Define Tdust as an auxiliary variable in primordial chemistry #1710
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: burn_cell_primordial_chem | |
| on: [pull_request] | |
| jobs: | |
| burn_cell_primordial_chem: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Get AMReX | |
| run: | | |
| mkdir external | |
| cd external | |
| git clone https://github.com/AMReX-Codes/amrex.git | |
| cd amrex | |
| git checkout development | |
| echo 'AMREX_HOME=$(GITHUB_WORKSPACE)/external/amrex' >> $GITHUB_ENV | |
| echo $AMREX_HOME | |
| if [[ -n "${AMREX_HOME}" ]]; then exit 1; fi | |
| cd ../.. | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get update -y -qq | |
| sudo apt-get -qq -y install curl cmake jq clang g++>=9.3.0 | |
| - name: Compile and run | |
| run: | | |
| cd unit_test/burn_cell_primordial_chem | |
| make -j 2 | |
| ./main1d.gnu.DEBUG.ex inputs_primordial_chem amrex.fpe_trap_{invalid,zero,overflow}=1 > test.out | |
| - name: Print backtrace | |
| if: ${{ failure() && hashFiles('unit_test/burn_cell_primordial_chem/Backtrace.0') != '' }} | |
| run: cat unit_test/burn_cell_primordial_chem/Backtrace.0 | |
| - name: Compare to stored output | |
| run: | | |
| set -e | |
| cd unit_test/burn_cell_primordial_chem | |
| line_numbers=(456 458 460 463 465 471 476) | |
| threshold=0.01 | |
| error_found=false | |
| for line_number in "${line_numbers[@]}"; do | |
| value1=$(awk 'NR=='"$line_number"' {match($0, /[+-]?[0-9]+([.][0-9]+)?[eE]?[+-]?[0-9]+/); if (RSTART) print substr($0, RSTART, RLENGTH); else print 0}' test.out) | |
| value2=$(awk 'NR=='"$line_number"' {match($0, /[+-]?[0-9]+([.][0-9]+)?[eE]?[+-]?[0-9]+/); if (RSTART) print substr($0, RSTART, RLENGTH)}' reference_solution.out) | |
| difference=$(awk -v val1="$value1" -v val2="$value2" 'BEGIN { printf "%.2f", (val1 - val2) / val2 }') | |
| if (( $(echo "$difference > $threshold" | bc -l) )); then | |
| echo "Line number: $line_number" | |
| echo "Value in test.out: $value1" | |
| echo "Value in reference_solution.out: $value2" | |
| echo "Difference between test and reference value is more than allowed threshold of $threshold" | |
| echo | |
| error_found=true | |
| fi | |
| done | |
| if [[ $error_found == true ]]; then | |
| exit 1 | |
| fi | |