diff --git a/networks/ignition_simple/actual_network.H b/networks/ignition_simple/actual_network.H index 01d36ef38a..56ce3c5eec 100644 --- a/networks/ignition_simple/actual_network.H +++ b/networks/ignition_simple/actual_network.H @@ -151,8 +151,8 @@ namespace RHS template AMREX_GPU_HOST_DEVICE AMREX_INLINE - void postprocess_rate (const rhs_state_t& state, rate_t& rates, - rate_t& rates1, [[maybe_unused]] rate_t& rates2, [[maybe_unused]] rate_t& rates3) + void postprocess_rate ([[maybe_unused]] const rhs_state_t& state, [[maybe_unused]] rate_t& rates, + [[maybe_unused]] rate_t& rates1, [[maybe_unused]] rate_t& rates2, [[maybe_unused]] rate_t& rates3) { using namespace Species; using namespace Rates; diff --git a/sphinx_docs/source/conf.py b/sphinx_docs/source/conf.py index ef0c457b08..cc44e08fb8 100644 --- a/sphinx_docs/source/conf.py +++ b/sphinx_docs/source/conf.py @@ -219,6 +219,12 @@ def get_version(): ] +# -- Options for linkcheck + +linkcheck_retries = 3 +linkcheck_timeout = 100 +user_agent = "Mozilla/5.0 (X11; Linux x86_64; rv:25.0) Gecko/20100101 Firefox/25.0" + # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples diff --git a/sphinx_docs/source/refs.bib b/sphinx_docs/source/refs.bib index d10c1b5398..cc5268647c 100644 --- a/sphinx_docs/source/refs.bib +++ b/sphinx_docs/source/refs.bib @@ -507,7 +507,6 @@ @article{mott_qss year = {2000}, issn = {0021-9991}, doi = {https://doi.org/10.1006/jcph.2000.6605}, - url = {https://www.sciencedirect.com/science/article/pii/S0021999100966051}, author = {David R. Mott and Elaine S. Oran and Bram {van Leer}}, abstract = {A quasi-steady-state method is presented that integrates stiff differential equations arising from reaction kinetics. This predictor–corrector method is A-stable for linear equations and second-order accurate. The method is used for all species regardless of the time scales of the individual equations, and it works well for problems typical of hydrocarbon combustion. Start-up costs are low, making the method ideal for use in process-split reacting-flow simulations which require the solution of an initial-value problem in every computational cell for every global time step. The algorithm is described, and error analysis and linear stability analysis are included. The algorithm is also applied to several test problems, and the results are compared to those of the stiff integrator CHEMEQ. The method, which we call α-QSS, is more stable, more accurate, and less costly than CHEMEQ.} } diff --git a/unit_test/burn_cell_primordial_chem/GNUmakefile b/unit_test/burn_cell_primordial_chem/GNUmakefile index 8e288cca49..ba0024acf6 100644 --- a/unit_test/burn_cell_primordial_chem/GNUmakefile +++ b/unit_test/burn_cell_primordial_chem/GNUmakefile @@ -19,12 +19,6 @@ USE_MICROPHYSICS_DEBUG = TRUE EBASE = main -USE_CXX_REACTIONS ?= TRUE - -ifeq ($(USE_CXX_REACTIONS),TRUE) - DEFINES += -DCXX_REACTIONS -endif - # define the location of the Microphysics top directory MICROPHYSICS_HOME := ../.. diff --git a/unit_test/test_aprox_rates/main.cpp b/unit_test/test_aprox_rates/main.cpp index 98f753a80b..59f28c7de7 100644 --- a/unit_test/test_aprox_rates/main.cpp +++ b/unit_test/test_aprox_rates/main.cpp @@ -158,12 +158,11 @@ void main_main () ParallelDescriptor::ReduceRealMax(stop_time, IOProc); std::string name = "test_aprox_rates."; - std::string language = ".cxx"; // Write a plotfile - WriteSingleLevelPlotfile(name + eos_name + language, state, names, geom, time, 0); + WriteSingleLevelPlotfile(name + eos_name, state, names, geom, time, 0); - write_job_info(name + eos_name + language); + write_job_info(name + eos_name); // Tell the I/O Processor to write out the "run time" amrex::Print() << "Run time = " << stop_time << std::endl; diff --git a/unit_test/test_ase/GNUmakefile b/unit_test/test_ase/GNUmakefile index 6946850e40..3ba0e1f7e6 100644 --- a/unit_test/test_ase/GNUmakefile +++ b/unit_test/test_ase/GNUmakefile @@ -16,12 +16,6 @@ USE_NSE_NET = TRUE EBASE = main -USE_CXX_REACTIONS ?