From ff794f1856e419b95200c55a04c8cd46945201b3 Mon Sep 17 00:00:00 2001
From: David Michaels <david_michaels@hms.harvard.edu>
Date: Fri, 16 Aug 2024 11:21:57 -0400
Subject: [PATCH] Minor changes to utility/troubleshooting/convenience scripts
 view-portal-object and update-portal-object.

---
 dcicutils/scripts/update_portal_object.py |  1 -
 dcicutils/scripts/view_portal_object.py   | 13 ++++++-------
 pyproject.toml                            |  2 +-
 3 files changed, 7 insertions(+), 9 deletions(-)

diff --git a/dcicutils/scripts/update_portal_object.py b/dcicutils/scripts/update_portal_object.py
index 1a73db046..53ea2ecad 100644
--- a/dcicutils/scripts/update_portal_object.py
+++ b/dcicutils/scripts/update_portal_object.py
@@ -251,7 +251,6 @@ def post_or_patch_or_upsert(portal: Portal, file: str, schema_name: Optional[str
             elif isinstance(data, list):
                 if debug:
                     _print(f"DEBUG: File ({file}) contains a list of objects of type: {schema_name}")
-                import pdb ; pdb.set_trace()  # noqa
                 data = _impose_special_ordering(data, schema_name)
                 for index, item in enumerate(data):
                     update_function(portal, item, schema_name, file=file, index=index,
diff --git a/dcicutils/scripts/view_portal_object.py b/dcicutils/scripts/view_portal_object.py
index 4c2ea9b01..cbfbb2aa8 100644
--- a/dcicutils/scripts/view_portal_object.py
+++ b/dcicutils/scripts/view_portal_object.py
@@ -347,19 +347,18 @@ def get_metadata_for_individual_result_type(uuid: str) -> Optional[dict]:  # noq
                 schema_data = response[schema_name]
                 file_name = f"{to_snake_case(schema_name)}.json"
                 file_path = os.path.join(output_directory, file_name)
+                message_verb = "Writing"
                 if os.path.exists(file_path):
+                    message_verb = "Overwriting"
                     if os.path.isdir(file_path):
                         _print(f"WARNING: Output file already exists as a directory. SKIPPING: {file_path}")
                         continue
-                    if force:
-                        if verbose:
-                            _print(f"Overwriting extant file (per --force option): {file_path}")
-                    else:
+                    if not force:
                         _print(f"Output file already exists: {file_path}")
-                    if (not force) and not yes_or_no(f"Overwrite this file?"):
-                        continue
+                        if not yes_or_no(f"Overwrite this file?"):
+                            continue
                 if verbose:
-                    _print(f"Writing {schema_name} (object{'s' if len(schema_data) != 1 else ''}:"
+                    _print(f"{message_verb} {schema_name} (object{'s' if len(schema_data) != 1 else ''}:"
                            f" {len(schema_data)}) file: {file_path}")
                 with io.open(file_path, "w") as f:
                     json.dump(schema_data, f, indent=4)
diff --git a/pyproject.toml b/pyproject.toml
index 2c50a4678..e6763c7b9 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "dcicutils"
-version = "8.14.0.1b5"  # TODO: To become 8.14.1
+version = "8.14.0.1b6"  # TODO: To become 8.14.1
 description = "Utility package for interacting with the 4DN Data Portal and other 4DN resources"
 authors = ["4DN-DCIC Team <support@4dnucleome.org>"]
 license = "MIT"