don't use mamba in deploy job (#66) #197

Workflow file for this run

.github/workflows/run-tests.yml at 32856b0

	name: sharrow testing

	on:
	push:
	branches: [ main, develop ]
	tags:
	- 'v[0-9]+.[0-9]+**'
	pull_request:
	branches: [ main, develop ]
	tags:
	- 'v[0-9]+.[0-9]+**'
	workflow_dispatch:

	jobs:

	fmt:
	name: formatting quality
	runs-on: ubuntu-latest
	defaults:
	run:
	shell: bash -l {0}
	steps:
	- uses: actions/checkout@v4
	- uses: actions/setup-python@v5
	with:
	python-version: '3.11'
	- name: Install Ruff
	run: \|
	python -m pip install ruff
	- name: Lint with Ruff
	run: \|
	# code quality check, stop the build for any errors
	ruff check . --show-fixes --exit-non-zero-on-fix

	test-minimal:
	needs: fmt
	name: minimal tests
	runs-on: ubuntu-latest
	defaults:
	run:
	shell: bash -l {0}
	steps:
	- uses: actions/checkout@v4
	- uses: actions/setup-python@v5
	with:
	python-version: '3.11'
	- name: Install pytest
	run: \|
	python -m pip install pytest pytest-cov pytest-regressions pytest-xdist nbmake
	- name: Install sharrow
	run: \|
	python -m pip install .
	- name: Initial simple tests
	# tests that sharrow can be imported and that categorical tests can be run
	run: \|
	python -m pytest sharrow/tests/test_categorical.py
	- name: Install openmatrix
	run: \|
	python -m pip install openmatrix
	- name: Dataset tests
	# tests that the datasets can be read and that the tests can be run
	run: \|
	python -m pytest sharrow/tests/test_datasets.py
	- name: Install zarr and dask-diagnostics
	run: \|
	python -m pip install zarr "dask[diagnostics]"
	- name: More complete test with pytest
	run: \|
	python -m pytest -v --disable-warnings sharrow/tests

	test:
	needs: fmt
	name: ${{ matrix.os }} py${{ matrix.python-version }}
	runs-on: ${{ matrix.os }}
	strategy:
	matrix:
	os: ["ubuntu-latest", "macos-latest", "windows-latest"]
	python-version: ["3.10", "3.11", "3.12"]
	defaults:
	run:
	shell: bash -l {0}
	steps:
	- uses: actions/checkout@v4
	- name: Install Python and Dependencies
	uses: conda-incubator/setup-miniconda@v3
	with:
	miniforge-version: latest
	environment-file: envs/testing.yml
	python-version: ${{ matrix.python-version }}
	activate-environment: testing-env
	auto-activate-base: false
	auto-update-conda: false
	- name: Install sharrow
	run: \|
	python -m pip install -e .
	- name: Conda checkup
	run: \|
	conda info -a
	conda list
	- name: Lint with Ruff
	run: \|
	# code quality check
	# stop the build if there are Python syntax errors or undefined names
	ruff check . --select=E9,F63,F7,F82 --no-fix
	# stop the build for any other configured Ruff linting errors
	ruff check . --show-fixes --exit-non-zero-on-fix
	- name: Test with pytest
	run: \|
	python -m pytest

