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Config Settings and Documentation #758

Merged
merged 459 commits into from
Feb 1, 2024
Merged

Config Settings and Documentation #758

merged 459 commits into from
Feb 1, 2024
This pull request is big! We’re only showing the most recent 250 commits.

Commits on May 5, 2023

  1. yaml.dump paths to strings

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  2. logit configs in separate file [makedocs]

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Commits on May 8, 2023

  1. configs for trip dest

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  2. cleanup

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  3. deprecate DESTINATION_SAMPLE_SPEC and DESTINATION_SPEC

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Commits on May 9, 2023

  1. cfg for mandatory locations

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  2. shadow pricing cfg

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  3. COEFFS file is optional

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  4. common tour location component settings

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Commits on May 10, 2023

  1. pop include_settings

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  2. fix SHADOW_PRICE_METHOD

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  3. fix bugs

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  4. repair

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  5. TourODSettings

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  6. robust write_spec

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Commits on May 12, 2023

  1. accessibility config

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Commits on May 15, 2023

  1. tour mode

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  2. prefer float to str

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Commits on May 16, 2023

  1. clean up

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Commits on May 17, 2023

  1. overflow protection in utils_to_probs

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  2. only enable overflow_protect when not allow_zero_probs

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  3. logsums w probs

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Commits on May 18, 2023

  1. tweaks in regression test due to overflow protection

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Commits on May 19, 2023

  1. Merge branch 'develop' into overflow-protection

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  2. Merge branch 'overflow-protection' into cfg-TourMode

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Commits on May 25, 2023

  1. test logging

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  2. annotate rng

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  3. Merge branch 'upstream-develop' into generic-whale

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  4. update semcog model

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  5. docs for logging

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  6. fix semcog example test

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  7. only one add_size_tables func

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  8. better error msg

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  9. remove extra lines

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  10. multiple output dirs for tests

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Commits on Jun 1, 2023

  1. push recoding

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  2. recoding both ways

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Commits on Jun 2, 2023

  1. recoding on mp

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  2. Merge branch 'fix-684' into cfg-TourMode 

    # Conflicts:
#	activitysim/examples/production_semcog/configs/logging.yaml
#	activitysim/examples/prototype_semcog/test/test_semcog.py
#	docs/examples.rst
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  3. avoid error sorting on no index

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  4. validate settings

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Commits on Jun 19, 2023

  1. public BaseLogitComponentSettings

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  2. fix for chunking

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  3. blacken

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  4. remove vestigial log_df

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  5. undo junk

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  6. docstring

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Commits on Jun 20, 2023

  1. write log to output dir

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  2. more docs on logging

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  3. bigger chunksize, too small times out

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  4. clean up when missing TAZ input table

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  5. historian

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  6. allow state to be None

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Commits on Jun 21, 2023

  1. change recode_pipeline_columns default to false

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  2. update prototype_psrc_in_development

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  3. fix cdap for sharrow

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  4. import skim_dataset

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  5. recode pipeline for mtc

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Commits on Jun 22, 2023

  1. Multiprocessing Performance

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Commits on Jun 23, 2023

  1. Arithmetic on Logical Values

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  2. clarify

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Commits on Jun 26, 2023

  1. Merge branch 'generic-whale' into cfg-TourMode

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  2. annotations

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  3. config for joint tour freq

