Akp mt updates #153
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| name: tests | |
| on: [push, pull_request] | |
| jobs: | |
| pytest-unit: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.9"] | |
| steps: | |
| - name: System Dependencies | |
| run: | | |
| sudo apt install -y build-essential \ | |
| libcairo2-dev \ | |
| pkg-config \ | |
| python3-dev \ | |
| python3-openssl | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Cache Python dependencies | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.cache/pip | |
| key: ${{ runner.os }}-pip-${{ hashFiles('pip/*.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip- | |
| - name: Install dependencies | |
| run: | | |
| python3.9 -m pip install --upgrade pip | |
| pip install -e . | |
| if [ -f pip/cpu_requirements.txt ]; then pip install -r pip/cpu_requirements.txt; fi | |
| if [ -f pip/dev_requirements.txt ]; then pip install -r pip/dev_requirements.txt; fi | |
| - name: pytest | |
| run: | | |
| # python3.9 -m pytest --capture=sys --capture=fd --cov=atomsci/ -vv atomsci/ddm/test/unit | |
| cd atomsci/ddm/test/unit && python3.9 -m pytest -n 2 --capture=sys --capture=fd --cov=atomsci -vv | |
| env: | |
| ENV: test | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/codecov-action@v4 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| pytest-integrative-1: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.9"] | |
| steps: | |
| - name: System Dependencies | |
| run: | | |
| sudo apt install -y build-essential \ | |
| libcairo2-dev \ | |
| pkg-config \ | |
| python3-dev \ | |
| python3-openssl | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Cache Python dependencies | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.cache/pip | |
| key: ${{ runner.os }}-pip-${{ hashFiles('pip/*.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip- | |
| - name: Install dependencies | |
| run: | | |
| python3.9 -m pip install --upgrade pip | |
| pip install -e . | |
| if [ -f pip/cpu_requirements.txt ]; then pip install -r pip/cpu_requirements.txt; fi | |
| if [ -f pip/dev_requirements.txt ]; then pip install -r pip/dev_requirements.txt; fi | |
| - name: pytest | |
| run: | | |
| # TODO: Run this test with pytest for paralell testing | |
| # python3.9 -m pytest -n 2 --capture=sys --capture=fd --cov=atomsci -vv atomsci/ddm/test/integrative | |
| cd atomsci/ddm/test/integrative && ./integrative_batch_chunk_tests 0 | |
| env: | |
| ENV: test | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/codecov-action@v4 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| pytest-integrative-2: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.9"] | |
| steps: | |
| - name: System Dependencies | |
| run: | | |
| sudo apt install -y build-essential \ | |
| libcairo2-dev \ | |
| pkg-config \ | |
| python3-dev \ | |
| python3-openssl | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Cache Python dependencies | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.cache/pip | |
| key: ${{ runner.os }}-pip-${{ hashFiles('pip/*.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip- | |
| - name: Install dependencies | |
| run: | | |
| python3.9 -m pip install --upgrade pip | |
| pip install -e . | |
| if [ -f pip/cpu_requirements.txt ]; then pip install -r pip/cpu_requirements.txt; fi | |
| if [ -f pip/dev_requirements.txt ]; then pip install -r pip/dev_requirements.txt; fi | |
| - name: pytest | |
| run: | | |
| # TODO: Run this test with pytest for paralell testing | |
| # python3.9 -m pytest -n 2 --capture=sys --capture=fd --cov=atomsci -vv atomsci/ddm/test/integrative | |
| cd atomsci/ddm/test/integrative && ./integrative_batch_chunk_tests 1 | |
| env: | |
| ENV: test | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/codecov-action@v4 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| pytest-integrative-3: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.9"] | |
| steps: | |
| - name: System Dependencies | |
| run: | | |
| sudo apt install -y build-essential \ | |
| libcairo2-dev \ | |
| pkg-config \ | |
| python3-dev \ | |
| python3-openssl | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Cache Python dependencies | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.cache/pip | |
| key: ${{ runner.os }}-pip-${{ hashFiles('pip/*.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip- | |
| - name: Install dependencies | |
| run: | | |
| python3.9 -m pip install --upgrade pip | |
| pip install -e . | |
| if [ -f pip/cpu_requirements.txt ]; then pip install -r pip/cpu_requirements.txt; fi | |
| if [ -f pip/dev_requirements.txt ]; then pip install -r pip/dev_requirements.txt; fi | |
| - name: pytest | |
| run: | | |
| # TODO: Run this test with pytest for paralell testing | |
| # python3.9 -m pytest -n 2 --capture=sys --capture=fd --cov=atomsci -vv atomsci/ddm/test/integrative | |
| cd atomsci/ddm/test/integrative && ./integrative_batch_chunk_tests 2 | |
| env: | |
| ENV: test | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/codecov-action@v4 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| pytest-integrative-4: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.9"] | |
| steps: | |
| - name: System Dependencies | |
| run: | | |
| sudo apt install -y build-essential \ | |
| libcairo2-dev \ | |
| pkg-config \ | |
| python3-dev \ | |
| python3-openssl | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Cache Python dependencies | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.cache/pip | |
| key: ${{ runner.os }}-pip-${{ hashFiles('pip/*.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip- | |
| - name: Install dependencies | |
| run: | | |
| python3.9 -m pip install --upgrade pip | |
| pip install -e . | |
| if [ -f pip/cpu_requirements.txt ]; then pip install -r pip/cpu_requirements.txt; fi | |
| if [ -f pip/dev_requirements.txt ]; then pip install -r pip/dev_requirements.txt; fi | |
| - name: pytest | |
| run: | | |
| # TODO: Run this test with pytest for paralell testing | |
| # python3.9 -m pytest -n 2 --capture=sys --capture=fd --cov=atomsci -vv atomsci/ddm/test/integrative | |
| cd atomsci/ddm/test/integrative && ./integrative_batch_chunk_tests 3 | |
| env: | |
| ENV: test | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/codecov-action@v4 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} |