Update notebooks for better tracing

[SylviaWhittle]

Is your feature request related to a problem?

#932 Completely breaks the notebooks. They need updating ASAP. I've marked them as outdated so users at least know not to use them yet.

Describe the solution you would like.

Update the notebooks to work on the new topostats structure.

Describe the alternatives you have considered.

No response

Additional context

No response

[ns-rse]

Questions, questions, questions (sorry!)

• Do we know how widely these notebooks are used both internally and externally?
• Internally do people use them as a basis for undertaking work?
• Are all notebooks broken?
• Is it the YAML configuration that needs updating? If so we should reconsider whether we want to include example configurations for people to copy and paste as that adds an overhead to development to keep the example up-to-date with whatever is in the main branch. We could instead explain how to use topostats create-config.