Merge remote-tracking branch 'origin/maxgamill-sheffield/800-better-t…

…racing' into maxgamill-sheffield/800-better-tracing
AFM-SPM · Oct 8, 2024 · c45ace6 · c45ace6
2 parents f7e62ad + 5ac50ed
commit c45ace6
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diff --git a/tests/conftest.py b/tests/conftest.py
@@ -21,6 +21,7 @@
 from topostats.grainstats import GrainStats
 from topostats.io import LoadScans, read_yaml
 from topostats.plotting import TopoSum
+from topostats.tracing.dnatracing import dnaTrace
 from topostats.utils import _get_mask, get_mask, get_thresholds
 
 # This is required because of the inheritance used throughout

diff --git a/topostats/tracing/disordered_tracing.py b/topostats/tracing/disordered_tracing.py
@@ -364,6 +364,7 @@ def trace_image_disordered(  # pylint: disable=too-many-arguments,too-many-local
             disordered_trace_crop_data[f"grain_{cropped_image_index}"] = disordered_trace_images
             disordered_trace_crop_data[f"grain_{cropped_image_index}"]["bbox"] = bboxs[cropped_image_index]
 
+        # when skel too small, pruned to 0's, skan -> ValueError -> skipped
         except Exception as e:  # pylint: disable=broad-exception-caught
             LOGGER.error(
                 f"[{filename}] : Disordered tracing of grain"