= TRUE - -ifeq ($(USE_CXX_REACTIONS),TRUE) - DEFINES += -DCXX_REACTIONS -endif - # define the location of the Microphysics top directory MICROPHYSICS_HOME := ../.. diff --git a/unit_test/test_conductivity/main.cpp b/unit_test/test_conductivity/main.cpp index d8de2b86f0..820fdcfa16 100644 --- a/unit_test/test_conductivity/main.cpp +++ b/unit_test/test_conductivity/main.cpp @@ -157,12 +157,11 @@ void main_main () ParallelDescriptor::ReduceRealMax(stop_time, IOProc); std::string name = "test_conductivity."; - std::string language = ".cxx"; // Write a plotfile - WriteSingleLevelPlotfile(name + cond_name + language, state, names, geom, time, 0); + WriteSingleLevelPlotfile(name + cond_name, state, names, geom, time, 0); - write_job_info(name + cond_name + language); + write_job_info(name + cond_name); // Tell the I/O Processor to write out the "run time" amrex::Print() << "Run time = " << stop_time << std::endl; diff --git a/unit_test/test_eos/main.cpp b/unit_test/test_eos/main.cpp index 6fc42c3a64..e0c4d19886 100644 --- a/unit_test/test_eos/main.cpp +++ b/unit_test/test_eos/main.cpp @@ -149,12 +149,11 @@ void main_main () std::string name = "test_eos."; - std::string language = ".cxx"; // Write a plotfile - WriteSingleLevelPlotfile(name + eos_name + language, state, names, geom, time, 0); + WriteSingleLevelPlotfile(name + eos_name, state, names, geom, time, 0); - write_job_info(name + eos_name + language); + write_job_info(name + eos_name); // Tell the I/O Processor to write out the "run time" amrex::Print() << "Run time = " << stop_time << std::endl; diff --git a/unit_test/test_react/main.cpp b/unit_test/test_react/main.cpp index c8788312c3..ef051bf564 100644 --- a/unit_test/test_react/main.cpp +++ b/unit_test/test_react/main.cpp @@ -249,12 +249,10 @@ void main_main () std::string name = "test_react."; std::string integrator = buildInfoGetModuleVal(int_idx); - std::string language = ".cxx"; - // Write a plotfile - WriteSingleLevelPlotfile(prefix + name + integrator + language, state, names, geom, time, 0); + WriteSingleLevelPlotfile(prefix + name + integrator, state, names, geom, time, 0); - write_job_info(prefix + name + integrator + language); + write_job_info(prefix + name + integrator); // output stats on the number of RHS calls diff --git a/unit_test/test_sdc/main.cpp b/unit_test/test_sdc/main.cpp index cdc438f32d..7967b7ecb6 100644 --- a/unit_test/test_sdc/main.cpp +++ b/unit_test/test_sdc/main.cpp @@ -241,12 +241,10 @@ void main_main () std::string name = "test_react."; std::string integrator = buildInfoGetModuleVal(int_idx); - std::string language = ".cxx"; - // Write a plotfile - WriteSingleLevelPlotfile(prefix + name + integrator + language, state, names, geom, time, 0); + WriteSingleLevelPlotfile(prefix + name + integrator, state, names, geom, time, 0); - write_job_info(prefix + name + integrator + language); + write_job_info(prefix + name + integrator); // Tell the I/O Processor to write out the "run time" amrex::Print() << "Run time = " << stop_time << std::endl;