Update README.md #63
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| name: R-CMD-check-test | |
| on: | |
| push: | |
| branches: [main] | |
| pull_request: | |
| branches: [main] | |
| jobs: | |
| R-CMD-check-ubuntu: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3.6.0 | |
| - name: Set up R | |
| uses: r-lib/actions/setup-r@v2 | |
| - name: Install system dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y libudunits2-dev libgdal-dev libgeos-dev libproj-dev | |
| sudo apt-get install -y texlive texlive-latex-extra texlive-fonts-recommended texlive-fonts-extra texinfo ghostscript | |
| - name: Determine Cache Key | |
| id: cache-key | |
| run: | | |
| echo "CACHE_KEY=renv-$(date +%Y-%m)" >> $GITHUB_ENV | |
| - name: Print Cache Key | |
| run: | | |
| echo "Cache key is: ${{ env.CACHE_KEY }}" | |
| - name: Cache R packages | |
| uses: actions/cache@v4 | |
| with: | |
| path: ~/.cache/R | |
| key: ${{ env.CACHE_KEY }} | |
| restore-keys: | | |
| ${{ runner.os }}-renv- | |
| - name: Install R packages | |
| run: | | |
| Rscript -e ' | |
| packages <- c("devtools", "remotes", "terra", "sf", "rgbif", "CoordinateCleaner", "ClusterR", "FNN", "geometry", "cluster", "rnaturalearth", "mclust", "methods", "utils", "zip") | |
| installed <- rownames(installed.packages()) | |
| missing <- setdiff(packages, installed) | |
| if (length(missing) > 0) { | |
| install.packages(missing, repos = "https://cloud.r-project.org") | |
| } | |
| ' | |
| - name: Check package | |
| run: | | |
| R CMD build . | |
| R CMD check *.tar.gz | |
| - name: Upload check results | |
| if: always() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: R-CMD-check-results | |
| path: gbif.range.Rcheck |