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Tests: Skip llh test for Isensee_JCB2018 (#2621)
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* Tests: Skip llh test for Isensee_JCB2018

Until it has been decided which model/dataset is the correct one, and the expected llh is updated accordingly.

See Benchmarking-Initiative/Benchmark-Models-PEtab#253

* fix broken pytest invocation
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dweindl authored Dec 9, 2024
1 parent f9e64de commit 5e938b1
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2 changes: 1 addition & 1 deletion .github/workflows/test_benchmark_collection_models.yml
Original file line number Diff line number Diff line change
Expand Up @@ -67,7 +67,7 @@ jobs:
AMICI_PARALLEL_COMPILE: ""
run: |
cd tests/benchmark-models && pytest \
--durations=10
--durations=10 \
--cov=amici \
--cov-report=xml:"coverage_py.xml" \
--cov-append \
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4 changes: 3 additions & 1 deletion tests/benchmark-models/test_petab_benchmark.py
Original file line number Diff line number Diff line change
Expand Up @@ -123,7 +123,9 @@
"Elowitz_Nature2000",
"Fiedler_BMCSystBiol2016",
"Fujita_SciSignal2010",
"Isensee_JCB2018",
# Excluded until https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/pull/253
# is sorted out
# "Isensee_JCB2018",
"Lucarelli_CellSystems2018",
"Schwen_PONE2014",
"Smith_BMCSystBiol2013",
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