Add config files

apt.txt

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+# Some linux packages for basic terminal work, particularly
+# oriented at users new to Unix/cmd line environments.
+
+# Basic unix tools
+man
+man-db
+manpages-posix
+manpages-dev
+manpages-posix-dev
+
+# Download tools
+curl
+wget
+
+# Core text editors on a *nix box: vim and emacs
+vim
+emacs-nox
+emacs-goodies-el
+
+# A couple of CLI editors that are easier than vim
+# micro  # currently not working on 18.04
+nano
+jed
+jed-extra
+
+# powerful terminal-based file manager, better than the one in JLab
+mc
+
+# for easily managing multiple repositories with one command (perl-doc
+# is needed for its help pages to work)
+mr
+perl-doc
+
+# Regular build tools for compiling common stuff
+build-essential
+gfortran
+
+# Dependencies for nbconvert
+texlive-xetex
+texlive-fonts-recommended
+texlive-plain-generic
+texlive-lang-chinese
+lmodern
+
+# Other useful document-related tools
+pandoc
+latexdiff
+
+# Some useful git utilities use basic Ruby
+ruby
+
+# Other niceties for command-line work and life
+ack   # powerful grep-like tool
+pydf  # colorized disk usage
+tmux
+screen
+htop
+nnn   # cmd line file manager
+zsh
+rsync
+tig  # console UI for git
+multitail
+tree
+
+# For later, these are not available in 18.04
+#browsh # text-based web browser, occasionally handy
+#dasel  # json/yml/csv/etc data wrangling at the terminal
+#fzf   # fuzzy file finder
+
+## This section adds tools for desktop environment usage
+dbus-x11
+xorg
+xubuntu-icon-theme
+xfce4
+xfce4-goodies
+xclip
+xsel
+firefox
+chromium-browser
+
+# GUI text editors
+emacs
+vim-gtk3
+gedit
+
+# Git clients and tools
+git-gui
+gitg
+qgit
+meld

requirements.txt

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+jupyterlab==3
+numpy
+matplotlib
+jupyter-book
+jupyterlab-iframe
+jupyterlab-git 
+jupyterlab_myst
+jupyter-server-proxy
+ghp-import
+sphinx-autobuild
+sphinxcontrib-mermaid
+docutils==0.17.1  # see https://jupyterbook.org/en/stable/content/citations.html?highlight=docutils#citations-and-bibliographies
+nox
+gh-scoped-creds