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Commits on Jun 30, 2023

  1. TimeSettings

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  2. allow deprecated hours

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Commits on Aug 7, 2023

  1. Merge branch 'orca-cleanup' into time-settings 

    # Conflicts:
#	activitysim/abm/misc.py
#	activitysim/abm/models/accessibility.py
#	activitysim/abm/models/atwork_subtour_destination.py
#	activitysim/abm/models/atwork_subtour_mode_choice.py
#	activitysim/abm/models/atwork_subtour_scheduling.py
#	activitysim/abm/models/disaggregate_accessibility.py
#	activitysim/abm/models/free_parking.py
#	activitysim/abm/models/joint_tour_destination.py
#	activitysim/abm/models/joint_tour_frequency.py
#	activitysim/abm/models/location_choice.py
#	activitysim/abm/models/non_mandatory_destination.py
#	activitysim/abm/models/non_mandatory_tour_frequency.py
#	activitysim/abm/models/parking_location_choice.py
#	activitysim/abm/models/stop_frequency.py
#	activitysim/abm/models/tour_mode_choice.py
#	activitysim/abm/models/tour_od_choice.py
#	activitysim/abm/models/tour_scheduling_probabilistic.py
#	activitysim/abm/models/trip_departure_choice.py
#	activitysim/abm/models/trip_destination.py
#	activitysim/abm/models/trip_mode_choice.py
#	activitysim/abm/models/trip_scheduling_choice.py
#	activitysim/abm/models/util/annotate.py
#	activitysim/abm/models/util/logsums.py
#	activitysim/abm/models/util/mode.py
#	activitysim/abm/models/util/tour_destination.py
#	activitysim/abm/models/util/tour_od.py
#	activitysim/abm/models/util/trip.py
#	activitysim/abm/models/vehicle_allocation.py
#	activitysim/abm/models/vehicle_type_choice.py
#	activitysim/abm/tables/shadow_pricing.py
#	activitysim/core/config.py
#	activitysim/core/configuration/base.py
#	activitysim/core/configuration/filesystem.py
#	activitysim/core/configuration/network.py
#	activitysim/core/configuration/top.py
#	activitysim/core/estimation.py
#	activitysim/core/expressions.py
#	activitysim/core/interaction_sample.py
#	activitysim/core/interaction_sample_simulate.py
#	activitysim/core/logit.py
#	activitysim/core/los.py
#	activitysim/core/pathbuilder.py
#	activitysim/core/simulate.py
#	activitysim/core/skim_dataset.py
#	activitysim/core/steps/output.py
#	activitysim/core/test/test_logit.py
#	activitysim/core/test/utils_testing.py
#	activitysim/core/util.py
#	activitysim/core/workflow/checkpoint.py
#	activitysim/core/workflow/report.py
#	activitysim/core/workflow/runner.py
#	activitysim/core/workflow/state.py
#	activitysim/core/workflow/steps.py
#	activitysim/core/workflow/tracing.py
#	activitysim/core/workflow/util.py
#	activitysim/examples/production_semcog/configs/logging.yaml
#	activitysim/workflows/steps/run.py
#	docs/examples.rst
#	test/cdap/test_cdap.py
#	test/joint_tours/test_joint_tours.py
#	test/non_mandatory_tour_frequency/test_non_mandatory_tour_frequency.py
#	test/parking_location/test_parking_location.py
#	test/summarize/test_summarize.py
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Commits on Sep 7, 2023

  1. test commit

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Commits on Sep 8, 2023

  1. updating work from home documentation

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Commits on Sep 9, 2023

  1. update model settings of work from home model

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Commits on Sep 18, 2023

  1. school and work location choice documentation

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Commits on Sep 19, 2023

  1. auto ownership

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  2. accessibility documentation

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  3. format fix

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  4. Merge branch 'time-settings' into cfg-doc-2

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  5. auto_ownership is a logit model

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  6. docbuild uses pydantic 1.10

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  7. add more components to docs

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  8. ao docs [makedocs]

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  9. Adding examples to accessibility

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  10. Merge branch 'cfg-doc-2' into cfg-documentation-vy

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Commits on Oct 24, 2023

  1. updated transit pass subsidy model

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  2. Updating model components

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  3. update telecommute frequency

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  4. updating telecommute frequency and mandatory tour frequency

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  5. update joint tout composition

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  6. update joint tour participation. There is model_settings.get that nee… 

    …ds to be fixed.

choice_col = model_settings.get("participation_choice", "participate") #TODO
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  7. Update joint tour scheduling

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  8. Update non mandatory tour frequency. Needs closer review

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  9. update vehicle allocation and atwork subtour frequency

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  10. update several models

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Commits on Oct 27, 2023

  1. updated documentation for few models

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  2. Merge branch 'cfg-documentation-vy' into Branch_nav_cfg-documentation-vy

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  3. Updating component documentation

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    vivekyadav26 committed Oct 27, 2023
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  4. bug fix

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    vivekyadav26 committed Oct 27, 2023
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  5. fix bug

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    vivekyadav26 committed Oct 27, 2023
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  6. how to build docs [makedocs]

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Commits on Oct 30, 2023

  1. Added component documentation for more models

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  2. Merge branch 'cfg-documentation-vy' into Branch_nav_cfg-documentation-vy

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  3. Documented more model componets and added to index toctree

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  4. Model Component Documentation

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  5. updating stop frequency, trip purpose and trip scheduling documentation

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  6. Merge branch 'cfg-documentation-vy' into cfg-documentation-navjs

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  7. updating component documentation

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  8. Update vehicle allocation and build docs [makedocs]

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  9. documentation fixes [makedocs]

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  10. minor fixes [makedocs]

