v0.17.1

Fix

• Allowed types works again (dbe75ca)
• All arg names now congruent, visit_types takes a list of visit types instead of string (e63e9d4)

v0.17.0

Feature

• Add text loaders (9c7d959)

v0.16.1

Fix

• Use acute outpatient visits as well (659af23)
• Typo, and use newest data (bbbc8f5)
• Use end dates for all contacts (d8940c1)
• Use end times for all diagnosis loading (4d9e600)

v0.16.0

Feature

• Remove try/except to avoid debugger getting stuck on it (3884ab8)

Fix

• Move all str operations into the if statement (91f9174)

v0.15.0

Feature

• Move logs next to their dataset (e0ed033)

Documentation

• Improve quarantine docs (1b23f19)

v0.14.0

Feature

• Name wandb project_name-feature-generation (b601d80)

v0.13.0

Feature

• Improve logging in flatten_dataset (63f252f)
• Enable minimum specificaitons (669e3ed)
• Enable minimum specificaitons (523cfd1)
• Log rows dropped by PredictionTimeFilterer (7e02d8e)
• Add moves loader (0521dd0)
• First stab at loader (f9048b8)

Fix

• Add pred_time_uuid if not specified when filtering (acca5b9)

Performance

• Avoid groupby in filter_prediction_times (a66e361)

v0.12.0

Feature

• Add rows dropped logging (33ba525)
• Allow filtering based on quarantine dates (3deb052)
• Improve logging - debug to file, info to stdout (aff10a9)
• Move wandb init earlier so wandb_alerts can cover values_df loading (6c153b1)
• Generate full feature set (9ba907a)
• Wrap as much of main as possible in wandb exception (3b085af)
• Allow timestamps only return from visit loaders for use as pred_times (f9534e0)
• Migrate some loaders to logging. (f81fd92)
• More explicit logging (7969210)
• Init changes (f257daa)

Fix

• Use lookbehind instead of interval days (7e14ad5)
• Only one feature cache per project (cb0b8b0)
• Unused input args (fa14461)
• Wandb util was missing text kwarg (64c1729)

Performance

• Infer CPU cores from logical cores (309e9d2)

v0.11.0

Feature

• Add wandb alert on exception (3ff6e37)

Documentation

• Improve create_flattened_dataset docs (637edfe)
• Misc. docs (4eac2ba)
• Fix github test badge (dffeedc)

v0.10.0

Feature

• Add n_hba1c_within_n_lookahead_days (e84b591)
• Add outcome (cd39dd6)
• Add birth year as a predictor (7b186d2)
• Allow exclusion of specific atc codes (75619a1)

Fix

• Date of birth col name should respect output prefix (6ec6535)
• Incorrect column name when adding age as predictor (cdbf25c)
• Errors in sql loaders after refactor (28c9f63)
• Correct type hinting in load_diagnoses (f2d5c5b)

Documentation

• Speccify that n_rows = None returns all rows. (a4720a8)

Performance

• Shuffle feature specs to even out compute vs. IO load (0db9f0f)
• Tweak n_workers for more performance (3eeee4d)
• Segment feature loading for more parallelisation (9ee5c87)
• Rotate feature addition for debugging (76af9c7)
• Parallelise temporal predictor loading (8d53f16)
• Only create one subprocess per values loader (1a3e5de)
• Parralelise groupspec combination creation (9ccba2a)