	deploy-docs:
	needs: test
	# only on pushes tagged with v...
	if: startsWith(github.ref, 'refs/tags/v')
	runs-on: ubuntu-latest
	environment: asim
	defaults:
	run:
	shell: bash -l {0}
	steps:
	- uses: actions/checkout@v4
	- name: Set up Python 3.10
	uses: actions/setup-python@v5
	with:
	python-version: "3.10"
	- name: Install dependencies
	uses: conda-incubator/setup-miniconda@v3
	with:
	miniforge-version: latest
	environment-file: envs/testing.yml
	python-version: "3.10"
	activate-environment: testing-env
	auto-activate-base: false
	auto-update-conda: false
	- name: Install Jupyterbook and ruamel.yaml
	run: \|
	conda install jupyter-book ruamel.yaml sphinx-autosummary-accessors -c conda-forge
	- name: Install sharrow
	run: \|
	python -m pip install --no-deps -e .
	- name: Conda checkup
	run: \|
	conda info -a
	conda list
	- name: Install pip build
	run: \|
	python -m pip install --upgrade build
	- name: Build wheel
	run: \|
	python -m build
	- name: Build the docs
	run: \|
	python docs/_script/run_all.py
	jupyter-book build ./docs
	- name: Push to GitHub Pages
	uses: peaceiris/actions-gh-pages@v3.5.9
	with:
	github_token: ${{ secrets.GITHUB_TOKEN }}
	# Token is created automatically by Github Actions, no other config needed
	publish_dir: ./docs/_build/html
	# now send to PyPI
	- name: Publish to PyPI
	uses: pypa/gh-action-pypi-publish@release/v1
	if: github.repository_owner == 'ActivitySim'
	with:
	user: __token__
	password: ${{ secrets.PYPI_API_TOKEN }}
	activitysim-examples:
	# test that updates to sharrow will not break the activitysim canonical examples
	needs: fmt
	env:
	python-version: "3.10"
	label: linux-64
	strategy:
	matrix:
	include:
	- region: ActivitySim 1-Zone Example (MTC)
	region-org: ActivitySim
	region-repo: activitysim-prototype-mtc
	region-branch: extended
	- region: ActivitySim 2-Zone Example (SANDAG)
	region-org: ActivitySim
	region-repo: sandag-abm3-example
	region-branch: main
	fail-fast: false
	defaults:
	run:
	shell: bash -l {0}
	name: ${{ matrix.region }}
	runs-on: ubuntu-latest
	steps:
	- name: Checkout Sharrow
	uses: actions/checkout@v4
	with:
	path: 'sharrow'

	- name: Checkout ActivitySim
	uses: actions/checkout@v4
	with:
	repository: 'ActivitySim/activitysim'
	ref: 'main'
	path: 'activitysim'

	- name: Setup Miniforge
	uses: conda-incubator/setup-miniconda@v3
	with:
	miniforge-version: latest
	activate-environment: asim-test
	python-version: ${{ env.python-version }}

	- name: Set cache date for year and month
	run: echo "DATE=$(date +'%Y%m')" >> $GITHUB_ENV

	- uses: actions/cache@v4
	with:
	path: \|
	${{ env.CONDA }}/envs
	~/.cache/ActivitySim
	key: ${{ env.label }}-conda-${{ hashFiles('activitysim/conda-environments/github-actions-tests.yml') }}-${{ env.DATE }}-${{ env.CACHE_NUMBER }}
	id: cache

	- name: Update environment
	run: \|
	conda env update -n asim-test -f activitysim/conda-environments/github-actions-tests.yml
	if: steps.cache.outputs.cache-hit != 'true'

	- name: Install sharrow
	# installing from source
	run: \|
	python -m pip install ./sharrow

	- name: Install activitysim
	# installing without dependencies is faster, we trust that all needed dependencies
	# are in the conda environment defined above. Also, this avoids pip getting
	# confused and reinstalling tables (pytables).
	run: \|
	python -m pip install ./activitysim --no-deps

	- name: Conda checkup
	run: \|
	conda info -a
	conda list

	- name: Checkout Example
	uses: actions/checkout@v4
	with:
	repository: '${{ matrix.region-org }}/${{ matrix.region-repo }}'
	ref: '${{ matrix.region-branch }}'
	path: '${{ matrix.region-repo }}'

	- name: Test ${{ matrix.region }}
	run: \|
	cd ${{ matrix.region-repo }}/test
	python -m pytest .

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don't use mamba in deploy job (#66) #197

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don't use mamba in deploy job (#66) #197

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