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  11. Added Documentation for more models

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  12. Adding annotate_tables settings class

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Commits on Oct 31, 2023

  1. Update cdap.md

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  2. Update disaggregate_accessibility.md

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  3. Update initialize.md

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  4. Update initialize_los.md

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  5. Update mandatory_scheduling.md

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  6. Update mandatory_tour_frequency.md

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  7. Update telecommute_frequency.md

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  8. Update telecommute_frequency.md

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  9. Update transit_pass_ownership.md

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  10. Update transit_pass_subsidy.md

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  11. Update vehicle_type_choice.md

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  12. Merge branch 'cfg-documentation-vy' into cfg-documentation-navjs

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  13. Merge pull request #11 from camsys/cfg-documentation-navjs 

    Updated Model Component Documentation
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  14. Updated documentation for joint tour compostion model

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  15. Merge branch 'cfg-documentation-navjs' of https://github.com/camsys/a… 

    …ctivitysim into cfg-documentation-navjs
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  16. Added documentation for more models and minor bug fixes

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Commits on Nov 1, 2023

  1. Update non_mandatory_scheduling.md

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  2. Merge pull request #12 from camsys/cfg-documentation-navjs 

    Model Documentation Updates and minor bug fixes
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Commits on Nov 6, 2023

  1. minor edits [makedocs]

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  2. verbose action [makedocs]

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  3. bump pytables to 3.9

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  4. pin autodoc_pydantic<2.0

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  5. [makedocs]

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  6. escorting

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Commits on Nov 7, 2023

  1. Merge pull request #13 from camsys/cfg-docs-jn-2 

    documentation builds better
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  2. [makedocs]

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  3. Merge branch 'cfg-documentation-vy' of https://github.com/camsys/acti… 

    …vitysim into cfg-documentation-vy
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  4. minor edits [makedocs]

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  5. test initialize

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  6. test

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  7. AnnotateTableSettings

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  8. init tables things

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  9. bug fixes [makedocs]

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Commits on Nov 9, 2023

  1. Merge branch 'cfg-documentation-vy' into cfg-docs-jn-escort

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  2. documentation updates [makedocs]

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  3. Merge commit '529a4df3f18c2f44d856b4339c7c391e503b7f67' into cfg-docs… 

    …-jn-escort
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  4. more precise type

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  5. fix jtp

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  6. adding size tables

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  7. read coefficients of mandatory tour frequency

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  8. Revert "read coefficients of mandatory tour frequency" 

    This reverts commit 2772d7e.
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  9. read coeff

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  10. NonMandatoryTourFrequencySettings as logit

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  11. Merge branch 'cfg-docs-jn-escort' into cfg-documentation-vy 

    # Conflicts:
#	activitysim/abm/models/initialize.py
#	activitysim/abm/models/mandatory_tour_frequency.py
#	activitysim/core/simulate.py
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  12. drop dupe MandatoryTourFrequencySettings

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Commits on Nov 10, 2023

  1. updating joint tour frequency composition

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  2. progress on tests

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  3. mostly through test1

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  4. fix summarize

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  5. fix tour schedule test

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  6. 3 zone settings for trip mode

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  7. fix annotate_table if missing

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  8. various fixing

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  9. TelecommuteFrequencySettings should be LogitComponentSettings

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  10. repair vehicle type settings

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  11. fix - trip scheduling choice

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  12. fixing

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  13. comment out unused settings

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  14. Initial commit for revised user guide, changes to user guide index an… 

    …d added new rst files for subsections
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  15. Merge commit '3d512f64a1df63435429fedd586764522a994826' into cfg-docu… 

    …mentation-vy

# Conflicts:
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  16. fix tests for mtc_extended

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Commits on Nov 11, 2023

  1. fix arc

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  2. partial disagg accessblty

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  3. disagg acc doesn't crash but different results

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  4. cdap settings

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  5. trip purpose

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  6. also constants

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Commits on Nov 12, 2023

  1. Merge commit '460203c5b54c597e4416bbef30d67fc2a9da3ee8' into cfg-docu… 

    …mentation-vy

# Conflicts:
#	activitysim/abm/models/util/logsums.py
#	activitysim/core/los.py
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Commits on Nov 13, 2023

  1. updating auto ownership [makedocs]

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  2. prefer float values so fractions are not swallowed

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  3. rollback to have AutoOwnership settings

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Commits on Nov 14, 2023

  1. JointTourFreqCompSettings

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  2. typos [makedocs]

