2024-04-15 13:24:47: Run 1

README.md

@@ -1,16 +1,16 @@
 # 025deg_jra55_iaf
-Standard configuration for 0.25 degree [ACCESS-OM2](https://github.com/ACCESS-NRI/access-om2) experiment (ACCESS-OM2-025) with JRA55-do interannual forcing (IAF) from 1958 to present time.
+Standard configuration for 0.25 degree [ACCESS-OM2](https://github.com/ACCESS-NRI/access-om2) experiment (ACCESS-OM2-025) with JRA55-do interannual forcing (IAF).
 
 This is the physics-only version.
 
-For usage instructions, see the [ACCESS-Hive Docs](https://access-hive.org.au/models/run-a-model/run-access-om/)
+For usage instructions, see the [ACCESS-Hive docs](https://access-hive.org.au/models/run-a-model/run-access-om/)
 
 Run length and timestep are set in `accessom2.nml`. The default timestep for this configuration is 1350 seconds, and the model is stable with this timestep right from the start. After the first year or two of model equilibration you may be able to run with a 1800s timestep for faster throughput.
 
 ## Conditions of use
 
-COSIMA requests that users of this or other ACCESS-OM2 model code:
+COSIMA request that users of this or other ACCESS-OM2 model code:
 1. consider citing Kiss et al. (2020) ([http://doi.org/10.5194/gmd-13-401-2020](http://doi.org/10.5194/gmd-13-401-2020))
 2. include an acknowledgement such as the following:
 *The authors thank the Consortium for Ocean-Sea Ice Modelling in Australia (COSIMA; [http://www.cosima.org.au](http://www.cosima.org.au)) for making the ACCESS-OM2 suite of models available at [https://github.com/COSIMA/access-om2](https://github.com/COSIMA/access-om2).*
-3. let us know of any publications which use these models or data so we can add them to [their list](https://scholar.google.com/citations?hl=en&user=inVqu_4AAAAJ).
+3. let COSIMA know of any publications which use these models or data so we can add them to [their list](https://scholar.google.com/citations?hl=en&user=inVqu_4AAAAJ).

accessom2.nml

@@ -17,5 +17,5 @@
 
     ! Runtime for a single segment/job/submit, format is years, months, seconds,
     ! two of which must be zero.
-    restart_period = 2, 0, 0
+    restart_period = 0, 1, 0
 &end

config.yaml

@@ -27,7 +27,7 @@ input:
 submodels:
     - name: atmosphere
       model: yatm
-      exe: /g/data/vk83/apps/spack/0.20/release/linux-rocky8-x86_64/intel-19.0.5.281/libaccessom2-git.2023.10.26=2023.10.26-ieiy3e7hidn4dzaqly3ly2yu45mecgq4/bin/yatm.exe
+      exe: /g/data/vk83/apps/spack/0.20/release/linux-rocky8-x86_64/intel-19.0.5.281/libaccessom2-git.2023.10.26=2023.10.26-ltfg7jcn6t4cefotvj3kjnyu5nru26xo/bin/yatm.exe
       input:
             - /g/data/vk83/experiments/inputs/access-om2/remapping_weights/JRA55/global.025deg/2020.05.30/rmp_jrar_to_cict_CONSERV.nc
             - /g/data/qv56/replicas/input4MIPs/CMIP6/OMIP/MRI/MRI-JRA55-do-1-4-0/atmos/3hr/rsds/gr/v20190429

manifests/exe.yaml

@@ -2,10 +2,10 @@ format: yamanifest
 version: 1.0
 ---
 work/atmosphere/yatm.exe:
-  fullpath: /g/data/vk83/apps/spack/0.20/release/linux-rocky8-x86_64/intel-19.0.5.281/libaccessom2-git.2023.10.26=2023.10.26-ieiy3e7hidn4dzaqly3ly2yu45mecgq4/bin/yatm.exe
+  fullpath: /g/data/vk83/apps/spack/0.20/release/linux-rocky8-x86_64/intel-19.0.5.281/libaccessom2-git.2023.10.26=2023.10.26-ltfg7jcn6t4cefotvj3kjnyu5nru26xo/bin/yatm.exe
   hashes:
-    binhash: 61890159678b68a1699cb989d2c2864e
-    md5: 7bbd1014eb48b16406877d1b93ae1a47
+    binhash: 4e8b4ef76e971c4af3b26cfac632e160
+    md5: 5baa1d417fe6708fc30cbeaa57d82f96
 work/ice/cice_auscom_1440x1080_48x40_480p.exe:
   fullpath: /g/data/vk83/apps/spack/0.20/release/linux-rocky8-x86_64/intel-19.0.5.281/cice5-git.2023.10.19=2023.10.19-rh3xfkrgajya3ghtliacuhlx3pgvrzqs/bin/cice_auscom_1440x1080_48x40_480p.exe
   hashes:

