iCVMapp3r (pronounced icvmapper) is a CNN-based algorithm for brain extraction (skull-stripping) using MRI images from BrainLab. It can deal with brains with lesions and extensive atrophy and extracts the brain in seconds. It can use a T1-weighted image or a combination of T1, T2 and Flair scans as input.
We recommend using iCVMapp3r with the Docker or Singularity containers we provide, since support for local installs has been discontinued. See our doc: installation instructions for more information.
For more details, see our docs.
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