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  3. more doc updates

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  4. update cdap

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  5. Merge branch 'cfg-documentation-vy' of https://github.com/camsys/acti… 

    …vitysim into cfg-documentation-vy
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  6. clean up disagg accesbly

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  7. format admonition [makedocs]

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  8. fix disagg acc

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Commits on Nov 15, 2023

  1. Updates to modelsetup documentation page in user-guide

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  2. Merge branch 'cfg-documentation-vy' into user-guide-doc-navjs

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Commits on Nov 16, 2023

  1. Updates to model run user guide documentation

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  2. User guide documentation updates (Ways to run the model)

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  3. Completed documentation of ways to run section in user guide

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Commits on Nov 18, 2023

  1. User guide documentation updates to examples section and other minor … 

    …bug fixes throughout the user guide
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  2. User guide documentation for visualization

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  3. User guide doc updates (how it works section in progress)

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  4. added Semcog model structure figure

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  5. text formatting

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  6. Merge branch 'user-guide-doc-navjs' of https://github.com/camsys/acti… 

    …vitysim into user-guide-doc-navjs
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  7. doc updates

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Commits on Nov 19, 2023

  1. Minor bug fixes in user guide doc

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Commits on Nov 20, 2023

  1. User guide documentation updates - added more sections and minor bug … 

    …fixes
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  2. Adding zone system [makedocs]

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  3. User guide documentation, minor bug fixes and updates

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  4. Merge branch 'user-guide-doc-navjs' into cfg-documentation-vy

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  5. [makedocs]

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Commits on Nov 26, 2023

  1. Updates to model setup and anatomy user guide documentation

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  2. Minor updates and bug fixes in Ways to Run Model user guide doc

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  3. Updates to Model anatomy user doc

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  4. Added flowchart in How it works section of user guide

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  5. Updates to howitworks section in user guide

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Commits on Nov 27, 2023

  1. Minor updates to example models user guide

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  2. Updating school escorting documentation

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  3. Minor updates to example models user guide - reorganization

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  4. Merge branch 'user-guide-doc-navjs' into cfg-documentation-vy

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  5. [makedocs]

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  6. Merge branch 'cfg-documentation-vy' into user-guide-doc-navjs

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  7. User guide updates

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  8. Merge branch 'user-guide-doc-navjs' into cfg-documentation-vy

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  9. [makedocs]

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  10. Removing tables as they are not being rendered properly [makedocs]

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Commits on Nov 28, 2023

  1. [makedocs]

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  2. [makedocs] Fixed broken image links in visualization user guide

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  3. adding tables and removing models.rst [makedocs]

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  4. error fix [makedocs]

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Commits on Dec 5, 2023

  1. Merge branch 'develop' into cfg-documentation-vy

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  2. fix estimation mode to use correct default SIZE_TERM_SELECTOR

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Commits on Dec 6, 2023

  1. drop buggy test for now

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Commits on Dec 11, 2023

  1. Updates to user guide - Minor additions and bug fixes.

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Commits on Dec 13, 2023

  1. Navigation bug fixes in Model Anatomy User guide

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  2. [makedocs]

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  3. Minor bug fixes and user guide improvements

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Commits on Dec 15, 2023

  1. [makedocs]

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Commits on Dec 21, 2023

  1. Updates to users guide - model setup page

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Commits on Dec 22, 2023

  1. Merge branch 'develop' of https://github.com/camsys/activitysim into … 

    …cfg-documentation-vy
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  2. User guide updates - example models section

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  3. [makedocs] Updates to userguide documentation

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Commits on Dec 28, 2023

  1. Merge branch 'cfg-documentation-vy' into user-guide-doc-navjs

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  2. Merge pull request #14 from camsys/user-guide-doc-navjs 

    User guide documentation updates
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  3. [makedocs]

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Commits on Jan 29, 2024

  1. harmonize on consistent read_file_settings

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  2. drop extra file load

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  3. InitializeToursSettings

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  4. use JointTourParticipationSettings

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  5. use TourModeComponentSettings for logsum_settings

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  6. remove old comment

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  7. add missing import

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  8. docstrings

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  9. bugfix

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Commits on Feb 1, 2024

  1. Merge branch 'develop' into cfg-documentation-vy 

    # Conflicts:
#	activitysim/abm/models/util/tour_frequency.py
#	activitysim/examples/production_semcog/configs/logging.yaml
#	conda-environments/activitysim-dev-base.yml
#	conda-environments/activitysim-dev.yml
#	conda-environments/docbuild.yml
#	docs/models.rst
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