diff --git a/environment.yml b/environment.yml new file mode 100644 index 0000000..e69e370 --- /dev/null +++ b/environment.yml @@ -0,0 +1,10 @@ +channels: + - bioconda + - conda-forge + - defaults +dependencies: + - fastqc=0.11.9 + - trimmomatic=0.39 + - bwa=0.7.17=ha92aebf_3 + - samtools=1.9=h8ee4bcc_1 + - bcftools=1.9 \ No newline at end of file diff --git a/requirements.txt b/requirements.txt index 7978335..8125b99 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,14 +1 @@ -jupyterlab==3 -numpy -matplotlib -jupyter-book -jupyterlab-iframe -jupyterlab-git -jupyterlab_myst -jupyter-server-proxy -ghp-import -sphinx-autobuild -sphinxcontrib-mermaid -docutils==0.17.1 # see https://jupyterbook.org/en/stable/content/citations.html?highlight=docutils#citations-and-bibliographies -nox -gh-scoped-creds +igv-notebook \ No newline at end of file