c"
-dependencies = [
- "proc-macro-error-attr",
- "proc-macro2",
- "quote",
- "syn 1.0.109",
- "version_check",
-]
-
-[[package]]
-name = "proc-macro-error-attr"
-version = "1.0.4"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "a1be40180e52ecc98ad80b184934baf3d0d29f979574e439af5a55274b35f869"
-dependencies = [
- "proc-macro2",
- "quote",
- "version_check",
-]
-
 [[package]]
 name = "proc-macro2"
 version = "1.0.78"
@@ -1276,12 +1239,6 @@ dependencies = [
  "serde",
 ]
 
-[[package]]
-name = "version_check"
-version = "0.9.4"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "49874b5167b65d7193b8aba1567f5c7d93d001cafc34600cee003eda787e483f"
-
 [[package]]
 name = "walkdir"
 version = "2.4.0"
diff --git a/Cargo.toml b/Cargo.toml
index 36703e7..9e95a22 100644
--- a/Cargo.toml
+++ b/Cargo.toml
@@ -28,7 +28,7 @@ rand_xorshift = ">=0.2"
 itertools = ">=0.8"
 lz4 = "*"
 fastq = "^0.6"
-bio = ">=0.33.0, <2"
+bio = ">=0.33.0, <3"
 thiserror = "1"
 
 [dev-dependencies]