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1. WES_pipelines WES_pipelines Public

   WES pipelines with luigi

   Python 3 2

2. GPZ-Bioinfo/tmap GPZ-Bioinfo/tmap Public

   topological data analysis of population-scale microbiomes

   Python 32 12

3. pangenome_workflow pangenome_workflow Public

   luigi based workflow for analysising WGS samples collecting from different source. It will auto clustering, annotating gene or species, and finally perform pangenome analysis(roary).

   Python 9

4. amplicon_workflow amplicon_workflow Public

   amplicon analysisng pipelines based on luigi with qiime2-dada2/ qiime2-deblur/vsearch/usearch

   Python 6 3

5. my_toolkit my_toolkit Public

   Some scripts for myself (no documents)

   Python

6. evol_tk evol_tk Public

   some scripts for evolution analysis

   Python 2 2