manifests/input.yaml

@@ -2187,7 +2187,7 @@ work/atmosphere/INPUT/rlds_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-4-0_g
     binhash: f1a3c4313a4f6ff631f0fe887a849153
     md5: 3d08213bdacd00ba2cfde806cf6d6b6f
 work/atmosphere/INPUT/rmp_jrar_to_cict_CONSERV.nc:
-  fullpath: /g/data/ik11/inputs/access-om2/input_20230515_025deg_topog/yatm_025deg/rmp_jrar_to_cict_CONSERV.nc
+  fullpath: /g/data/vk83/experiments/inputs/access-om2/remapping_weights/JRA55/global.025deg/2020.05.30/rmp_jrar_to_cict_CONSERV.nc
   hashes:
     binhash: 5c9dc38068da3431afd3aa342bebbbcc
     md5: 2e8cf1844fe7a1156ef47170a6eb5ef1
@@ -3431,42 +3431,6 @@ work/atmosphere/INPUT/vas_input4MIPs_atmosphericState_OMIP_MRI-JRA55-do-1-4-0_gr
   hashes:
     binhash: 987ff85784eff1316d6929f631fe1426
     md5: b0e514bfac0d9dfbf538d36b8ecd17f9
-work/ice/RESTART/grid.nc:
-  copy: true
-  fullpath: /g/data/tm70/as2285/esmgrids/025deg/grid.nc
-  hashes:
-    binhash: 72fc887d7553ba638b48afe6416bb078
-    md5: d72c0fa43e3aea96c9157514b3876bff
-work/ice/RESTART/i2o.nc:
-  copy: true
-  fullpath: /g/data/vk83/experiments/inputs/access-om2/ice/initial_conditions/global.025deg/2020.05.30/i2o.nc
-  hashes:
-    binhash: 169a43590d8b0c812af3d993c4f65e8c
-    md5: ca16c9eef58814b9ff13fd5e8bd88a25
-work/ice/RESTART/kmt.nc:
-  copy: true
-  fullpath: /g/data/tm70/as2285/esmgrids/025deg/kmt.nc
-  hashes:
-    binhash: 048003c4269efb1da0151e962564f45c
-    md5: bd2a45147ae0ed9806708f6fdfc89ddc
-work/ice/RESTART/monthly_sstsss.nc:
-  copy: true
-  fullpath: /g/data/vk83/experiments/inputs/access-om2/ice/initial_conditions/global.025deg/2020.05.30/monthly_sstsss.nc
-  hashes:
-    binhash: 2fdf1798189b37092a239c9c947d9d26
-    md5: 598c7aa8a08fe3f48a621f781dd26331
-work/ice/RESTART/o2i.nc:
-  copy: true
-  fullpath: /g/data/vk83/experiments/inputs/access-om2/ice/initial_conditions/global.025deg/2020.10.22/o2i.nc
-  hashes:
-    binhash: 29b684d1cc141deb8f4bc69a47c12801
-    md5: 5c695c6a91b4a2f64e653a5baa62c34a
-work/ice/RESTART/u_star.nc:
-  copy: true
-  fullpath: /g/data/vk83/experiments/inputs/access-om2/ice/initial_conditions/global.025deg/2020.05.30/u_star.nc
-  hashes:
-    binhash: d0496680b0c663575627c6b13cdde39a
-    md5: 4be7800aa8e310a6c7a9c3af1d50c7f0
 work/ocean/INPUT/chl.nc:
   fullpath: /g/data/vk83/experiments/inputs/access-om2/ocean/chlorophyll/global.025deg/2020.05.30/chl.nc
   hashes: