diff --git a/colormaps/CET-C1.csv b/colormaps/CET-C1.csv
new file mode 100644
index 0000000..86f9b4c
--- /dev/null
+++ b/colormaps/CET-C1.csv
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diff --git a/colormaps/CET-C1s.csv b/colormaps/CET-C1s.csv
new file mode 100644
index 0000000..6c95b4f
--- /dev/null
+++ b/colormaps/CET-C1s.csv
@@ -0,0 +1,256 @@
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diff --git a/colormaps/CET-C2.csv b/colormaps/CET-C2.csv
new file mode 100644
index 0000000..504ac89
--- /dev/null
+++ b/colormaps/CET-C2.csv
@@ -0,0 +1,256 @@
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diff --git a/colormaps/CET-C2s.csv b/colormaps/CET-C2s.csv
new file mode 100644
index 0000000..21edef8
--- /dev/null
+++ b/colormaps/CET-C2s.csv
@@ -0,0 +1,256 @@
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diff --git a/colormaps/CET-C3.csv b/colormaps/CET-C3.csv
new file mode 100644
index 0000000..28b92e0
--- /dev/null
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diff --git a/colormaps/CET-C3s.csv b/colormaps/CET-C3s.csv
new file mode 100644
index 0000000..28a6948
--- /dev/null
+++ b/colormaps/CET-C3s.csv
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diff --git a/colormaps/CET-C4.csv b/colormaps/CET-C4.csv
new file mode 100644
index 0000000..7d6eb2b
--- /dev/null
+++ b/colormaps/CET-C4.csv
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diff --git a/colormaps/CET-C4s.csv b/colormaps/CET-C4s.csv
new file mode 100644
index 0000000..66deb4c
--- /dev/null
+++ b/colormaps/CET-C4s.csv
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diff --git a/colormaps/CET-C5.csv b/colormaps/CET-C5.csv
new file mode 100644
index 0000000..1d83496
--- /dev/null
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diff --git a/colormaps/CET-C5s.csv b/colormaps/CET-C5s.csv
new file mode 100644
index 0000000..f9e7425
--- /dev/null
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diff --git a/colormaps/CET-C6.csv b/colormaps/CET-C6.csv
new file mode 100644
index 0000000..72ab297
--- /dev/null
+++ b/colormaps/CET-C6.csv
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diff --git a/colormaps/CET-C6s.csv b/colormaps/CET-C6s.csv
new file mode 100644
index 0000000..8f00991
--- /dev/null
+++ b/colormaps/CET-C6s.csv
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diff --git a/colormaps/CET-C7.csv b/colormaps/CET-C7.csv
new file mode 100644
index 0000000..1714779
--- /dev/null
+++ b/colormaps/CET-C7.csv
@@ -0,0 +1,256 @@
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diff --git a/colormaps/CET-C7s.csv b/colormaps/CET-C7s.csv
new file mode 100644
index 0000000..779861e
--- /dev/null
+++ b/colormaps/CET-C7s.csv
@@ -0,0 +1,256 @@
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diff --git a/colormaps/CET-CBC1.csv b/colormaps/CET-CBC1.csv
new file mode 100644
index 0000000..0993161
--- /dev/null
+++ b/colormaps/CET-CBC1.csv
@@ -0,0 +1,256 @@
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diff --git a/colormaps/CET-CBC2.csv b/colormaps/CET-CBC2.csv
new file mode 100644
index 0000000..54a93b9
--- /dev/null
+++ b/colormaps/CET-CBC2.csv
@@ -0,0 +1,256 @@
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diff --git a/colormaps/CET-CBD1.csv b/colormaps/CET-CBD1.csv
new file mode 100644
index 0000000..30e73f1
--- /dev/null
+++ b/colormaps/CET-CBD1.csv
@@ -0,0 +1,256 @@
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diff --git a/colormaps/CET-CBL1.csv b/colormaps/CET-CBL1.csv
new file mode 100644
index 0000000..54f2694
--- /dev/null
+++ b/colormaps/CET-CBL1.csv
@@ -0,0 +1,256 @@
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diff --git a/colormaps/CET-CBL2.csv b/colormaps/CET-CBL2.csv
new file mode 100644
index 0000000..48273e2
--- /dev/null
+++ b/colormaps/CET-CBL2.csv
@@ -0,0 +1,256 @@
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diff --git a/colormaps/CET-D01.csv b/colormaps/CET-D01.csv
new file mode 100644
index 0000000..7d89265
--- /dev/null
+++ b/colormaps/CET-D01.csv
@@ -0,0 +1,256 @@
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diff --git a/colormaps/CET-D01A.csv b/colormaps/CET-D01A.csv
new file mode 100644
index 0000000..150e9ca
--- /dev/null
+++ b/colormaps/CET-D01A.csv
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diff --git a/colormaps/CET-D02.csv b/colormaps/CET-D02.csv
new file mode 100644
index 0000000..e40ac59
--- /dev/null
+++ b/colormaps/CET-D02.csv
@@ -0,0 +1,256 @@
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diff --git a/colormaps/CET-D03.csv b/colormaps/CET-D03.csv
new file mode 100644
index 0000000..9612ceb
--- /dev/null
+++ b/colormaps/CET-D03.csv
@@ -0,0 +1,256 @@
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index 0000000..beeed84
--- /dev/null
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new file mode 100644
index 0000000..a049130
--- /dev/null
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new file mode 100644
index 0000000..2ebf3f3
--- /dev/null
+++ b/colormaps/CET-D08.csv
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diff --git a/colormaps/CET-D09.csv b/colormaps/CET-D09.csv
new file mode 100644
index 0000000..f6f5289
--- /dev/null
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diff --git a/colormaps/CET-D10.csv b/colormaps/CET-D10.csv
new file mode 100644
index 0000000..5ca0ecf
--- /dev/null
+++ b/colormaps/CET-D10.csv
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diff --git a/colormaps/CET-D11.csv b/colormaps/CET-D11.csv
new file mode 100644
index 0000000..75e0ddb
--- /dev/null
+++ b/colormaps/CET-D11.csv
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diff --git a/colormaps/CET-D12.csv b/colormaps/CET-D12.csv
new file mode 100644
index 0000000..eabfaa4
--- /dev/null
+++ b/colormaps/CET-D12.csv
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diff --git a/colormaps/CET-D13.csv b/colormaps/CET-D13.csv
new file mode 100644
index 0000000..a159dac
--- /dev/null
+++ b/colormaps/CET-D13.csv
@@ -0,0 +1,256 @@
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diff --git a/colormaps/CET-I1.csv b/colormaps/CET-I1.csv
new file mode 100644
index 0000000..0b958ef
--- /dev/null
+++ b/colormaps/CET-I1.csv
@@ -0,0 +1,256 @@
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diff --git a/colormaps/CET-I2.csv b/colormaps/CET-I2.csv
new file mode 100644
index 0000000..6dc18c2
--- /dev/null
+++ b/colormaps/CET-I2.csv
@@ -0,0 +1,256 @@
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diff --git a/colormaps/CET-I3.csv b/colormaps/CET-I3.csv
new file mode 100644
index 0000000..e53dd4a
--- /dev/null
+++ b/colormaps/CET-I3.csv
@@ -0,0 +1,256 @@
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new file mode 100644
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new file mode 100644
index 0000000..6866f91
--- /dev/null
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new file mode 100644
index 0000000..fde872b
--- /dev/null
+++ b/colormaps/CET-L05.csv
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diff --git a/colormaps/CET-L06.csv b/colormaps/CET-L06.csv
new file mode 100644
index 0000000..571ba59
--- /dev/null
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diff --git a/colormaps/CET-L07.csv b/colormaps/CET-L07.csv
new file mode 100644
index 0000000..379199c
--- /dev/null
+++ b/colormaps/CET-L07.csv
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diff --git a/colormaps/CET-L08.csv b/colormaps/CET-L08.csv
new file mode 100644
index 0000000..236abd0
--- /dev/null
+++ b/colormaps/CET-L08.csv
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new file mode 100644
index 0000000..6aaebcc
--- /dev/null
+++ b/colormaps/CET-L09.csv
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diff --git a/colormaps/CET-L10.csv b/colormaps/CET-L10.csv
new file mode 100644
index 0000000..1183c3b
--- /dev/null
+++ b/colormaps/CET-L10.csv
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diff --git a/colormaps/CET-L11.csv b/colormaps/CET-L11.csv
new file mode 100644
index 0000000..8cbb23a
--- /dev/null
+++ b/colormaps/CET-L11.csv
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new file mode 100644
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--- /dev/null
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diff --git a/colormaps/CET-L13.csv b/colormaps/CET-L13.csv
new file mode 100644
index 0000000..d9d4502
--- /dev/null
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diff --git a/colormaps/CET-L14.csv b/colormaps/CET-L14.csv
new file mode 100644
index 0000000..ca76b97
--- /dev/null
+++ b/colormaps/CET-L14.csv
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diff --git a/colormaps/CET-L15.csv b/colormaps/CET-L15.csv
new file mode 100644
index 0000000..13213c7
--- /dev/null
+++ b/colormaps/CET-L15.csv
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new file mode 100644
index 0000000..50702c6
--- /dev/null
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new file mode 100644
index 0000000..dc9ce8e
--- /dev/null
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diff --git a/colormaps/CET-L18.csv b/colormaps/CET-L18.csv
new file mode 100644
index 0000000..392013e
--- /dev/null
+++ b/colormaps/CET-L18.csv
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diff --git a/colormaps/CET-L19.csv b/colormaps/CET-L19.csv
new file mode 100644
index 0000000..035abd3
--- /dev/null
+++ b/colormaps/CET-L19.csv
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diff --git a/colormaps/CET-L20.csv b/colormaps/CET-L20.csv
new file mode 100644
index 0000000..c0e76ff
--- /dev/null
+++ b/colormaps/CET-L20.csv
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diff --git a/colormaps/CET-R1.csv b/colormaps/CET-R1.csv
new file mode 100644
index 0000000..536afe8
--- /dev/null
+++ b/colormaps/CET-R1.csv
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diff --git a/colormaps/CET-R2.csv b/colormaps/CET-R2.csv
new file mode 100644
index 0000000..27fdcc3
--- /dev/null
+++ b/colormaps/CET-R2.csv
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diff --git a/colormaps/CET-R3.csv b/colormaps/CET-R3.csv
new file mode 100644
index 0000000..4a14f35
--- /dev/null
+++ b/colormaps/CET-R3.csv
@@ -0,0 +1,256 @@
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diff --git a/colormaps/CET-R4.csv b/colormaps/CET-R4.csv
new file mode 100644
index 0000000..a2e9832
--- /dev/null
+++ b/colormaps/CET-R4.csv
@@ -0,0 +1,256 @@
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diff --git a/colormaps/rainbow.csv b/colormaps/rainbow.csv
new file mode 100644
index 0000000..6a98269
--- /dev/null
+++ b/colormaps/rainbow.csv
@@ -0,0 +1,256 @@
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\ No newline at end of file
diff --git a/colormaps/rainbow2.csv b/colormaps/rainbow2.csv
new file mode 100644
index 0000000..16aec6a
--- /dev/null
+++ b/colormaps/rainbow2.csv
@@ -0,0 +1,256 @@
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diff --git a/src/core/ColorMap.cpp b/src/core/ColorMap.cpp
new file mode 100644
index 0000000..4bc86f7
--- /dev/null
+++ b/src/core/ColorMap.cpp
@@ -0,0 +1,147 @@
+/*
+* Copyright (c) 2016, UChicago Argonne, LLC. All rights reserved.
+*
+* Copyright 2016. UChicago Argonne, LLC. This software was produced 
+* under U.S. Government contract DE-AC02-06CH11357 for Argonne National 
+* Laboratory (ANL), which is operated by UChicago Argonne, LLC for the 
+* U.S. Department of Energy. The U.S. Government has rights to use, 
+* reproduce, and distribute this software.  NEITHER THE GOVERNMENT NOR 
+* UChicago Argonne, LLC MAKES ANY WARRANTY, EXPRESS OR IMPLIED, OR 
+* ASSUMES ANY LIABILITY FOR THE USE OF THIS SOFTWARE.  If software is 
+* modified to produce derivative works, such modified software should 
+* be clearly marked, so as not to confuse it with the version available 
+* from ANL.
+
+* Additionally, redistribution and use in source and binary forms, with 
+* or without modification, are permitted provided that the following 
+* conditions are met:
+*
+*   * Redistributions of source code must retain the above copyright 
+*     notice, this list of conditions and the following disclaimer. 
+*
+*   * Redistributions in binary form must reproduce the above copyright 
+*     notice, this list of conditions and the following disclaimer in 
+*     the documentation and/or other materials provided with the 
+*     distribution. 
+*
+*   * Neither the name of UChicago Argonne, LLC, Argonne National 
+*     Laboratory, ANL, the U.S. Government, nor the names of its 
+*     contributors may be used to endorse or promote products derived 
+*     from this software without specific prior written permission. 
+
+* THIS SOFTWARE IS PROVIDED BY UChicago Argonne, LLC AND CONTRIBUTORS 
+* "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT 
+* LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS 
+* FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL UChicago 
+* Argonne, LLC OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, 
+* INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, 
+* BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; 
+* LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER 
+* CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT 
+* LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN 
+* ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE 
+* POSSIBILITY OF SUCH DAMAGE.
+*/
+
+#include <core/ColorMap.h>
+#include "core/defines.h"
+#include <QCoreApplication>
+#include <QTextStream>
+#include <QStringList>
+#include <QDir>
+
+/*---------------------------------------------------------------------------*/
+
+ColorMap* ColorMap::_inst = nullptr;
+
+ColorMap::ColorMap()
+{
+
+
+}
+
+/*---------------------------------------------------------------------------*/
+
+ColorMap::~ColorMap()
+{
+    
+    
+}
+
+/*---------------------------------------------------------------------------*/
+
+ColorMap* ColorMap::inst()
+{
+
+    if (_inst == nullptr)
+        _inst = new ColorMap();
+
+    return _inst;
+
+}
+
+/*---------------------------------------------------------------------------*/
+
+QVector<QRgb>* ColorMap::get_color_map(QString name)
+{
+    if (_color_maps.count(name) > 0)
+    {
+        return &_color_maps[name];
+    }
+    return nullptr;
+}
+
+/*---------------------------------------------------------------------------*/
+
+void ColorMap::reload_color_maps()
+{
+    QString colormapDir = QCoreApplication::applicationDirPath();
+    QDir directory(colormapDir);
+    directory.cd("../colormaps");
+    
+    if (!directory.exists())
+    {
+            QString warn_msg = "Cannot find the "+ colormapDir +" directory";
+            qWarning(warn_msg.toStdString().c_str());
+            //logW<< "Cannot find the " << directory.path()<<"\n";
+            return;
+    }
+    directory.setFilter(QDir::Files | QDir::NoSymLinks);
+
+    QFileInfoList list = directory.entryInfoList();
+
+    for (int i = 0; i < list.size(); ++i)
+    {
+        QFileInfo fileInfo = list.at(i);
+        if (fileInfo.suffix() == "csv")
+        {
+            QFile inputFile(fileInfo.absoluteFilePath());
+            if (inputFile.open(QIODevice::ReadOnly))
+            {
+                QVector<QRgb> vrgb;
+                QTextStream in(&inputFile);
+                while (!in.atEnd())
+                {
+                    QString line = in.readLine();
+                    QStringList values = line.split(',');
+                    if (values.size() == 3)
+                    {
+                        vrgb.append(qRgb(values[0].toInt(), values[1].toInt(), values[2].toInt()));
+                    }
+                }
+                inputFile.close();
+                _color_maps[fileInfo.baseName()] = vrgb;
+            }
+            else
+            {
+                QString warn_msg = "Cannot open colormap " + fileInfo.absoluteFilePath();
+                qWarning(warn_msg.toStdString().c_str());
+            }
+           
+            
+        }
+    }
+
+}
+
+/*---------------------------------------------------------------------------*/
\ No newline at end of file
diff --git a/src/core/ColorMap.h b/src/core/ColorMap.h
new file mode 100644
index 0000000..374b471
--- /dev/null
+++ b/src/core/ColorMap.h
@@ -0,0 +1,98 @@
+/*
+* Copyright (c) 2016, UChicago Argonne, LLC. All rights reserved.
+*
+* Copyright 2016. UChicago Argonne, LLC. This software was produced 
+* under U.S. Government contract DE-AC02-06CH11357 for Argonne National 
+* Laboratory (ANL), which is operated by UChicago Argonne, LLC for the 
+* U.S. Department of Energy. The U.S. Government has rights to use, 
+* reproduce, and distribute this software.  NEITHER THE GOVERNMENT NOR 
+* UChicago Argonne, LLC MAKES ANY WARRANTY, EXPRESS OR IMPLIED, OR 
+* ASSUMES ANY LIABILITY FOR THE USE OF THIS SOFTWARE.  If software is 
+* modified to produce derivative works, such modified software should 
+* be clearly marked, so as not to confuse it with the version available 
+* from ANL.
+
+* Additionally, redistribution and use in source and binary forms, with 
+* or without modification, are permitted provided that the following 
+* conditions are met:
+*
+*   * Redistributions of source code must retain the above copyright 
+*     notice, this list of conditions and the following disclaimer. 
+*
+*   * Redistributions in binary form must reproduce the above copyright 
+*     notice, this list of conditions and the following disclaimer in 
+*     the documentation and/or other materials provided with the 
+*     distribution. 
+*
+*   * Neither the name of UChicago Argonne, LLC, Argonne National 
+*     Laboratory, ANL, the U.S. Government, nor the names of its 
+*     contributors may be used to endorse or promote products derived 
+*     from this software without specific prior written permission. 
+
+* THIS SOFTWARE IS PROVIDED BY UChicago Argonne, LLC AND CONTRIBUTORS 
+* "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT 
+* LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS 
+* FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL UChicago 
+* Argonne, LLC OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, 
+* INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, 
+* BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; 
+* LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER 
+* CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT 
+* LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN 
+* ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE 
+* POSSIBILITY OF SUCH DAMAGE.
+*/
+
+#ifndef _COLOR_MAP_H
+#define _COLOR_MAP_H
+
+#include <map>
+#include <QString>
+#include <QVector>
+#include <QRgb>
+
+/*---------------------------------------------------------------------------*/
+/*---------------------------------------------------------------------------*/
+
+/**
+ * @brief Singleton class to call python scripts.
+ *
+ */
+class ColorMap
+{
+
+public:
+   /**
+    * Destructor.
+    */
+   ~ColorMap();
+
+   /**
+    * @brief inst
+    * @return
+    */
+   static ColorMap* inst();
+
+   void reload_color_maps();
+
+   const std::map<QString, QVector<QRgb> >* color_maps() { return &_color_maps; }
+
+   QVector<QRgb>* get_color_map(QString name);
+private:
+
+   /**
+    * Constructor.
+    */
+    ColorMap();
+
+    static ColorMap* _inst;
+
+    std::map<QString, QVector<QRgb> > _color_maps;
+
+};
+
+/*---------------------------------------------------------------------------*/
+
+#endif
+
+/*---------------------------------------------------------------------------*/
diff --git a/src/core/uProbeX.cpp b/src/core/uProbeX.cpp
index 76d472b..322e40e 100644
--- a/src/core/uProbeX.cpp
+++ b/src/core/uProbeX.cpp
@@ -19,6 +19,7 @@
 #include <core/uProbeX.h>
 #include <mvc/AbstractWindowController.h>
 #include <core/SubWindow.h>
+#include <core/ColorMap.h>
 #include <mvc/SWSModel.h>
 #include <mvc/VLM_Widget.h>
 #include <preferences/PreferencesDialog.h>
@@ -102,6 +103,8 @@ uProbeX::uProbeX(QWidget* parent, Qt::WindowFlags flags) : QMainWindow(parent, f
     m_mdiArea->setSizePolicy(QSizePolicy::Expanding,QSizePolicy::Expanding);
     setCentralWidget(m_mdiArea);
 
+    ColorMap::inst()->reload_color_maps();
+
     show();
 }
 
diff --git a/src/gstar/AbstractImageWidget.cpp b/src/gstar/AbstractImageWidget.cpp
index b8a6284..10e6aab 100644
--- a/src/gstar/AbstractImageWidget.cpp
+++ b/src/gstar/AbstractImageWidget.cpp
@@ -72,8 +72,8 @@ AbstractImageWidget::AbstractImageWidget(int rows, int cols, QWidget* parent)
            SLOT(treeDoubleClicked(const QModelIndex &)));
 
    m_imageViewWidget = new ImageViewWidget(rows, cols);
-   m_imageViewWidget->scene()->setModel(m_treeModel);
-   m_imageViewWidget->scene()->setSelectionModel(m_selectionModel);
+   m_imageViewWidget->setSceneModel(m_treeModel);
+   m_imageViewWidget->setSceneSelectionModel(m_selectionModel);
    m_imageViewWidget->setContextMenuPolicy(Qt::CustomContextMenu);
    connect(m_imageViewWidget,
           SIGNAL(customContextMenuRequested(const QPoint &)),
@@ -99,6 +99,8 @@ AbstractImageWidget::AbstractImageWidget(int rows, int cols, QWidget* parent)
 AbstractImageWidget::~AbstractImageWidget()
 {
 
+    m_imageViewWidget->setSceneSelectionModel(nullptr);
+
    if(m_treeModel != nullptr)
    {
       delete m_treeModel;
@@ -497,7 +499,7 @@ void AbstractImageWidget::setAnnotationModel(AnnotationTreeModel *model)
 
    m_treeModel = model;
    m_annoTreeView->setModel(m_treeModel);
-   m_imageViewWidget->scene()->setModel(m_treeModel);
+   m_imageViewWidget->setSceneModel(m_treeModel);
 
 }
 
@@ -545,7 +547,7 @@ void AbstractImageWidget::setAnnotationsEnabled(bool value)
 {
 
    m_annoTreeView->setEnabled(value);
-   m_imageViewWidget->scene()->enableAnnotations(value);
+   m_imageViewWidget->sceneEnableAnnotations(value);
    m_annotationsEnabled = value;
 
 }
@@ -636,10 +638,10 @@ void AbstractImageWidget::showRulerUnitsDialog()
    // Update with current settings
    if (dialog->exec() == QDialog::Accepted)
    {
-      m_imageViewWidget->scene()->setUnitsLabel(dialog->getUnitLabel());
-      m_imageViewWidget->scene()->setUnitsPerPixelX(dialog->getUnitsPerPixelX());
-      m_imageViewWidget->scene()->setUnitsPerPixelY(dialog->getUnitsPerPixelY());
-      m_imageViewWidget->scene()->updateModel();
+      m_imageViewWidget->setSceneUnitsLabel(dialog->getUnitLabel());
+      m_imageViewWidget->setSceneUnitsPerPixelX(dialog->getUnitsPerPixelX());
+      m_imageViewWidget->setSceneUnitsPerPixelY(dialog->getUnitsPerPixelY());
+      m_imageViewWidget->sceneUpdateModel();
       emit rulerUnitsChanged(dialog->getUnitLabel(),
                              dialog->getUnitsPerPixelX(),
                              dialog->getUnitsPerPixelY());
@@ -693,7 +695,7 @@ void AbstractImageWidget::updateFrame(QImage *img)
     if (img != nullptr)
     {
         // Create pixmap from image
-        m_imageViewWidget->scene()->setPixmap(QPixmap::fromImage(img->convertToFormat(QImage::Format_RGB32)));
+        m_imageViewWidget->setScenetPixmap(QPixmap::fromImage(img->convertToFormat(QImage::Format_RGB32)));
     }
 
 }
@@ -708,3 +710,4 @@ void AbstractImageWidget::viewContextMenu(const QPoint& pos)
 }
 
 /*---------------------------------------------------------------------------*/
+/*---------------------------------------------------------------------------*/
\ No newline at end of file
diff --git a/src/gstar/Annotation/AbstractGraphicsItem.cpp b/src/gstar/Annotation/AbstractGraphicsItem.cpp
index 5c4691a..6aec9af 100644
--- a/src/gstar/Annotation/AbstractGraphicsItem.cpp
+++ b/src/gstar/Annotation/AbstractGraphicsItem.cpp
@@ -62,17 +62,37 @@ AbstractGraphicsItem::~AbstractGraphicsItem()
 void AbstractGraphicsItem::appendChild(AbstractGraphicsItem* child)
 {
 
-   m_children.append(child);
+    if (child != nullptr)
+    {
+        m_children.append(child);
+    }
+}
+
+/*---------------------------------------------------------------------------*/
 
+void AbstractGraphicsItem::appendLinkedDisplayChild(AbstractGraphicsItem* child)
+{
+    _linkedDisplayChildren.push_back(child);
 }
 
 /*---------------------------------------------------------------------------*/
 
-void AbstractGraphicsItem::appendProperty(AnnotationProperty* prop)
+void AbstractGraphicsItem::removeLinkedDisplayChild(AbstractGraphicsItem* child)
 {
+    if (_linkedDisplayChildren.contains(child))
+    {
+        _linkedDisplayChildren.removeAll(child);
+    }
+}
 
-   m_data.push_back(prop);
+/*---------------------------------------------------------------------------*/
 
+void AbstractGraphicsItem::appendProperty(AnnotationProperty* prop)
+{
+    if (prop != nullptr)
+    {
+        m_data.push_back(prop);
+    }
 }
 
 /*---------------------------------------------------------------------------*/
@@ -126,6 +146,17 @@ void AbstractGraphicsItem::clearProperties()
 
 /*---------------------------------------------------------------------------*/
 
+void AbstractGraphicsItem::linkProperties(QList<AnnotationProperty*> prop_list)
+{
+    foreach(AnnotationProperty * prop, prop_list)
+    {
+        _linked_props.push_back(prop);
+    }
+    connectAllLinkedProperties();
+}
+
+/*---------------------------------------------------------------------------*/
+
 int AbstractGraphicsItem::columnCount() const
 {
 
@@ -141,15 +172,47 @@ void AbstractGraphicsItem::connectAllProperties()
    foreach (AnnotationProperty* prop, m_data)
    {
       connect(prop,
-              SIGNAL(valueChanged()),
+              SIGNAL(valueChanged(AnnotationProperty*, QVariant)),
               this,
-              SLOT(modelChanged()));
+              SLOT(modelChanged(AnnotationProperty*, QVariant)));
    }
 
 }
 
 /*---------------------------------------------------------------------------*/
 
+void AbstractGraphicsItem::connectAllLinkedProperties()
+{
+
+    foreach(AnnotationProperty * prop, _linked_props)
+    {
+        connect(prop, SIGNAL(valueChanged(AnnotationProperty*, QVariant)), this, SLOT(linkPropChanged(AnnotationProperty*, QVariant)));
+    }
+
+}
+
+/*---------------------------------------------------------------------------*/
+
+void AbstractGraphicsItem::disconnectAllLinkedProperties()
+{
+
+    foreach(AnnotationProperty * prop, _linked_props)
+    {
+        disconnect(prop, SIGNAL(valueChanged(AnnotationProperty*, QVariant)), this, SLOT(linkPropChanged(AnnotationProperty*, QVariant)));
+    }
+
+}
+
+/*---------------------------------------------------------------------------*/
+
+void AbstractGraphicsItem::unlinkAllAnnotations()
+{
+    disconnectAllLinkedProperties();
+    _linked_props.clear();
+}
+
+/*---------------------------------------------------------------------------*/
+
 void AbstractGraphicsItem::connectAllViewItems()
 {
 
@@ -238,9 +301,9 @@ void AbstractGraphicsItem::disconnectAllProperties()
    foreach (AnnotationProperty* prop, m_data)
    {
       disconnect(prop,
-                 SIGNAL(valueChanged()),
+                 SIGNAL(valueChanged(AnnotationProperty*, QVariant)),
                  this,
-                 SLOT(modelChanged()));
+                 SLOT(modelChanged(AnnotationProperty*, QVariant)));
    }
 
 }
@@ -452,8 +515,10 @@ QVariant AbstractGraphicsItem::itemChange(GraphicsItemChange change,
 
 /*---------------------------------------------------------------------------*/
 
-void AbstractGraphicsItem::modelChanged()
+void AbstractGraphicsItem::modelChanged(AnnotationProperty* prop, QVariant val)
 {
+    Q_UNUSED(prop);
+    Q_UNUSED(val);
 
    disconnectAllViewItems();
    disconnectAllProperties();
@@ -465,6 +530,22 @@ void AbstractGraphicsItem::modelChanged()
 
 /*---------------------------------------------------------------------------*/
 
+void AbstractGraphicsItem::linkPropChanged(AnnotationProperty* prop, QVariant val)
+{
+    disconnectAllLinkedProperties();
+    foreach(AnnotationProperty * p, m_data)
+    {
+        if (p->getName() == prop->getName())
+        {
+            p->setValue(val);
+            break;
+        }
+    }
+    connectAllLinkedProperties();
+}
+
+/*---------------------------------------------------------------------------*/
+
 AbstractGraphicsItem* AbstractGraphicsItem::parent() const
 {
 
diff --git a/src/gstar/Annotation/AbstractGraphicsItem.h b/src/gstar/Annotation/AbstractGraphicsItem.h
index 1bde844..dac3172 100644
--- a/src/gstar/Annotation/AbstractGraphicsItem.h
+++ b/src/gstar/Annotation/AbstractGraphicsItem.h
@@ -52,6 +52,9 @@ class AbstractGraphicsItem : public QGraphicsObject
     */
    void appendChild(AbstractGraphicsItem* child);
 
+   void appendLinkedDisplayChild(AbstractGraphicsItem* child);
+
+   void removeLinkedDisplayChild(AbstractGraphicsItem* child);
    /**
     * @brief appendProperty : Add a property.
     * @param prop : Property to add.
@@ -136,6 +139,10 @@ class AbstractGraphicsItem : public QGraphicsObject
     */
    Qt::ItemFlags displayFlags(int row, int column) const;
 
+   const QList<AbstractGraphicsItem*>& getLinkedDisplayChildren() { return _linkedDisplayChildren; }
+
+   void clearLinkedDisplayChildren() { return _linkedDisplayChildren.clear(); }
+
    /**
     * @brief hasChild : Returns if it contains the specific child in its list.
     * @param child : Child node to check if exists in list.
@@ -223,6 +230,13 @@ class AbstractGraphicsItem : public QGraphicsObject
     */
    void setPropertyValue(QString name, QVariant value);
 
+   /**
+   * Override current properties with new list
+   */
+   void linkProperties(QList<AnnotationProperty*> prop_list);
+
+   void unlinkAllAnnotations();
+
 public slots:
 
    /**
@@ -257,7 +271,9 @@ protected slots:
    /**
     * @brief modelChanged : Slot for AnnotationProperty changes.
     */
-   void modelChanged();
+   void modelChanged(AnnotationProperty*, QVariant);
+
+   void linkPropChanged(AnnotationProperty*, QVariant);
 
    /**
     * @brief viewChanged : Slot for QGraphicsItem changes.
@@ -271,6 +287,9 @@ protected slots:
     */
    void connectAllProperties();
 
+   void connectAllLinkedProperties();
+
+   void disconnectAllLinkedProperties();
    /**
     * @brief connectAllViewItems : Connects QGraphicsItem signals to
     *                               viewChanged() slot.
@@ -320,11 +339,16 @@ protected slots:
     */
    QList<AnnotationProperty*> m_data;
 
+
+   QList<AnnotationProperty*> _linked_props;
+
    /**
     * @brief m_parent : Parent node.
     */
    AbstractGraphicsItem* m_parent;
 
+   QList<AbstractGraphicsItem*> _linkedDisplayChildren;
+
    /**
     * @brief m_decimalPreci
     */
diff --git a/src/gstar/Annotation/RoiMaskGraphicsItem.cpp b/src/gstar/Annotation/RoiMaskGraphicsItem.cpp
new file mode 100644
index 0000000..68d021c
--- /dev/null
+++ b/src/gstar/Annotation/RoiMaskGraphicsItem.cpp
@@ -0,0 +1,338 @@
+/*-----------------------------------------------------------------------------
+ * Copyright (c) 2013, UChicago Argonne, LLC
+ * See LICENSE file.
+ *---------------------------------------------------------------------------*/
+
+#include "gstar/Annotation/RoiMaskGraphicsItem.h"
+
+#include "gstar/AnnotationProperty.h"
+#include "gstar/ImageViewScene.h"
+
+#include <math.h>
+#include <QLineF>
+
+using namespace gstar;
+
+/*---------------------------------------------------------------------------*/
+
+RoiMaskGraphicsItem::RoiMaskGraphicsItem(int width, int height, AbstractGraphicsItem* parent)
+   : AbstractGraphicsItem(parent)
+{
+
+    setFlags( ItemIsSelectable );
+
+    _mouse_down = false;
+
+    _mask = new QImage(width, height, QImage::Format_ARGB32);
+    for(int w=0; w<width; w++)
+    {
+        for(int h=0; h<height; h++)
+        {
+            _mask->setPixelColor(w,h, QColor(0,0,0,0));
+        }
+    }
+
+   _enable_mask = new AnnotationProperty();
+   _enable_mask->setName("Enable");
+   _enable_mask->setValue(true);
+
+   _display_mask = new AnnotationProperty();
+   _display_mask->setName("Visible");
+   _display_mask->setValue(true);
+   /*
+   _draw_mask = new AnnotationProperty();
+   _draw_mask->setName("Draw");
+   _draw_mask->setValue(false);
+
+   _erase_mask = new AnnotationProperty();
+   _erase_mask->setName("Erase");
+   _erase_mask->setValue(false);
+   */
+   _alpha_value = new AnnotationProperty();
+   _alpha_value->setName("Alpha %");
+   _alpha_value->setValue(70);
+
+   //connect(_draw_mask, SIGNAL(valueChanged()), this ,SLOT(drawmask_changed()));
+   //connect(_erase_mask, SIGNAL(valueChanged()), this ,SLOT(erasemask_changed()));
+
+   m_data.push_back(_enable_mask);
+   m_data.push_back(_display_mask);
+   //m_data.push_back(_draw_mask);
+   //m_data.push_back(_erase_mask);
+   m_data.push_back(_alpha_value);
+
+}
+
+/*---------------------------------------------------------------------------*/
+
+RoiMaskGraphicsItem::~RoiMaskGraphicsItem()
+{
+    emit (mask_updated(this, false));
+}
+
+/*---------------------------------------------------------------------------*/
+
+QString RoiMaskGraphicsItem::getName()
+{
+
+    for (const auto& itr : m_data)
+    {
+        if (itr->getName() == DEF_STR_DISPLAY_NAME)
+            return itr->getValue().toString();
+    }
+    return "";
+
+}
+
+/*---------------------------------------------------------------------------*/
+
+void RoiMaskGraphicsItem::calculate()
+{
+/*
+   QString unitsLabel = "";
+   double unitsPerPixelX = 1.0;
+   double unitsPerPixelY = 1.0;
+
+   //get units per pixel from scene
+   QGraphicsScene* bScene = scene();
+   if (bScene != nullptr)
+   {
+      ImageViewScene* iScene = dynamic_cast<ImageViewScene*>(bScene);
+      if (iScene != nullptr)
+      {
+         unitsLabel = iScene->getUnitsLabel();
+         unitsPerPixelX = iScene->getUnitsPerPixelX();
+         unitsPerPixelY = iScene->getUnitsPerPixelY();
+      }
+   }
+
+   double dx = m_line->line().dx();
+   double dy = m_line->line().dy();
+   dx *= unitsPerPixelX;
+   dy *= unitsPerPixelY;
+
+   double len = sqrt( (dx * dx) + (dy * dy) );
+   m_text = QString("%1%2").arg(len).arg(unitsLabel);
+   m_length->setValue(m_text);
+*/
+}
+
+
+/*---------------------------------------------------------------------------*/
+
+void RoiMaskGraphicsItem::updateModel()
+{
+    update();
+}
+
+/*---------------------------------------------------------------------------*/
+
+void RoiMaskGraphicsItem::updateView()
+{
+    int val = _alpha_value->getValue().toInt();
+
+    val = std::min(val, 100);
+    val = std::max(val, 0);
+
+    _alpha_value->setValue(val);
+
+    val = (int)(((float)val / 100.0) * 255.0);
+
+    for(int w=0; w<_mask->width(); w++)
+    {
+        for(int h=0; h<_mask->height(); h++)
+        {
+            QColor c = _mask->pixelColor(w,h);
+            if(c.green() > 0)
+            {
+                c.setAlpha(val);
+                _mask->setPixelColor(w,h, c);
+            }
+        }
+    }
+    update();
+    emit(mask_updated(this, false));
+}
+
+/*---------------------------------------------------------------------------*/
+
+void RoiMaskGraphicsItem::drawmask_changed()
+{
+    /*
+    bool val = _draw_mask->getValue().toBool();
+    if(val == true)
+    {
+        _erase_mask->setValue(false);
+        updateModel();
+    }
+    */
+}
+
+/*---------------------------------------------------------------------------*/
+
+std::vector<QPoint> RoiMaskGraphicsItem::get_mask_list()
+{
+    std::vector<QPoint> roi_list;
+    for (int w = 0; w < _mask->width(); w++)
+    {
+        for (int h = 0; h < _mask->height(); h++)
+        {
+            QColor c = _mask->pixelColor(w, h);
+            if (c.green() > 0)
+            {
+                roi_list.push_back(QPoint(w,h));
+            }
+        }
+    }
+    return roi_list;
+}
+
+/*---------------------------------------------------------------------------*/
+
+void RoiMaskGraphicsItem::erasemask_changed()
+{
+    /*
+    bool val = _erase_mask->getValue().toBool();
+    if(val == true)
+    {
+        _draw_mask->setValue(false);
+        updateModel();
+    }
+    */
+}
+
+/*---------------------------------------------------------------------------*/
+
+QRectF RoiMaskGraphicsItem::boundingRect() const
+{
+
+   return _mask->rect();
+
+}
+
+/*---------------------------------------------------------------------------*/
+
+QRectF RoiMaskGraphicsItem::boundingRectMarker() const
+{
+
+   return _mask->rect();
+
+}
+
+/*---------------------------------------------------------------------------*/
+
+const QString RoiMaskGraphicsItem::displayName() const
+{
+
+   const QString name = QString("ROI Spectra");
+   return name;
+
+}
+
+/*---------------------------------------------------------------------------*/
+
+AbstractGraphicsItem* RoiMaskGraphicsItem::duplicate()
+{
+
+   RoiMaskGraphicsItem* item = new RoiMaskGraphicsItem(_mask->width(), _mask->height());
+
+   item->setPos(pos());
+   //item->setLine(m_line->line());
+   //item->setLinkColor(m_lineColor);
+   item->calculate();
+   return item;
+
+}
+/*---------------------------------------------------------------------------*/
+
+void RoiMaskGraphicsItem::paint(QPainter* painter,
+                                 const QStyleOptionGraphicsItem* option,
+                                 QWidget* widget )
+{
+
+    Q_UNUSED(option);
+    Q_UNUSED(widget);
+    setPos(0,0);
+    //int hw = (_pixmap->width() / 2) * -1;
+    //int hh = (_pixmap->height() / 2) * -1;
+    if(_display_mask->getValue().toBool())
+    {
+        //painter->drawPixmap(hw, hh, *_pixmap);
+        painter->drawPixmap(0, 0, QPixmap::fromImage(*_mask));
+    }
+
+
+}
+
+/*---------------------------------------------------------------------------*/
+
+void RoiMaskGraphicsItem::mousePressEvent(QGraphicsSceneMouseEvent* event)
+{
+    /*
+    _mouse_down = true;
+   // Mouse click position (in item coordinates)
+
+    int alpha_val = (int)((_alpha_value->getValue().toFloat() / 100.0) * 255.0);
+    QPointF pt = event -> pos();
+    QPoint p(0,0);
+    p.setX(static_cast<int>(pt.x()));
+    p.setY(static_cast<int>(pt.y()));
+    if(_draw_mask->getValue().toBool() == true)
+    {
+        _mask->setPixelColor(p, QColor(0,255,0,alpha_val));
+    }
+    if(_erase_mask->getValue().toBool() == true)
+    {
+        _mask->setPixelColor(p, QColor(0,0,0,0));
+    }
+   // Queue an update
+   update();
+
+   // Pass mouse event
+   QGraphicsItem::mousePressEvent(event);
+   */
+}
+
+/*---------------------------------------------------------------------------*/
+
+void RoiMaskGraphicsItem::mouseMoveEvent(QGraphicsSceneMouseEvent* event)
+{
+    /*
+   if(_mouse_down == true)
+   {
+       int alpha_val = (int)((_alpha_value->getValue().toFloat() / 100.0) * 255.0);
+       QPointF pt = event -> pos();
+       QPoint p(0,0);
+       p.setX(static_cast<int>(pt.x()));
+       p.setY(static_cast<int>(pt.y()));
+       if(_draw_mask->getValue().toBool() == true)
+       {
+           _mask->setPixelColor(p, QColor(0,255,0,alpha_val));
+       }
+       if(_erase_mask->getValue().toBool() == true)
+       {
+           _mask->setPixelColor(p, QColor(0,0,0,0));
+       }
+       // Queue an update
+       update();
+   }
+   */
+}
+
+/*---------------------------------------------------------------------------*/
+
+void RoiMaskGraphicsItem::mouseReleaseEvent(QGraphicsSceneMouseEvent* event)
+{
+    /*
+    _mouse_down = false;
+
+   // Queue an update
+   //update();
+    emit(mask_updated(this, true));
+
+   // Pass mouse event
+   QGraphicsItem::mouseReleaseEvent(event);
+   */
+}
+
+/*---------------------------------------------------------------------------*/
diff --git a/src/gstar/Annotation/RoiMaskGraphicsItem.h b/src/gstar/Annotation/RoiMaskGraphicsItem.h
new file mode 100644
index 0000000..1c5ef3f
--- /dev/null
+++ b/src/gstar/Annotation/RoiMaskGraphicsItem.h
@@ -0,0 +1,133 @@
+/*-----------------------------------------------------------------------------
+ * Copyright (c) 2022, UChicago Argonne, LLC
+ * See LICENSE file.
+ *---------------------------------------------------------------------------*/
+
+#ifndef ROIMASKGI_H
+#define ROIMASKGI_H
+
+/*---------------------------------------------------------------------------*/
+
+#include "LineGraphicsItem.h"
+
+/*---------------------------------------------------------------------------*/
+
+namespace gstar
+{
+
+/**
+ * @brief The RulerGraphicsItem class
+ */
+class RoiMaskGraphicsItem : public AbstractGraphicsItem
+{
+    Q_OBJECT
+
+public:
+
+    /**
+    * @brief RulerGraphicsItem
+    * @param parent
+    */
+   RoiMaskGraphicsItem(int width, int height, AbstractGraphicsItem* parent = 0);
+
+   ~RoiMaskGraphicsItem();
+
+   /**
+    * @brief className
+    * @return
+    */
+   const QString displayName() const;
+
+   /**
+    * @brief duplicate
+    * @return
+    */
+   AbstractGraphicsItem* duplicate();
+
+   /**
+    * @brief boundingRect
+    * @return
+    */
+   QRectF boundingRect() const;
+
+   /**
+    * @brief boundingRectMarker
+    * @return
+    */
+   virtual QRectF boundingRectMarker() const;
+
+   void paint(QPainter* painter, const QStyleOptionGraphicsItem* option, QWidget* widget );
+
+   bool isEnabled() { return _enable_mask->getValue().toBool(); }
+
+   int alphaValue() { return _alpha_value->getValue().toInt(); }
+
+   QImage* image_mask() { return _mask; }
+
+   std::vector<QPoint> get_mask_list();
+
+   QString getName();
+
+signals:
+
+   void mask_updated(RoiMaskGraphicsItem* ano, bool reload);
+
+public slots:
+   /**
+    * @brief updateModel
+    */
+   void updateModel();
+
+   /**
+    * @brief updateView
+    */
+   void updateView();
+
+   /**
+    * @brief calculate
+    */
+   void calculate();
+
+   void drawmask_changed();
+
+   void erasemask_changed();
+
+protected:
+
+   /**
+    * Reimplemented from QGraphicsItem. See Qt documentation.
+    */
+   void mouseMoveEvent(QGraphicsSceneMouseEvent* event);
+
+   /**
+    * Reimplemented from QGraphicsItem. See Qt documentation.
+    */
+   void mousePressEvent(QGraphicsSceneMouseEvent* event);
+
+   /**
+    * Reimplemented from QGraphicsItem. See Qt documentation.
+    */
+   void mouseReleaseEvent(QGraphicsSceneMouseEvent* event);
+
+   AnnotationProperty* _enable_mask;
+
+   AnnotationProperty* _display_mask;
+
+   //AnnotationProperty* _draw_mask;
+
+   //AnnotationProperty* _erase_mask;
+
+   AnnotationProperty* _alpha_value;
+
+   QImage* _mask;
+
+   bool _mouse_down;
+};
+
+}
+
+/*---------------------------------------------------------------------------*/
+
+#endif // RULERGRAPHICSITEM_H
+
+/*---------------------------------------------------------------------------*/
diff --git a/src/gstar/AnnotationProperty.cpp b/src/gstar/AnnotationProperty.cpp
index fcd6d1d..e7e4e7d 100644
--- a/src/gstar/AnnotationProperty.cpp
+++ b/src/gstar/AnnotationProperty.cpp
@@ -66,7 +66,7 @@ void AnnotationProperty::setValue(const QVariant value)
 {
 
    m_value = value;
-   emit valueChanged();
+   emit valueChanged(this, value);
 
 }
 
diff --git a/src/gstar/AnnotationProperty.h b/src/gstar/AnnotationProperty.h
index 8ac91a6..d17f87a 100644
--- a/src/gstar/AnnotationProperty.h
+++ b/src/gstar/AnnotationProperty.h
@@ -73,7 +73,7 @@ class AnnotationProperty : public QObject
    /**
     * @brief valueChanged
     */
-   void valueChanged();
+   void valueChanged(AnnotationProperty*, QVariant);
 
 protected:
 
diff --git a/src/gstar/ImageViewScene.cpp b/src/gstar/ImageViewScene.cpp
index 03901e6..1d0b913 100644
--- a/src/gstar/ImageViewScene.cpp
+++ b/src/gstar/ImageViewScene.cpp
@@ -11,6 +11,8 @@
 #include <QGraphicsView>
 #include <typeinfo>
 
+#include<QDebug>
+
 using namespace gstar;
 
 /*---------------------------------------------------------------------------*/
@@ -25,7 +27,7 @@ ImageViewScene::ImageViewScene(QWidget* parent) : QGraphicsScene(parent)
    m_model = nullptr;
    m_selectionModel = nullptr;
    m_zoomSelection = nullptr;
-
+   _is_multi_scene = false;
    m_unitsLabel = "";
    m_unitsPerPixelX = 1.0;
    m_unitsPerPixelY = 1.0;
@@ -149,7 +151,17 @@ void ImageViewScene::modelRowsInserted(const QModelIndex& parent,
             cItem = item->child(start);
             if (cItem != nullptr)
             {
-               addItem(cItem);
+               //addItem(cItem);
+
+                AbstractGraphicsItem* clone = cItem->duplicate();
+                
+                clone->linkProperties(cItem->properties());
+
+                cItem->linkProperties(clone->properties());
+
+                cItem->appendLinkedDisplayChild(clone);
+
+                addItem(clone);
             }
          }
       }
@@ -159,6 +171,50 @@ void ImageViewScene::modelRowsInserted(const QModelIndex& parent,
 
 /*---------------------------------------------------------------------------*/
 
+void ImageViewScene::modelRowsRemoved(const QModelIndex& parent, int start, int end)
+{
+
+    Q_UNUSED(start);
+    Q_UNUSED(end);
+    if (parent.isValid())
+    {
+        const QAbstractItemModel* pm = parent.model();
+        if (typeid(*pm) == typeid(AnnotationTreeModel))
+        {
+            AbstractGraphicsItem* cItem = nullptr;
+            AbstractGraphicsItem* item =
+                static_cast<AbstractGraphicsItem*>(parent.internalPointer());
+
+            if (item != nullptr)
+            {
+                cItem = item->child(start);
+                if (cItem != nullptr)
+                {
+                    cItem->unlinkAllAnnotations();
+                    QList<QGraphicsItem*> gitems = this->items();
+                    AbstractGraphicsItem* toRemove = nullptr;
+                    for (auto itr : cItem->getLinkedDisplayChildren())
+                    {
+                        if (gitems.contains(itr))
+                        {
+                            removeItem(itr);
+                            toRemove = itr;
+                            break;
+                        }
+                    }
+                    if (toRemove != nullptr)
+                    {
+                        cItem->removeLinkedDisplayChild(toRemove);
+                    }
+                }
+            }
+        }
+    }
+
+}
+
+/*---------------------------------------------------------------------------*/
+
 void ImageViewScene::enableAnnotations(bool state)
 {
 
@@ -392,12 +448,24 @@ QRectF ImageViewScene::pixRect()
 void ImageViewScene::recursiveAddAnnotation(AbstractGraphicsItem* item)
 {
 
-   addItem(item);
-   foreach(AbstractGraphicsItem* cItem, item->childList())
-   {
-      recursiveAddAnnotation(cItem);
-   }
-
+    if (item != nullptr)
+    {
+        if (_is_multi_scene)
+        {
+            AbstractGraphicsItem* clone = item->duplicate();
+            clone->linkProperties(item->properties());
+            item->linkProperties(clone->properties());
+            addItem(clone);
+        }
+        else
+        {
+            addItem(item);
+        }
+        foreach(AbstractGraphicsItem * cItem, item->childList())
+        {
+            recursiveAddAnnotation(cItem);
+        }
+    }
 }
 
 /*---------------------------------------------------------------------------*/
@@ -445,56 +513,58 @@ void ImageViewScene::removeAllGraphicsItems()
 
 void ImageViewScene::sceneSelectionChanged()
 {
-   if (m_model != nullptr && m_selectionModel != nullptr)
-   {
-
-    disconnect(m_selectionModel,
-               SIGNAL(selectionChanged(const QItemSelection &,
-                                       const QItemSelection &)),
-               this,
-               SLOT(modelSelectionChanged(const QItemSelection &,
-                                          const QItemSelection &)));
-
-    disconnect(this,
-               SIGNAL(selectionChanged()),
-               this,
-               SLOT(sceneSelectionChanged()));
-
-   m_selectionModel->clear();
-
-   QList<QGraphicsItem*> sItems = selectedItems();
-   foreach (QGraphicsItem* item, sItems)
-   {
-      AbstractGraphicsItem* tItem = (AbstractGraphicsItem*)item;
-      AbstractGraphicsItem* parent = tItem->parent();
-      if (parent != nullptr)
-      {
-         QModelIndex groupIndex =
-                 m_model->index(parent->row(), 0, QModelIndex());
-         if (groupIndex.isValid())
-         {
-            QModelIndex cIndex = groupIndex.child(tItem->row(), 0);
-            if (cIndex.isValid())
+    if (m_model != nullptr && m_selectionModel != nullptr)
+    {
+
+        disconnect(m_selectionModel,
+            SIGNAL(selectionChanged(const QItemSelection&,
+                const QItemSelection&)),
+            this,
+            SLOT(modelSelectionChanged(const QItemSelection&,
+                const QItemSelection&)));
+
+        disconnect(this,
+            SIGNAL(selectionChanged()),
+            this,
+            SLOT(sceneSelectionChanged()));
+
+        m_selectionModel->clear();
+
+        QList<QGraphicsItem*> sItems = selectedItems();
+        foreach(QGraphicsItem * item, sItems)
+        {
+            AbstractGraphicsItem* tItem = (AbstractGraphicsItem*)item;
+            AbstractGraphicsItem* parent = tItem->parent();
+            if (parent != nullptr)
             {
-               for (int i = 0; i < tItem->columnCount(); i++)
-               {
-               cIndex = groupIndex.child(tItem->row(), i);
-               m_selectionModel->select(cIndex, QItemSelectionModel::Select);
-               }
+                QModelIndex groupIndex =
+                    m_model->index(parent->row(), 0, QModelIndex());
+                if (groupIndex.isValid())
+                {
+                    QModelIndex cIndex = groupIndex.child(tItem->row(), 0);
+                    if (cIndex.isValid())
+                    {
+                        for (int i = 0; i < tItem->columnCount(); i++)
+                        {
+                            cIndex = groupIndex.child(tItem->row(), i);
+                            m_selectionModel->select(cIndex, QItemSelectionModel::Select);
+                        }
+                    }
+                }
             }
-         }
-      }
-   }
-}
-
-connect(m_selectionModel,
-        SIGNAL(selectionChanged(const QItemSelection &,
-                                const QItemSelection &)),
-        this,
-        SLOT(modelSelectionChanged(const QItemSelection &,
-                                   const QItemSelection &)));
-
-connect(this,
+        }
+    }
+
+    if (m_selectionModel != nullptr)
+    {
+        connect(m_selectionModel,
+            SIGNAL(selectionChanged(const QItemSelection&,
+                const QItemSelection&)),
+            this,
+            SLOT(modelSelectionChanged(const QItemSelection&,
+                const QItemSelection&)));
+    }
+    connect(this,
         SIGNAL(selectionChanged()),
         this,
         SLOT(sceneSelectionChanged()));
@@ -545,7 +615,7 @@ void ImageViewScene::setMode(Mode mode)
 
 /*---------------------------------------------------------------------------*/
 
-void ImageViewScene::setModel(QAbstractItemModel* model)
+void ImageViewScene::setModel(QAbstractItemModel* model, bool is_multi_scene)
 {
 
    // Remove old connections
@@ -555,21 +625,33 @@ void ImageViewScene::setModel(QAbstractItemModel* model)
                  SIGNAL(rowsInserted(const QModelIndex&, int, int)),
                  this,
                  SLOT(modelRowsInserted(const QModelIndex&, int, int)));
+
+      disconnect(m_model,
+          SIGNAL(rowsAboutToBeRemoved(const QModelIndex&, int, int)),
+          this,
+          SLOT(modelRowsRemoved(const QModelIndex&, int, int)));
    }
 
    removeAllAnnotationItems();
 
    // Set model
    m_model = model;
+   _is_multi_scene = is_multi_scene;
 
-   addAnnotationsFromModel();
-
-   // Connect signals/slots to inserting and removing ROIs
-   connect(m_model,
+   if (m_model != nullptr)
+   {
+       addAnnotationsFromModel();
+       // Connect signals/slots to inserting and removing ROIs
+       connect(m_model,
            SIGNAL(rowsInserted(const QModelIndex&, int, int)),
            this,
            SLOT(modelRowsInserted(const QModelIndex&, int, int)));
 
+       connect(m_model,
+           SIGNAL(rowsAboutToBeRemoved(const QModelIndex&, int, int)),
+           this,
+           SLOT(modelRowsRemoved(const QModelIndex&, int, int)));
+   }
 }
 
 /*---------------------------------------------------------------------------*/
@@ -591,14 +673,16 @@ void ImageViewScene::setSelectionModel(QItemSelectionModel* selectionModel)
    // Set ROI selection model
    m_selectionModel = selectionModel;
 
-   // Set new connections
-   connect(m_selectionModel,
+   if (m_selectionModel != nullptr)
+   {
+       // Set new connections
+       connect(m_selectionModel,
            SIGNAL(selectionChanged(const QItemSelection&,
-                                   const QItemSelection&)),
+               const QItemSelection&)),
            this,
            SLOT(modelSelectionChanged(const QItemSelection&,
-                                      const QItemSelection&)));
-
+               const QItemSelection&)));
+   }
 }
 
 /*---------------------------------------------------------------------------*/
diff --git a/src/gstar/ImageViewScene.h b/src/gstar/ImageViewScene.h
index adaac4a..2657e54 100644
--- a/src/gstar/ImageViewScene.h
+++ b/src/gstar/ImageViewScene.h
@@ -103,7 +103,7 @@ class ImageViewScene
     *
     * @param model - ROI model
     */
-   void setModel(QAbstractItemModel* model);
+   void setModel(QAbstractItemModel* model, bool is_multi_scene=false);
 
    /**
     * Set the selection model for ROIs
@@ -266,6 +266,8 @@ private slots:
     */
    void modelRowsInserted(const QModelIndex& parent, int start, int end);
 
+   void modelRowsRemoved(const QModelIndex& parent, int start, int end);
+
    /**
     * Internal slot called when the ROI selection in the scene is changed
     * interactively by the user. Reimplemented from QAbstractItemModel.
@@ -333,6 +335,8 @@ private slots:
     */
    double m_unitsPerPixelY;
 
+   bool _is_multi_scene;
+
 };
 
 }
diff --git a/src/gstar/ImageViewWidget.cpp b/src/gstar/ImageViewWidget.cpp
index cd1b500..60b9e35 100644
--- a/src/gstar/ImageViewWidget.cpp
+++ b/src/gstar/ImageViewWidget.cpp
@@ -411,6 +411,99 @@ ImageViewScene* ImageViewWidget::scene(int grid_idx)
 
 /*---------------------------------------------------------------------------*/
 
+void ImageViewWidget::setSceneModel(QAbstractItemModel* model)
+{
+    bool multi_win =  (_sub_windows.size() > 1) ? true : false;
+    for (auto& itr : _sub_windows)
+    {
+        itr.scene->setModel(model, multi_win);
+    }
+}
+
+/*---------------------------------------------------------------------------*/
+
+void ImageViewWidget::setSceneSelectionModel(QItemSelectionModel* selectionModel)
+{
+    for (auto& itr : _sub_windows)
+    {
+        itr.scene->setSelectionModel(selectionModel);
+    }
+}
+
+/*---------------------------------------------------------------------------*/
+
+void ImageViewWidget::setSceneModelAndSelection(QAbstractItemModel* model, QItemSelectionModel* selectionModel)
+{
+    bool multi_win = (_sub_windows.size() > 1) ? true : false;
+    for (auto& itr : _sub_windows)
+    {
+        itr.scene->setModel(model, multi_win);
+        itr.scene->setSelectionModel(selectionModel);
+    }
+}
+
+/*---------------------------------------------------------------------------*/
+
+void ImageViewWidget::sceneEnableAnnotations(bool state)
+{
+    for (auto& itr : _sub_windows)
+    {
+        itr.scene->enableAnnotations(state);
+    }
+}
+
+/*---------------------------------------------------------------------------*/
+
+void ImageViewWidget::setSceneUnitsLabel(QString label)
+{
+    for (auto& itr : _sub_windows)
+    {
+        itr.scene->setUnitsLabel(label);
+    }
+}
+
+/*---------------------------------------------------------------------------*/
+
+void ImageViewWidget::setSceneUnitsPerPixelX(double val)
+{
+    for (auto& itr : _sub_windows)
+    {
+        itr.scene->setUnitsPerPixelX(val);
+    }
+}
+
+/*---------------------------------------------------------------------------*/
+
+void ImageViewWidget::setSceneUnitsPerPixelY(double val)
+{
+    for (auto& itr : _sub_windows)
+    {
+        itr.scene->setUnitsPerPixelY(val);
+    }
+}
+
+/*---------------------------------------------------------------------------*/
+
+void ImageViewWidget::sceneUpdateModel()
+{
+    for (auto& itr : _sub_windows)
+    {
+        itr.scene->updateModel();
+    }
+}
+
+/*---------------------------------------------------------------------------*/
+
+void ImageViewWidget::setScenetPixmap(QPixmap p)
+{
+    for (auto& itr : _sub_windows)
+    {
+        itr.scene->setPixmap(p);
+    }
+}
+
+/*---------------------------------------------------------------------------*/
+
 void ImageViewWidget::sceneRectUpdated(const QRectF& rect)
 {
 
diff --git a/src/gstar/ImageViewWidget.h b/src/gstar/ImageViewWidget.h
index 006a560..593a6dc 100644
--- a/src/gstar/ImageViewWidget.h
+++ b/src/gstar/ImageViewWidget.h
@@ -110,6 +110,24 @@ class ImageViewWidget
     */
    ImageViewScene* scene(int grid_idx = 0);
 
+   void setSceneModel(QAbstractItemModel* model);
+
+   void setSceneSelectionModel(QItemSelectionModel* selectionModel);
+
+   void setSceneModelAndSelection(QAbstractItemModel* model, QItemSelectionModel* selectionModel);
+
+   void sceneEnableAnnotations(bool state);
+
+   void setSceneUnitsLabel(QString label);
+
+   void setSceneUnitsPerPixelX(double val);
+
+   void setSceneUnitsPerPixelY(double val);
+
+   void sceneUpdateModel();
+
+   void setScenetPixmap(QPixmap p);
+
    /**
     * sets the coordinate model for coordinate widget
     */
diff --git a/src/mvc/ExportMapsDialog.cpp b/src/mvc/ExportMapsDialog.cpp
new file mode 100644
index 0000000..bfc1b63
--- /dev/null
+++ b/src/mvc/ExportMapsDialog.cpp
@@ -0,0 +1,134 @@
+/*-----------------------------------------------------------------------------
+ * Copyright (c) 2022, UChicago Argonne, LLC
+ * See LICENSE file.
+ *---------------------------------------------------------------------------*/
+
+#include <mvc/ExportMapsDialog.h>
+#include <QFileDialog>
+#include <QDesktopServices>
+
+/*---------------------------------------------------------------------------*/
+
+ExportMapsDialog::ExportMapsDialog(QDir directory, QWidget *parent) : QWidget(parent)
+{
+    
+    _directory = directory;
+    createLayout();
+    _total_blocks = 100;
+}
+
+/*---------------------------------------------------------------------------*/
+
+ExportMapsDialog::~ExportMapsDialog()
+{
+
+ 
+}
+
+/*---------------------------------------------------------------------------*/
+
+void ExportMapsDialog::createLayout()
+{
+
+    _progressBarFiles = new QProgressBar();
+    _progressBarFiles->setRange(0, 100);
+
+    _btn_run = new QPushButton("Export");
+    connect(_btn_run, &QPushButton::released, this, &ExportMapsDialog::export_released);
+    _btn_cancel = new QPushButton("Close");
+    connect(_btn_cancel, &QPushButton::released, this, &ExportMapsDialog::close);
+
+    _processing_grp = new QGroupBox();
+    QVBoxLayout* v_proc_layout = new QVBoxLayout();
+    QHBoxLayout* h_layout = new QHBoxLayout();
+    _le_dir = new QLabel();
+    _le_dir->setText(_directory.absolutePath());
+    QPushButton *btn_browse = new QPushButton("Browse");
+    connect(btn_browse, &QPushButton::released, this, &ExportMapsDialog::on_browse);
+    QPushButton *btn_open = new QPushButton("Open");
+    connect(btn_open, &QPushButton::released, this, &ExportMapsDialog::on_open);
+    h_layout->addWidget(_le_dir);
+    h_layout->addWidget(btn_browse);
+    h_layout->addWidget(btn_open);
+    _export_tiff = new QCheckBox("Save Tiff");
+    _export_tiff->setChecked(true);
+
+    _export_png = new QCheckBox("Save PNG");
+    _export_png->setChecked(true);
+
+    _export_ascii = new QCheckBox("Save ASCII");
+    _export_ascii->setChecked(true);
+
+    _export_all = new QCheckBox("Exports all elements: Unchecked exports only elements in view");
+    _export_all->setChecked(false);
+
+    _save_screen = new QCheckBox("Screenshot elements in view");
+    _save_screen->setChecked(false);
+
+    v_proc_layout->addItem(h_layout);
+    //v_proc_layout->addWidget(_export_tiff);
+    v_proc_layout->addWidget(_export_png);
+    v_proc_layout->addWidget(_export_ascii);
+    v_proc_layout->addWidget(_export_all);
+    v_proc_layout->addWidget(_save_screen);
+
+    _processing_grp->setLayout(v_proc_layout);
+    _processing_grp->setTitle("Export Image Options");
+
+    QHBoxLayout* buttonlayout = new QHBoxLayout();
+    buttonlayout->addWidget(_btn_run);
+    buttonlayout->addWidget(_btn_cancel);
+
+    QHBoxLayout* proc_save_layout = new QHBoxLayout();
+    proc_save_layout->addWidget(_processing_grp);
+    
+    QVBoxLayout* layout = new QVBoxLayout();
+    layout->addItem(proc_save_layout);
+    layout->addItem(buttonlayout);
+    layout->addWidget(_progressBarFiles);
+    
+    setLayout(layout);
+}
+
+/*---------------------------------------------------------------------------*/
+
+void ExportMapsDialog::setRunEnabled(bool val)
+{
+    _processing_grp->setEnabled(val);
+    _btn_run->setEnabled(val); 
+}
+
+/*---------------------------------------------------------------------------*/
+
+void ExportMapsDialog::on_browse()
+{
+    _directory = QFileDialog::getExistingDirectory(this, "Export Directory", _directory.absolutePath());
+}
+
+/*---------------------------------------------------------------------------*/
+
+void ExportMapsDialog::on_open()
+{
+    if (false == QDesktopServices::openUrl(QUrl::fromLocalFile(_directory.absolutePath())))
+    {
+        logE << "Failed to open dir " << _directory.absolutePath().toStdString() << "\n";
+    }
+}
+
+/*---------------------------------------------------------------------------*/
+
+void ExportMapsDialog::status_callback(size_t cur_block, size_t total_blocks)
+{
+    
+    if (_total_blocks != total_blocks)
+    {
+        _total_blocks = total_blocks;
+        _progressBarFiles->setRange(0, _total_blocks);
+    }
+
+    _progressBarFiles->setValue(cur_block);
+    
+    QCoreApplication::processEvents();
+}
+
+/*---------------------------------------------------------------------------*/
\ No newline at end of file
diff --git a/src/mvc/ExportMapsDialog.h b/src/mvc/ExportMapsDialog.h
new file mode 100644
index 0000000..b0b7f75
--- /dev/null
+++ b/src/mvc/ExportMapsDialog.h
@@ -0,0 +1,116 @@
+/*-----------------------------------------------------------------------------
+ * Copyright (c) 2022, UChicago Argonne, LLC
+ * See LICENSE file.
+ *---------------------------------------------------------------------------*/
+
+#ifndef EXPORT_MAPS_DIALOG_H
+#define EXPORT_MAPS_DIALOG_H
+
+/*---------------------------------------------------------------------------*/
+
+#include <QWidget>
+#include <QTextEdit>
+#include <QDir>
+#include <QProgressBar>
+#include <QPushButton>
+#include <QLineEdit>
+#include <QVBoxLayout>
+#include <QHBoxLayout>
+#include <QLabel>
+#include <QListWidgetItem>
+#include <QStringListModel>
+#include <QStandardItemModel>
+#include <QCheckBox>
+#include <QEventLoop>
+#include <QLineEdit>
+#include <QApplication>
+#include <QGroupBox>
+#include <QScrollArea>
+#include <QMessageBox>
+#include "core/defines.h"
+
+/*---------------------------------------------------------------------------*/
+
+
+class ExportMapsDialog : public QWidget
+{
+
+   Q_OBJECT
+
+public:
+
+   /**
+    * Constructor.
+    */
+	ExportMapsDialog(QDir directory, QWidget *parent = nullptr);
+
+   /**
+    * Destructor.
+    */
+   ~ExportMapsDialog();
+
+    void status_callback(size_t cur, size_t total);
+
+    void setRunEnabled(bool val);
+
+    bool get_save_tiff() { return _export_tiff->isChecked(); }
+
+    bool get_save_png() { return _export_png->isChecked(); }
+
+    bool get_save_ascii() { return _export_ascii->isChecked(); }
+
+    bool get_export_all() { return _export_all->isChecked(); }
+
+    bool get_save_screen() { return _save_screen->isChecked(); }
+
+    QDir get_dir() { return _directory; }
+
+signals:
+
+    void export_released();
+
+public slots:
+
+    void on_browse();
+
+    void on_open();
+
+protected:
+
+   /**
+    * @brief Create layout
+    */
+   void createLayout();
+
+   QDir _directory;
+
+   QGroupBox* _processing_grp;
+
+   QProgressBar *_progressBarFiles;
+
+   QPushButton *_btn_run;
+
+   QPushButton *_btn_cancel;
+
+   QCheckBox* _export_tiff;
+
+   QCheckBox* _export_png;
+
+   QCheckBox* _export_ascii;
+
+   QCheckBox* _export_all;
+
+   QCheckBox* _save_screen;
+
+   QLabel* _le_dir;
+   
+   size_t _total_blocks;
+
+};
+
+
+/*---------------------------------------------------------------------------*/
+
+#endif 
+
+/*---------------------------------------------------------------------------*/
diff --git a/src/mvc/FileTabWidget.cpp b/src/mvc/FileTabWidget.cpp
index 650de28..3088e6e 100644
--- a/src/mvc/FileTabWidget.cpp
+++ b/src/mvc/FileTabWidget.cpp
@@ -21,12 +21,12 @@ FileTabWidget::FileTabWidget(QWidget* parent) : QWidget(parent)
     _filterHelpMenu = new QMenu("Help", this);
 
     _contextMenu = new QMenu(("Context menu"), this);
-    QAction* action = _contextMenu->addAction("Load");
-    connect(action, SIGNAL(triggered()), this, SLOT(onLoadFile()));
-    action = _contextMenu->addAction("UnLoad");
-    connect(action, SIGNAL(triggered()), this, SLOT(onUnloadFile()));
-    action = _contextMenu->addAction("Refresh");
-    connect(action, SIGNAL(triggered()), this, SIGNAL(onRefresh()));
+    _action_load = _contextMenu->addAction("Load");
+    connect(_action_load, SIGNAL(triggered()), this, SLOT(onLoadFile()));
+    _action_unload = _contextMenu->addAction("UnLoad");
+    connect(_action_unload, SIGNAL(triggered()), this, SLOT(onUnloadFile()));
+    _action_refresh = _contextMenu->addAction("Refresh");
+    connect(_action_refresh, SIGNAL(triggered()), this, SIGNAL(onRefresh()));
 
     _file_list_model = new QStandardItemModel();
     _file_list_view = new QListView();
@@ -97,18 +97,42 @@ void FileTabWidget::_gen_visible_list(QStringList *sl)
 
 void FileTabWidget::load_all_visible()
 {
+    _load_all_btn->setEnabled(false);
+    _unload_all_btn->setEnabled(false);
+    _action_load->setEnabled(false);
+    _action_unload->setEnabled(false);
+    _action_refresh->setEnabled(false);
+
     QStringList sl;
     _gen_visible_list(&sl);
     emit loadList(sl);
+
+    _action_load->setEnabled(true);
+    _action_unload->setEnabled(true);
+    _action_refresh->setEnabled(true);
+    _load_all_btn->setEnabled(true);
+    _unload_all_btn->setEnabled(true);
 }
 
 /*---------------------------------------------------------------------------*/
 
 void FileTabWidget::unload_all_visible()
 {
+    _load_all_btn->setEnabled(false);
+    _unload_all_btn->setEnabled(false);
+    _action_load->setEnabled(false);
+    _action_unload->setEnabled(false);
+    _action_refresh->setEnabled(false);
+
     QStringList sl;
     _gen_visible_list(&sl);
     emit unloadList(sl);
+
+    _action_load->setEnabled(true);
+    _action_unload->setEnabled(true);
+    _action_refresh->setEnabled(true);
+    _load_all_btn->setEnabled(true);
+    _unload_all_btn->setEnabled(true);
 }
 
 /*---------------------------------------------------------------------------*/
@@ -183,6 +207,12 @@ void FileTabWidget::onDoubleClickElement(const QModelIndex idx)
 
 void FileTabWidget::onLoadFile()
 {
+    _load_all_btn->setEnabled(false);
+    _unload_all_btn->setEnabled(false);
+    _action_load->setEnabled(false);
+    _action_unload->setEnabled(false);
+    _action_refresh->setEnabled(false);
+
     QStringList sl;
     QModelIndexList list = _file_list_view->selectionModel()->selectedIndexes();
     for(int i =0; i<list.length(); i++)
@@ -191,12 +221,24 @@ void FileTabWidget::onLoadFile()
         sl.append(idx.data(0).toString());
     }
     emit loadList(sl);
+
+    _action_load->setEnabled(true);
+    _action_unload->setEnabled(true);
+    _action_refresh->setEnabled(true);
+    _load_all_btn->setEnabled(true);
+    _unload_all_btn->setEnabled(true);
 }
 
 /*---------------------------------------------------------------------------*/
 
 void FileTabWidget::onUnloadFile()
 {
+    _load_all_btn->setEnabled(false);
+    _unload_all_btn->setEnabled(false);
+    _action_load->setEnabled(false);
+    _action_unload->setEnabled(false);
+    _action_refresh->setEnabled(false);
+
     QStringList sl;
     QModelIndexList list = _file_list_view->selectionModel()->selectedIndexes();
     for(int i =0; i<list.length(); i++)
@@ -205,6 +247,12 @@ void FileTabWidget::onUnloadFile()
         sl.append(idx.data(0).toString());
     }
     emit unloadList(sl);
+
+    _action_load->setEnabled(true);
+    _action_unload->setEnabled(true);
+    _action_refresh->setEnabled(true);
+    _load_all_btn->setEnabled(true);
+    _unload_all_btn->setEnabled(true);
 }
 
 /*---------------------------------------------------------------------------*/
diff --git a/src/mvc/FileTabWidget.h b/src/mvc/FileTabWidget.h
index 24db08a..e9313e3 100644
--- a/src/mvc/FileTabWidget.h
+++ b/src/mvc/FileTabWidget.h
@@ -108,6 +108,13 @@ public slots:
     QPushButton* _process_btn;
 
 	QPushButton * _filter_suggest_btn;
+
+    QAction* _action_load;
+
+    QAction* _action_unload;
+
+    QAction* _action_refresh;
+
 };
 
 /*---------------------------------------------------------------------------*/
diff --git a/src/mvc/FitSpectraWidget.cpp b/src/mvc/FitSpectraWidget.cpp
index 9e3adf0..4118782 100644
--- a/src/mvc/FitSpectraWidget.cpp
+++ b/src/mvc/FitSpectraWidget.cpp
@@ -18,6 +18,7 @@
 
 #include "data_struct/element_info.h"
 #include "fitting//optimizers/lmfit_optimizer.h"
+#include <mvc/NumericPrecDelegate.h>
 #include <preferences/Preferences.h>
 
 using namespace data_struct;
@@ -40,6 +41,7 @@ FitSpectraWidget::FitSpectraWidget(QWidget* parent) : QWidget(parent)
     _fit_spec.setZero(2048);
     _showDetailedFitSpec = Preferences::inst()->getValue(STR_PFR_DETAILED_FIT_SPEC).toBool();
 	_showFitIntSpec = Preferences::inst()->getValue(STR_PFR_SHOW_FIT_INT_SPEC).toBool();
+    _showMaxChanSpec = Preferences::inst()->getValue(STR_PFR_SHOW_MAX_CHAN_SPEC).toBool();
     for(const std::string& e : data_struct::Element_Symbols)
     {
         _cb_add_elements->addItem(QString::fromStdString(e));
@@ -112,11 +114,17 @@ void FitSpectraWidget::createLayout()
     _fit_params_table_model->setFitParams(g_model.fit_parameters());
     connect(_fit_params_table_model, &FitParamsTableModel::onEnergyChange, this, &FitSpectraWidget::replot_integrated_spectra_with_background);
     ComboBoxDelegate *cbDelegate = new ComboBoxDelegate(bound_types);
+    NumericPrecDelegate* npDelegate = new NumericPrecDelegate();
+
 
     _fit_params_table = new QTableView();
     _fit_params_table->setModel(_fit_params_table_model);
     _fit_params_table->sortByColumn(0, Qt::AscendingOrder);
+    _fit_params_table->setItemDelegateForColumn(1, npDelegate);
     _fit_params_table->setItemDelegateForColumn(2, cbDelegate);
+    _fit_params_table->setItemDelegateForColumn(3, npDelegate);
+    _fit_params_table->setItemDelegateForColumn(4, npDelegate);
+    _fit_params_table->setItemDelegateForColumn(5, npDelegate);
     _fit_params_table->horizontalHeader()->setSectionResizeMode(QHeaderView::Stretch);
     _fit_params_table->setContextMenuPolicy(Qt::CustomContextMenu);
     connect(_fit_params_table,
@@ -131,6 +139,7 @@ void FitSpectraWidget::createLayout()
 
     _fit_elements_table = new QTreeView();
     _fit_elements_table->setModel(_fit_elements_table_model);
+    _fit_elements_table->setItemDelegateForColumn(1, npDelegate);
     _fit_elements_table->sortByColumn(0);
     //_fit_elements_table->horizontalHeader()->setSectionResizeMode(QHeaderView::Stretch);
 
@@ -298,6 +307,22 @@ void FitSpectraWidget::onSettingsDialog()
 				_spectra_widget->remove_spectra(name);
 			}
 		}
+
+        _showMaxChanSpec = Preferences::inst()->getValue(STR_PFR_SHOW_MAX_CHAN_SPEC).toBool();
+        if(_showMaxChanSpec)
+        {
+            for (auto& itr : _max_chan_spec_map)
+            {
+                _spectra_widget->append_spectra(QString(itr.first.c_str()), itr.second, (data_struct::Spectra<double>*) & _ev);
+            }
+        }
+        else
+        {
+            for (auto& itr : _max_chan_spec_map)
+            {
+                _spectra_widget->remove_spectra(QString(itr.first.c_str()));
+            }
+        }
     }
 }
 
@@ -367,6 +392,15 @@ void FitSpectraWidget::replot_integrated_spectra(bool snipback)
 			}
 		}
 		
+        _showMaxChanSpec = Preferences::inst()->getValue(STR_PFR_SHOW_MAX_CHAN_SPEC).toBool();
+        if (_showMaxChanSpec)
+        {
+            for (auto& itr : _max_chan_spec_map)
+            {
+                _spectra_widget->append_spectra(QString(itr.first.c_str()), itr.second, (data_struct::Spectra<double>*) & _ev);
+            }
+        }
+
         for (auto& itr : _roi_spec_map)
         {
             _spectra_widget->append_spectra(QString(itr.first.c_str()), itr.second, (data_struct::Spectra<double>*) & _ev);
@@ -384,6 +418,13 @@ void FitSpectraWidget::appendFitIntSpectra(string name, ArrayDr* spec)
 
 /*---------------------------------------------------------------------------*/
 
+void FitSpectraWidget::appendMaxChanSpectra(string name, ArrayDr* spec)
+{
+    _max_chan_spec_map[name] = spec;
+}
+
+/*---------------------------------------------------------------------------*/
+
 void FitSpectraWidget::appendROISpectra(string name, ArrayDr* spec)
 {
     _roi_spec_map[name] = spec;
@@ -400,6 +441,18 @@ void FitSpectraWidget::clearFitIntSpectra()
     }
     _fit_int_spec_map.clear();
 
+}
+
+/*---------------------------------------------------------------------------*/
+
+void FitSpectraWidget::clearMaxChanSpectra()
+{
+    for (auto& itr : _max_chan_spec_map)
+    {
+        _spectra_widget->remove_spectra(QString(itr.first.c_str()));
+    }
+    _max_chan_spec_map.clear();
+
 }
 /*---------------------------------------------------------------------------*/
 
diff --git a/src/mvc/FitSpectraWidget.h b/src/mvc/FitSpectraWidget.h
index a2ef32a..e2b395a 100644
--- a/src/mvc/FitSpectraWidget.h
+++ b/src/mvc/FitSpectraWidget.h
@@ -64,9 +64,13 @@ class FitSpectraWidget : public QWidget
 
    void appendFitIntSpectra(string, ArrayDr*);
 
+   void appendMaxChanSpectra(string name, ArrayDr* spec);
+
    void appendROISpectra(string, ArrayDr*);
 
    void clearFitIntSpectra();
+   
+   void clearMaxChanSpectra();
 
    void clearROISpectra();
 
@@ -187,6 +191,8 @@ private slots:
 
     unordered_map<string, ArrayDr*> _fit_int_spec_map;
 
+    unordered_map<string, ArrayDr*> _max_chan_spec_map;
+
     unordered_map<string, ArrayDr*> _roi_spec_map;
 
     std::string _detector_element;
@@ -211,6 +217,8 @@ private slots:
 
 	bool _showFitIntSpec;
 
+    bool _showMaxChanSpec;
+
     unordered_map<string, ArrayDr> _labeled_spectras;
 };
 
diff --git a/src/mvc/MapsElementsWidget.cpp b/src/mvc/MapsElementsWidget.cpp
index 6aec5a7..6cb5718 100644
--- a/src/mvc/MapsElementsWidget.cpp
+++ b/src/mvc/MapsElementsWidget.cpp
@@ -7,7 +7,7 @@
 
 #include <gstar/ImageViewWidget.h>
 
-#include <gstar/Annotation/HotSpotMaskGraphicsItem.h>
+#include <gstar/Annotation/RoiMaskGraphicsItem.h>
 
 #include <QVBoxLayout>
 #include <QHBoxLayout>
@@ -19,7 +19,7 @@
 #include <limits>
 #include "core/GlobalThreadPool.h"
 #include "io/file/csv_io.h"
-
+#include "core/ColorMap.h"
 
 using gstar::AbstractImageWidget;
 using gstar::ImageViewWidget;
@@ -36,6 +36,8 @@ MapsElementsWidget::MapsElementsWidget(int rows, int cols, bool create_image_nav
     _calib_curve = nullptr;
 	_min_contrast_perc = 0;
 	_max_contrast_perc = 1.0;
+    
+    _export_maps_dialog = nullptr;
 
 	int r = 0;
     for (int i = 0; i < 256; ++i)
@@ -120,6 +122,13 @@ void MapsElementsWidget::_createLayout(bool create_image_nav)
 	_cb_colormap = new QComboBox();
 	_cb_colormap->addItem(STR_COLORMAP_GRAY);
 	_cb_colormap->addItem(STR_COLORMAP_HEAT);
+
+    const std::map<QString, QVector<QRgb> >* color_maps = ColorMap::inst()->color_maps();
+    for (auto itr : *color_maps)
+    {
+        _cb_colormap->addItem(itr.first);
+    }
+
     connect(_cb_colormap, SIGNAL(currentIndexChanged(QString)), this, SLOT(onColormapSelect(QString)));
 
     m_toolbar->addWidget(new QLabel(" ColorMap :"));
@@ -155,6 +164,10 @@ void MapsElementsWidget::_createLayout(bool create_image_nav)
     connect(_contrast_widget, &gstar::MinMaxSlider::min_max_val_changed, this, &MapsElementsWidget::on_min_max_contrast_changed);
     m_toolbar->addWidget(_contrast_widget);
 
+    _btn_export_as_image = new QPushButton("Export Images");
+    connect(_btn_export_as_image, &QPushButton::pressed, this, &MapsElementsWidget::on_export_image_pressed);
+    m_toolbar->addWidget(_btn_export_as_image);
+
     //_pb_perpixel_fitting = new QPushButton("Per Pixel Fitting");
     //counts_layout->addWidget(_pb_perpixel_fitting);
 
@@ -163,10 +176,10 @@ void MapsElementsWidget::_createLayout(bool create_image_nav)
     _extra_pvs_table_widget = new QTableWidget(1, 4);
     _extra_pvs_table_widget->setHorizontalHeaderLabels(extra_pv_header);
 
-    QWidget *window = new QWidget();
-    window->setLayout(counts_layout);
+    _counts_window = new QWidget();
+    _counts_window->setLayout(counts_layout);
 
-    _tab_widget->addTab(window, "Analyzed Counts");
+    _tab_widget->addTab(_counts_window, "Analyzed Counts");
     _tab_widget->addTab(_spectra_widget, DEF_STR_INT_SPECTRA);
     _tab_widget->addTab(_extra_pvs_table_widget, "Extra PV's");
 
@@ -253,6 +266,7 @@ void MapsElementsWidget::on_min_max_contrast_changed()
 void MapsElementsWidget::onNewGridLayout(int rows, int cols)
 {
     const std::vector<QString> element_view_list = m_imageViewWidget->getLabelList();
+    m_imageViewWidget->setSceneModelAndSelection(nullptr, nullptr);
     m_imageViewWidget->newGridLayout(rows, cols);
     model_updated();
     m_imageViewWidget->restoreLabels(element_view_list);
@@ -264,24 +278,24 @@ void MapsElementsWidget::onNewGridLayout(int rows, int cols)
 
 /*---------------------------------------------------------------------------*/
 
-void MapsElementsWidget::addHotSpotMask()
+void MapsElementsWidget::addRoiMask()
 {
     int w = m_imageViewWidget->scene()->getPixmapItem()->pixmap().width();
     int h = m_imageViewWidget->scene()->getPixmapItem()->pixmap().height();
-   gstar::HotSpotMaskGraphicsItem* annotation = new gstar::HotSpotMaskGraphicsItem(w, h);
+   gstar::RoiMaskGraphicsItem* annotation = new gstar::RoiMaskGraphicsItem(w, h);
    insertAndSelectAnnotation(m_treeModel, m_annoTreeView, m_selectionModel, annotation);
 
    //QString name = ano->getName();
    //_spectra_widget->appendROISpectra()
    //            //data_struct Spectra = _model->load_roi(annotation->getROI());
 
-   connect(annotation, &gstar::HotSpotMaskGraphicsItem::mask_updated, this, &MapsElementsWidget::roiUpdated);
+   connect(annotation, &gstar::RoiMaskGraphicsItem::mask_updated, this, &MapsElementsWidget::roiUpdated);
 
 }
 
 /*---------------------------------------------------------------------------*/
 
-void MapsElementsWidget::roiUpdated(gstar::HotSpotMaskGraphicsItem* ano, bool reload)
+void MapsElementsWidget::roiUpdated(gstar::RoiMaskGraphicsItem* ano, bool reload)
 {
     if (ano != nullptr && reload)
     {
@@ -297,14 +311,14 @@ void MapsElementsWidget::roiUpdated(gstar::HotSpotMaskGraphicsItem* ano, bool re
 void MapsElementsWidget::createActions()
 {
     AbstractImageWidget::createActions();
-    // TODO: change hotspot to spectra region and add back in
+    // TODO: change Roi to spectra region and add back in
     
-    _addHotSpotMaskAction = new QAction("Add ROI Mask", this);
+    _addRoiMaskAction = new QAction("Add ROI Mask", this);
 
-    connect(_addHotSpotMaskAction,
+    connect(_addRoiMaskAction,
             SIGNAL(triggered()),
             this,
-            SLOT(addHotSpotMask()));
+            SLOT(addRoiMask()));
             
 }
 
@@ -320,7 +334,7 @@ void MapsElementsWidget::displayContextMenu(QWidget* parent,
    QMenu menu(parent);
    menu.addAction(m_addMarkerAction);
    menu.addAction(m_addRulerAction);
-   menu.addAction(_addHotSpotMaskAction);
+   menu.addAction(_addRoiMaskAction);
 
    if (m_treeModel != nullptr && m_treeModel->rowCount() > 0)
    {
@@ -396,6 +410,19 @@ void MapsElementsWidget::onColormapSelect(QString colormap)
 		_selected_colormap = &_heat_colormap;
         Preferences::inst()->setValue(STR_COLORMAP, STR_COLORMAP_HEAT);
 	}
+    else
+    {
+        _selected_colormap = ColorMap::inst()->get_color_map(colormap);
+        if (_selected_colormap == nullptr)
+        {
+            _selected_colormap = &_gray_colormap;
+            Preferences::inst()->setValue(STR_COLORMAP, STR_COLORMAP_GRAY);
+        }
+        else
+        {
+            Preferences::inst()->setValue(STR_COLORMAP, colormap);
+        }
+    }
 	redrawCounts();
     
     Preferences::inst()->save();
@@ -464,6 +491,12 @@ void MapsElementsWidget::setModel(MapsH5Model* model)
                 _spectra_widget->appendFitIntSpectra(itr.first, itr.second);
             }
 
+            for (auto& itr : model->_max_chan_spec_dict)
+            {
+                _spectra_widget->appendMaxChanSpectra(itr.first, itr.second);
+            }
+            
+
 			_model->getIntegratedSpectra(_int_spec);
 			_spectra_widget->setIntegratedSpectra(&_int_spec);
             connect(_model, &MapsH5Model::model_int_spec_updated, _spectra_widget, &FitSpectraWidget::replot_integrated_spectra);
@@ -821,7 +854,9 @@ void MapsElementsWidget::redrawCounts()
             }
         }
     }
-
+    //redraw annotations
+    m_selectionModel->clear();
+    m_imageViewWidget->setSceneModelAndSelection(m_treeModel, m_selectionModel);
 }
 
 /*---------------------------------------------------------------------------*/
@@ -829,20 +864,20 @@ void MapsElementsWidget::redrawCounts()
 void MapsElementsWidget::_get_min_max_vals(float &min_val, float &max_val, const Eigen::Array<double, Eigen::Dynamic, Eigen::Dynamic, Eigen::RowMajor>& element_counts)
 {
     
-    gstar::HotSpotMaskGraphicsItem item(0,0);
+    gstar::RoiMaskGraphicsItem item(0,0);
 
-    QList<gstar::AbstractGraphicsItem*>  hotspots;
+    QList<gstar::AbstractGraphicsItem*>  Rois;
     if(m_treeModel != nullptr)
     {
-        hotspots = m_treeModel->get_all_of_type( item.classId() );
+        Rois = m_treeModel->get_all_of_type( item.classId() );
     }
     
     QImage *sum_of_masks = nullptr;
-    if(hotspots.size() > 0)
+    if(Rois.size() > 0)
     {
-        foreach(gstar::AbstractGraphicsItem* item , hotspots)
+        foreach(gstar::AbstractGraphicsItem* item , Rois)
         {
-            gstar::HotSpotMaskGraphicsItem* mask = dynamic_cast<gstar::HotSpotMaskGraphicsItem*>(item);
+            gstar::RoiMaskGraphicsItem* mask = dynamic_cast<gstar::RoiMaskGraphicsItem*>(item);
             if(mask->isEnabled())
             {
                 if(sum_of_masks == nullptr)
@@ -1133,3 +1168,253 @@ void MapsElementsWidget::windowChanged(Qt::WindowStates oldState,
 }
 
 /*---------------------------------------------------------------------------*/
+
+void MapsElementsWidget::on_export_image_pressed()
+{
+
+    //bring up dialog 
+    if (_export_maps_dialog == nullptr)
+    {
+        QDir export_model_dir = _model->getDir();
+        export_model_dir.cdUp();
+        export_model_dir.mkdir("export");
+        export_model_dir.cd("export");
+        export_model_dir.mkdir(_model->getDatasetName());
+        export_model_dir.cd(_model->getDatasetName());
+
+        _export_maps_dialog = new ExportMapsDialog(export_model_dir.absolutePath());
+        connect(_export_maps_dialog, &ExportMapsDialog::export_released, this, &MapsElementsWidget::on_export_images);
+    }
+    _export_maps_dialog->show();
+
+}
+
+/*---------------------------------------------------------------------------*/
+
+void MapsElementsWidget::on_export_images()
+{
+    _export_maps_dialog->setRunEnabled(false);
+    
+    //get all maps
+    int view_cnt = m_imageViewWidget->getViewCount();
+    std::string analysis_text = _cb_analysis->currentText().toStdString();
+    std::map<std::string, std::future<QPixmap> > job_queue;
+
+
+    QDir export_model_dir = _export_maps_dialog->get_dir();
+    int cur = 0;
+
+    if (_export_maps_dialog->get_save_tiff())
+    {
+        
+    }
+    if (_export_maps_dialog->get_save_png())
+    {
+        if (_export_maps_dialog->get_export_all())
+        {
+            std::vector<std::string> normalizers = { STR_DS_IC , STR_US_IC, STR_SR_CURRENT, "Counts" };
+
+            std::vector<std::string> analysis_types = _model->getAnalyzedTypes();
+            for (auto& a_itr : analysis_types)
+            {
+                data_struct::Fit_Count_Dict<float> element_counts;
+                _model->getAnalyzedCounts(a_itr, element_counts);
+
+                for (auto& e_itr : element_counts)
+                {
+                    std::string save_file_name = a_itr + "-" + e_itr.first + ".png";
+                    QPixmap pixmap = generate_pixmap(a_itr, e_itr.first, false, -1);
+                    if (false == pixmap.save(QDir::cleanPath(export_model_dir.absolutePath() + QDir::separator() + QString(save_file_name.c_str())), "PNG"))
+                    {
+                        logE << "Could not save PNG for " << QDir::cleanPath(export_model_dir.absolutePath() + QDir::separator() + QString(save_file_name.c_str()) + ".png").toStdString() << "\n";
+                    }
+                }
+            }
+        }
+        else
+        {
+            _export_maps_dialog->status_callback(cur, view_cnt);
+            for (int vidx = 0; vidx < view_cnt; vidx++)
+            {
+                QString element = m_imageViewWidget->getLabelAt(vidx);
+
+                job_queue[element.toStdString()] = Global_Thread_Pool::inst()->enqueue([this, vidx, analysis_text, element] { return generate_pixmap(analysis_text, element.toStdString(), _chk_log_color->isChecked(), vidx); });
+            }
+
+            while (job_queue.size() > 0)
+            {
+                std::vector<std::string> to_delete;
+                for (auto& itr : job_queue)
+                {
+                    if (false == itr.second.get().save(QDir::cleanPath(export_model_dir.absolutePath() + QDir::separator() + QString(itr.first.c_str()) + ".png"), "PNG"))
+                    {
+                        logE << "Could not save PNG for " << QDir::cleanPath(export_model_dir.absolutePath() + QDir::separator() + QString(itr.first.c_str()) + ".png").toStdString() << "\n";
+                    }
+                    to_delete.push_back(itr.first);
+                    cur++;
+                    _export_maps_dialog->status_callback(cur, view_cnt);
+                }
+
+                for (const auto& itr : to_delete)
+                {
+                    job_queue.erase(itr);
+                }
+            }
+        }
+    }
+    if (_export_maps_dialog->get_save_ascii())
+    {
+        std::vector<std::string> normalizers = { STR_DS_IC , STR_US_IC, STR_SR_CURRENT, "Counts" };
+
+        const std::vector<float> x_axis = _model->get_x_axis();
+        const std::vector<float> y_axis = _model->get_y_axis();
+
+        std::string save_file_name = export_model_dir.absolutePath().toStdString() + QDir::separator().toLatin1() + _model->getDatasetName().toStdString();
+        std::vector<std::string> analysis_types = _model->getAnalyzedTypes();
+
+        size_t cur = 0;
+        size_t total = analysis_types.size() * x_axis.size() * y_axis.size() * normalizers.size();
+        _export_maps_dialog->status_callback(cur, total);
+
+
+        for (auto& a_itr : analysis_types)
+        {
+            data_struct::Fit_Count_Dict<float> element_counts;
+            _model->getAnalyzedCounts(a_itr, element_counts);
+
+            data_struct::ArrayXXr<float>* normalizer = nullptr;
+
+            for (auto n_itr : normalizers)
+            {
+                std::unordered_map<std::string, data_struct::ArrayXXr<float>>* scalers = _model->getScalers();
+                if (scalers->count(n_itr) > 0)
+                {
+                    normalizer = &(scalers->at(n_itr));
+                }
+                Calibration_curve<double>* calib_curve = _model->get_calibration_curve(a_itr, n_itr);
+
+                std::string sub_save_file = save_file_name + "-" + a_itr + "-" + n_itr + ".csv";
+                std::ofstream out_stream(sub_save_file);
+
+                logI << save_file_name << "\n";
+
+                if (out_stream.is_open())
+                {
+
+                    out_stream << "ascii information for file: " << _model->getDatasetName().toStdString() << "\n";
+
+
+
+                    if (a_itr == STR_FIT_ROI || n_itr == "Counts")
+                    {
+                        out_stream << "Analysis " << a_itr << " in cts/s \n";
+                    }
+                    else
+                    {
+                        out_stream << "Analysis " << a_itr << " Normalized by " << n_itr << " ug/cm2 \n";
+                    }
+
+                    out_stream << "Y Pixel, X Pixel, Y Position, X Position, ";
+                    for (auto& e_itr : element_counts)
+                    {
+                        out_stream << e_itr.first;
+                        if (calib_curve != nullptr && normalizer != nullptr)
+                        {
+                            if (calib_curve->calib_curve.count(e_itr.first) > 0)
+                            {
+                                out_stream << " (ug/cm2) ";
+                            }
+                            else
+                            {
+                                out_stream << " (cts/s) ";
+                            }
+                        }
+                        else
+                        {
+                            out_stream << " (cts/s) ";
+                        }
+                        out_stream << " , ";
+                    }
+                    out_stream << "\n";
+
+                    for (int yidx = 0; yidx < y_axis.size(); yidx++)
+                    {
+                        for (int xidx = 0; xidx < x_axis.size(); xidx++)
+                        {
+
+                            out_stream << yidx << " , " << xidx << " , " << y_axis.at(yidx) << " , " << x_axis.at(xidx) << " , ";
+
+                            for (auto& e_itr : element_counts)
+                            {
+                                float calib_val = 1.0;
+                                double val = 1.0;
+                                float e_val = (e_itr.second)(yidx, xidx);
+                                if (a_itr == STR_FIT_ROI || n_itr == "Counts")
+                                {
+                                    val = e_val;
+                                }
+                                else
+                                {
+                                    if (calib_curve != nullptr && normalizer != nullptr)
+                                    {
+                                        if (calib_curve->calib_curve.count(e_itr.first) > 0)
+                                        {
+                                            calib_val = static_cast<float>(calib_curve->calib_curve.at(e_itr.first));
+                                            float n_val = (*normalizer)(yidx, xidx);
+                                            val = e_val / n_val / calib_val;
+                                        }
+                                        else
+                                        {
+                                            val = e_val;
+                                        }
+                                    }
+                                    else
+                                    {
+                                        val = e_val;
+                                    }
+                                }
+                                out_stream << val << " , ";
+                            }
+                            cur++;
+                            _export_maps_dialog->status_callback(cur, total);
+                            out_stream << "\n";
+                        }
+                        if (false == _export_maps_dialog->isActiveWindow())
+                        {
+                            out_stream.close();
+                            _export_maps_dialog->setRunEnabled(true);
+                            return;
+                        }
+                        out_stream << "\n";
+                    }
+                    out_stream.close();
+                }
+                else
+                {
+                    logE << "Could not save PNG for " << save_file_name << "\n";
+                }
+            }
+
+        }
+    }
+    if (_export_maps_dialog->get_save_screen())
+    {
+
+        QPixmap pixmap(_counts_window->rect().size());
+        _counts_window->render(&pixmap, QPoint(), QRegion(_counts_window->rect()));
+
+        QDateTime date = QDateTime::currentDateTime();
+        QString formattedTime = date.toString("yyyy.MM.dd_hh.mm.ss");
+        QByteArray formattedTimeMsg = formattedTime.toLocal8Bit();
+
+        qDebug() << "Date:" + formattedTime;
+        if (false == pixmap.save(QDir::cleanPath(export_model_dir.absolutePath() + QDir::separator() + QString("screenshot_"+formattedTime+".png")), "PNG"))
+        {
+            logE << "Could not save PNG for " << QDir::cleanPath(export_model_dir.absolutePath() + QDir::separator() + QString("screenshot_" + formattedTime + ".png")).toStdString() << "\n";
+        }
+    }
+
+    _export_maps_dialog->setRunEnabled(true);
+    _export_maps_dialog->on_open();
+    _export_maps_dialog->close();
+}
\ No newline at end of file
diff --git a/src/mvc/MapsElementsWidget.h b/src/mvc/MapsElementsWidget.h
index 96e7d75..c26f3ba 100644
--- a/src/mvc/MapsElementsWidget.h
+++ b/src/mvc/MapsElementsWidget.h
@@ -17,10 +17,11 @@
 #include <unordered_map>
 #include <gstar/CoordinateWidget.h>
 #include <gstar/CountsLookupTransformer.h>
-#include "gstar/Annotation/HotSpotMaskGraphicsItem.h"
+#include "gstar/Annotation/RoiMaskGraphicsItem.h"
 #include "mvc/ImageGridDialog.h"
 #include "preferences/Preferences.h"
 #include "gstar/MinMaxSlider.h"
+#include <mvc/ExportMapsDialog.h>
 
 class HDF5PropertyWidget;
 class QAbstractTableModel;
@@ -72,9 +73,9 @@ public slots:
 
    void model_updated();
 
-   void addHotSpotMask();
+   void addRoiMask();
 
-   void roiUpdated(gstar::HotSpotMaskGraphicsItem* ano, bool reload);
+   void roiUpdated(gstar::RoiMaskGraphicsItem* ano, bool reload);
 
    void onGridDialog();
 
@@ -92,6 +93,10 @@ public slots:
 
    void on_log_color_changed(int);
 
+   void on_export_image_pressed();
+
+   void on_export_images();
+
 protected:
 
    /**
@@ -125,7 +130,7 @@ public slots:
 
    QPushButton *_pb_perpixel_fitting;
 
-   QAction *_addHotSpotMaskAction;
+   QAction *_addRoiMaskAction;
    
    QPushButton * _grid_button;
 
@@ -150,6 +155,12 @@ public slots:
 
    QCheckBox* _chk_log_color;
 
+   QPushButton *_btn_export_as_image;
+
+   ExportMapsDialog* _export_maps_dialog;
+
+   QWidget* _counts_window;
+
    float _min_contrast_perc;
 
    float _max_contrast_perc;
diff --git a/src/mvc/MapsH5Model.cpp b/src/mvc/MapsH5Model.cpp
index 3f78cdf..0aa085d 100644
--- a/src/mvc/MapsH5Model.cpp
+++ b/src/mvc/MapsH5Model.cpp
@@ -227,6 +227,8 @@ bool MapsH5Model::load(QString filepath)
     try
     {
         _filepath = filepath;
+        _dir = QDir(filepath);
+        _datset_name = QFileInfo(filepath).fileName();
         //_is_loaded = ERROR_LOADING;
         //std::chrono::time_point<std::chrono::system_clock> start, end;
         //start = std::chrono::system_clock::now();
@@ -563,7 +565,53 @@ bool MapsH5Model::_load_scalers_9(hid_t maps_grp_id)
 
 bool MapsH5Model::_load_scan_9(hid_t maps_grp_id)
 {
-//    _scan_info.
+
+    hid_t x_id, y_id;
+    string x_axis_loc = "x_axis";
+    string y_axis_loc = "y_axis";
+
+    x_id = H5Dopen(maps_grp_id, x_axis_loc.c_str(), H5P_DEFAULT);
+    y_id = H5Dopen(maps_grp_id, y_axis_loc.c_str(), H5P_DEFAULT);
+
+    if (x_id > -1 && y_id > -1)
+    {
+        hid_t x_space_id = H5Dget_space(x_id);
+        hid_t y_space_id = H5Dget_space(y_id);
+
+        hsize_t x_dims_in[1] = { 0 };
+        hsize_t y_dims_in[1] = { 0 };
+        int xstatus_n = H5Sget_simple_extent_dims(x_space_id, &x_dims_in[0], nullptr);
+        int ystatus_n = H5Sget_simple_extent_dims(y_space_id, &y_dims_in[0], nullptr);
+        if (xstatus_n > -1 && ystatus_n > -1)
+        {
+            _x_axis.resize(x_dims_in[0]);
+            hid_t error = H5Dread(x_id, H5T_NATIVE_FLOAT, x_space_id, x_space_id, H5P_DEFAULT, &_x_axis[0]);
+            if (error > 0)
+            {
+                logW << "Could not load x_axis\n";
+            }
+            _y_axis.resize(y_dims_in[0]);
+            error = H5Dread(y_id, H5T_NATIVE_FLOAT, y_space_id, y_space_id, H5P_DEFAULT, &_y_axis[0]);
+            if (error > 0)
+            {
+                logW << "Could not load y_axis\n";
+            }
+        }
+
+        if (x_space_id > -1)
+        {
+            H5Sclose(x_space_id);
+        }
+        if (y_space_id > -1)
+        {
+            H5Sclose(y_space_id);
+        }
+
+        H5Dclose(x_id);
+        H5Dclose(y_id);
+
+    }
+
     return true;
 }
 
@@ -634,7 +682,7 @@ bool MapsH5Model::_load_integrated_spectra_9(hid_t maps_grp_id)
         error = H5Dread(max_chan_spec_id, H5T_NATIVE_DOUBLE, memoryspace_id, max_chan_dspace_id, H5P_DEFAULT, (void*)(fit_int_spec->data()));
         if (error > -1)
         {
-            _fit_int_spec_dict.insert({ "Max_Channels", fit_int_spec });
+            _max_chan_spec_dict.insert({ "Max_Channels", fit_int_spec });
             
         }
         else
@@ -648,7 +696,7 @@ bool MapsH5Model::_load_integrated_spectra_9(hid_t maps_grp_id)
         error = H5Dread(max_chan_spec_id, H5T_NATIVE_DOUBLE, memoryspace_id, max_chan_dspace_id, H5P_DEFAULT, (void*)(fit_int_spec->data()));
         if (error > -1)
         {
-            _fit_int_spec_dict.insert({ "Max_10_Channels", fit_int_spec });
+            _max_chan_spec_dict.insert({ "Max_10_Channels", fit_int_spec });
             
         }
         else
@@ -1164,11 +1212,13 @@ bool MapsH5Model::_load_scalers_10(hid_t maps_grp_id)
 
 bool MapsH5Model::_load_scan_10(hid_t maps_grp_id)
 {
-    hid_t desc_id, name_id, unit_id, val_id;
+    hid_t desc_id, name_id, unit_id, val_id, x_id, y_id;
     string extra_pvs_desc = "Scan/Extra_PVs/Description";
     string extra_pvs_name = "Scan/Extra_PVs/Names";
     string extra_pvs_unit = "Scan/Extra_PVs/Unit";
     string extra_pvs_val = "Scan/Extra_PVs/Values";
+    string x_axis_loc = "Scan/x_axis";
+    string y_axis_loc = "Scan/y_axis";
     hsize_t offset[1] = { 0, };
     hsize_t count[1] = { 1 };
     hid_t   filetype, memtype, status;
@@ -1178,6 +1228,8 @@ bool MapsH5Model::_load_scan_10(hid_t maps_grp_id)
     name_id = H5Dopen(maps_grp_id, extra_pvs_name.c_str(), H5P_DEFAULT);
     unit_id = H5Dopen(maps_grp_id, extra_pvs_unit.c_str(), H5P_DEFAULT);
     val_id = H5Dopen(maps_grp_id, extra_pvs_val.c_str(), H5P_DEFAULT);
+    x_id = H5Dopen(maps_grp_id, x_axis_loc.c_str(), H5P_DEFAULT);
+    y_id = H5Dopen(maps_grp_id, y_axis_loc.c_str(), H5P_DEFAULT);
 
     filetype = H5Tcopy(H5T_C_S1);
     H5Tset_size(filetype, 256);
@@ -1247,6 +1299,47 @@ bool MapsH5Model::_load_scan_10(hid_t maps_grp_id)
     {
         H5Dclose(val_id);
     }
+
+    if (x_id > -1 && y_id > -1)
+    {
+        hid_t x_space_id = H5Dget_space(x_id);
+        hid_t y_space_id = H5Dget_space(y_id);
+        
+        hsize_t x_dims_in[1] = { 0 };
+        hsize_t y_dims_in[1] = { 0 };
+        int xstatus_n = H5Sget_simple_extent_dims(x_space_id, &x_dims_in[0], nullptr);
+        int ystatus_n = H5Sget_simple_extent_dims(y_space_id, &y_dims_in[0], nullptr);
+        if (xstatus_n > -1 && ystatus_n > -1)
+        {
+            _x_axis.resize(x_dims_in[0]);
+            hid_t error = H5Dread(x_id, H5T_NATIVE_FLOAT, x_space_id, x_space_id, H5P_DEFAULT, &_x_axis[0]);
+            if (error > 0)
+            {
+                logW << "Could not load x_axis\n";
+            }
+            _y_axis.resize(y_dims_in[0]);
+            error = H5Dread(y_id, H5T_NATIVE_FLOAT, y_space_id, y_space_id, H5P_DEFAULT, &_y_axis[0]);
+            if (error > 0)
+            {
+                logW << "Could not load y_axis\n";
+            }
+        }
+
+        if (x_space_id > -1)
+        {
+            H5Sclose(x_space_id);
+        }
+        if (y_space_id > -1)
+        {
+            H5Sclose(y_space_id);
+        }
+
+        H5Dclose(x_id);
+        H5Dclose(y_id);
+
+    }
+
+
     return true;
 }
 
@@ -1290,7 +1383,7 @@ bool MapsH5Model::_load_integrated_spectra_10(hid_t file_id)
                 error = H5Dread(dset_id, H5T_NATIVE_DOUBLE, memoryspace_id, dataspace_id, H5P_DEFAULT, (void*)&(*spectra)[0]);
                 if (error > -1)
                 {
-                    _fit_int_spec_dict.insert({ "Max_Channels", spectra });
+                    _max_chan_spec_dict.insert({ "Max_Channels", spectra });
 
                 }
                 else
@@ -1332,7 +1425,7 @@ bool MapsH5Model::_load_integrated_spectra_10(hid_t file_id)
                 error = H5Dread(dset_id, H5T_NATIVE_DOUBLE, memoryspace_id, dataspace_id, H5P_DEFAULT, (void*)&(*spectra)[0]);
                 if (error > -1)
                 {
-                    _fit_int_spec_dict.insert({ "Max_10_Channels", spectra });
+                    _max_chan_spec_dict.insert({ "Max_10_Channels", spectra });
 
                 }
                 else
diff --git a/src/mvc/MapsH5Model.h b/src/mvc/MapsH5Model.h
index 12cc20c..815c081 100644
--- a/src/mvc/MapsH5Model.h
+++ b/src/mvc/MapsH5Model.h
@@ -10,6 +10,7 @@
 
 #include <QString>
 #include <QObject>
+#include <QDir>
 #include <hdf5.h>
 #include <unordered_map>
 #include <vector>
@@ -88,7 +89,7 @@ class MapsH5Model : public QObject
 
     std::unordered_map<std::string, data_struct::ArrayXXr<float>>* getScalers() { return &_scalers; }
 
-    bool is_fully_loaded() {return _is_fully_loaded;}
+    bool is_fully_loaded() { return _is_fully_loaded; }
 
     //data_struct::Fit_Count_Dict* getAnalyzedCounts(std::string analysis_type);
     void getAnalyzedCounts(std::string analysis_type, data_struct::Fit_Count_Dict<float>& out_counts);
@@ -100,6 +101,8 @@ class MapsH5Model : public QObject
 
     QString getDatasetName() { return _datset_name; }
 
+    QDir getDir() { return _dir; }
+
     void initialize_from_stream_block(data_struct::Stream_Block<float>* block);
 
     void update_from_stream_block(data_struct::Stream_Block<float>* block);
@@ -120,14 +123,20 @@ class MapsH5Model : public QObject
 
     Calibration_curve<double>* get_calibration_curve(string analysis_type, string scaler_name);
 
-    data_struct::Params_Override<double>* getParamOverride(){return _params_override;}
+    data_struct::Params_Override<double>* getParamOverride() { return _params_override; }
+
+    bool load_roi(const std::vector<QPoint>& roi_list, data_struct::Spectra<double>& spec);
 
-    bool load_roi(const std::vector<QPoint> &roi_list, data_struct::Spectra<double>&spec);
+    std::unordered_map<std::string, ArrayDr*> _fit_int_spec_dict;
 
-	std::unordered_map<std::string, ArrayDr*> _fit_int_spec_dict;
+    std::unordered_map<std::string, ArrayDr*> _max_chan_spec_dict;
 
     const data_struct::Scan_Info<double>* getScanInfo() { return &_scan_info; }
 
+    const std::vector<float>& get_x_axis() { return _x_axis; }
+
+    const std::vector<float>& get_y_axis() { return _y_axis; }
+
 signals:
     void model_data_updated();
 
@@ -152,7 +161,7 @@ class MapsH5Model : public QObject
 
     bool _load_analyzed_counts_9(hid_t analyzed_grp_id, std::string group_name);
 
-    bool _load_roi_9(const std::vector<QPoint> &roi_list, data_struct::Spectra<double> &spec);
+    bool _load_roi_9(const std::vector<QPoint>& roi_list, data_struct::Spectra<double>& spec);
 
     //Version 10
 
@@ -172,7 +181,7 @@ class MapsH5Model : public QObject
 
     bool _load_analyzed_counts_10(hid_t analyzed_grp_id, std::string group_name);
 
-    bool _load_roi_10(const std::vector<QPoint> &roi_list, data_struct::Spectra<double> &spec);
+    bool _load_roi_10(const std::vector<QPoint>& roi_list, data_struct::Spectra<double>& spec);
 
     std::string _analysis_enum_to_str(data_struct::Fitting_Routines val);
 
@@ -191,6 +200,8 @@ class MapsH5Model : public QObject
 
     QString _datset_name;
 
+    QDir _dir;
+
     std::unordered_map<std::string, Calibration_curve<double> > _quant_map_matrix;
 
     std::unordered_map<std::string, Calibration_curve<double> > _quant_map_nnls;
@@ -199,6 +210,9 @@ class MapsH5Model : public QObject
 
     data_struct::Scan_Info<double> _scan_info;
 
+    std::vector<float> _x_axis;
+    std::vector<float> _y_axis;
+
     float _version;
 
     bool _initialized_by_stream_block;
diff --git a/src/mvc/MapsWorkspaceFilesWidget.cpp b/src/mvc/MapsWorkspaceFilesWidget.cpp
index 1fb8729..dd110e7 100644
--- a/src/mvc/MapsWorkspaceFilesWidget.cpp
+++ b/src/mvc/MapsWorkspaceFilesWidget.cpp
@@ -14,6 +14,10 @@
 #include <QRegExp>
 #include "core/GlobalThreadPool.h"
 
+
+const QString STR_PROCESS("process");
+const QString STR_H5_EXPORT("hdf5_export");
+
 /*---------------------------------------------------------------------------*/
 
 MapsWorkspaceFilesWidget::MapsWorkspaceFilesWidget(QWidget* parent) : QWidget(parent)
@@ -48,19 +52,20 @@ void MapsWorkspaceFilesWidget::createLayout()
     _h5_tab_widget->appendFilterHelpAction(h5avg_file);
     _h5_tab_widget->appendFilterHelpAction(h5det_file);
 
-    connect(_h5_tab_widget, &FileTabWidget::customContext, this, &MapsWorkspaceFilesWidget::onPerPixelProcess);
-
-    _h5_tab_widget->addCustomContext("hdf5", "Per Pixel Process");
+    _h5_tab_widget->addCustomContext(STR_PROCESS, "Per Pixel Process");
+    // TODO: need to implement
+    //_h5_tab_widget->addCustomContext(STR_H5_EXPORT, "Export Images"); 
     connect(_h5_tab_widget, &FileTabWidget::loadList, [this](const QStringList& sl) { this->onOpenModel(sl, MODEL_TYPE::MAPS_H5); });
     connect(_h5_tab_widget, &FileTabWidget::unloadList, [this](const QStringList& sl) { this->onCloseModel(sl, MODEL_TYPE::MAPS_H5); });
     connect(_h5_tab_widget, &FileTabWidget::processList, this, &MapsWorkspaceFilesWidget::onPerPixelProcessList);
+    connect(_h5_tab_widget, &FileTabWidget::customContext, this, &MapsWorkspaceFilesWidget::onCustomContext);
 
     _mda_tab_widget = new FileTabWidget();
     connect(_mda_tab_widget, &FileTabWidget::loadList, [this](const QStringList& sl) { this->onOpenModel(sl, MODEL_TYPE::RAW); });
     connect(_mda_tab_widget, &FileTabWidget::unloadList, [this](const QStringList& sl) { this->onCloseModel(sl, MODEL_TYPE::RAW); });
     connect(_mda_tab_widget, &FileTabWidget::processList, this, &MapsWorkspaceFilesWidget::onPerPixelProcessList);
-    connect(_mda_tab_widget, &FileTabWidget::customContext, this, &MapsWorkspaceFilesWidget::onPerPixelProcess);
-    _mda_tab_widget->addCustomContext("mda", "Per Pixel Process");
+    connect(_mda_tab_widget, &FileTabWidget::customContext, this, &MapsWorkspaceFilesWidget::onCustomContext);
+    _mda_tab_widget->addCustomContext(STR_PROCESS, "Per Pixel Process");
 
     _vlm_tab_widget = new FileTabWidget();
     _vlm_tab_widget->setProcessButtonVisible(false);
@@ -351,9 +356,17 @@ void MapsWorkspaceFilesWidget::clearLists()
 
 /*---------------------------------------------------------------------------*/
 
-void MapsWorkspaceFilesWidget::onPerPixelProcess(const QString& context_label, const QStringList& file_list)
+void MapsWorkspaceFilesWidget::onCustomContext(const QString& context_label, const QStringList& file_list)
 {
-    onPerPixelProcessList(file_list);
+    if (context_label == STR_PROCESS)
+    {
+        onPerPixelProcessList(file_list);
+    }
+    else if (context_label == STR_H5_EXPORT)
+    {
+        //onExportImages(file_list);
+    }
+
 }
 
 /*---------------------------------------------------------------------------*/
@@ -380,3 +393,5 @@ void MapsWorkspaceFilesWidget::onProcessed_list_update()
         _model->reload_analyzed();
     }
 }
+
+/*---------------------------------------------------------------------------*/
\ No newline at end of file
diff --git a/src/mvc/MapsWorkspaceFilesWidget.h b/src/mvc/MapsWorkspaceFilesWidget.h
index 4c0604a..594dbd7 100644
--- a/src/mvc/MapsWorkspaceFilesWidget.h
+++ b/src/mvc/MapsWorkspaceFilesWidget.h
@@ -76,7 +76,7 @@ public slots:
 
     void onCloseModel(const QStringList& names_list, MODEL_TYPE mt);
 
-    void onPerPixelProcess(const QString& context_label, const QStringList& file_list);
+    void onCustomContext(const QString& context_label, const QStringList& file_list);
 
     void onPerPixelProcessList(const QStringList& file_list);
 
diff --git a/src/mvc/NumericPrecDelegate.cpp b/src/mvc/NumericPrecDelegate.cpp
new file mode 100644
index 0000000..26e2136
--- /dev/null
+++ b/src/mvc/NumericPrecDelegate.cpp
@@ -0,0 +1,19 @@
+/*-----------------------------------------------------------------------------
+ * Copyright (c) 2022, UChicago Argonne, LLC
+ * See LICENSE file.
+ *---------------------------------------------------------------------------*/
+
+#include <mvc/NumericPrecDelegate.h>
+
+/*---------------------------------------------------------------------------*/
+
+NumericPrecDelegate::NumericPrecDelegate(QObject* parent) :	QStyledItemDelegate(parent)
+{
+}
+
+QString NumericPrecDelegate::displayText(const QVariant& value, const QLocale& locale) const
+{
+	QString formattedNum = locale.toString(value.toDouble(), 'f', 14);
+	return formattedNum;
+
+};
\ No newline at end of file
diff --git a/src/mvc/NumericPrecDelegate.h b/src/mvc/NumericPrecDelegate.h
new file mode 100644
index 0000000..c121054
--- /dev/null
+++ b/src/mvc/NumericPrecDelegate.h
@@ -0,0 +1,45 @@
+/*-----------------------------------------------------------------------------
+ * Copyright (c) 2022, UChicago Argonne, LLC
+ * See LICENSE file.
+ *---------------------------------------------------------------------------*/
+
+#ifndef NUMERIC_PREC_DELEGATE_H
+#define NUMERIC_PREC_DELEGATE_H
+
+/*---------------------------------------------------------------------------*/
+
+#include <QStyledItemDelegate>
+#include <QDoubleSpinBox>
+
+class NumericPrecDelegate : public QStyledItemDelegate
+{
+	Q_OBJECT
+public:
+	explicit NumericPrecDelegate(QObject* parent = 0);
+	virtual QString displayText(const QVariant& value, const QLocale& locale) const;
+
+    QWidget* createEditor(QWidget* parent, const QStyleOptionViewItem& option,
+        const QModelIndex& index) const Q_DECL_OVERRIDE
+    {
+        auto w = QStyledItemDelegate::createEditor(
+            parent, option, index);
+
+        auto sp = qobject_cast<QDoubleSpinBox*>(w);
+        if (sp)
+        {
+            sp->setDecimals(14);
+        }
+        return w;
+    }
+
+signals:
+
+public slots:
+
+};
+
+/*---------------------------------------------------------------------------*/
+
+#endif
+
+/*---------------------------------------------------------------------------*/
diff --git a/src/mvc/PerPixelFitWidget.cpp b/src/mvc/PerPixelFitWidget.cpp
index 0076afb..174f748 100644
--- a/src/mvc/PerPixelFitWidget.cpp
+++ b/src/mvc/PerPixelFitWidget.cpp
@@ -5,7 +5,6 @@
 
 #include <mvc/PerPixelFitWidget.h>
 #include <QApplication>
-#include <QGroupBox>
 #include <data_struct/analysis_job.h>
 #include <core/process_whole.h>
 #include <QScrollArea>
@@ -51,7 +50,7 @@ void PerPixelFitWidget::createLayout()
     _btn_cancel = new QPushButton("Cancel");
     connect(_btn_cancel, &QPushButton::released, this, &PerPixelFitWidget::close);
 
-    QGroupBox* processing_grp = new QGroupBox();
+    _processing_grp = new QGroupBox();
     QVBoxLayout* v_proc_layout = new QVBoxLayout();
     _proc_roi = new QCheckBox("Region of Interest Analysis");
     _proc_nnls = new QCheckBox("Non-Negative Least Squares Analysis");
@@ -61,15 +60,15 @@ void PerPixelFitWidget::createLayout()
     v_proc_layout->addWidget(_proc_nnls);
     v_proc_layout->addWidget(_proc_matrix);
 
-    processing_grp->setLayout(v_proc_layout);
-    processing_grp->setTitle("Processing Options");
+    _processing_grp->setLayout(v_proc_layout);
+    _processing_grp->setTitle("Processing Options");
 
-    QGroupBox* saving_grp = new QGroupBox();
+    _saving_grp = new QGroupBox();
     QVBoxLayout* v_save_layout = new QVBoxLayout();
     _save_avg = new QCheckBox("Generate Avg H5");
     _save_v9 = new QCheckBox("Add v9 soft links");
     _save_exchange = new QCheckBox("Add Exchange format");
-    _save_csv = new QCheckBox("Save CVS of integrated fits");
+    _save_csv = new QCheckBox("Save CSV of integrated fits");
     _perform_quantification = new QCheckBox("Perform Quantification (maps_standardinfo.txt)");
 
     _le_detectors = new QLineEdit("0,1,2,3,4,5,6");
@@ -80,8 +79,8 @@ void PerPixelFitWidget::createLayout()
     v_save_layout->addWidget(_save_csv);
     v_save_layout->addWidget(_perform_quantification);
 
-    saving_grp->setLayout(v_save_layout);
-    saving_grp->setTitle("Export Options");
+    _saving_grp->setLayout(v_save_layout);
+    _saving_grp->setTitle("Export Options");
 
     _file_list_model = new QStandardItemModel();
     _file_list_view = new QListView();
@@ -92,9 +91,9 @@ void PerPixelFitWidget::createLayout()
     buttonlayout->addWidget(_btn_run);
     buttonlayout->addWidget(_btn_cancel);
 
-    QHBoxLayout* proc_save_layout = new QHBoxLayout();
-    proc_save_layout->addWidget(processing_grp);
-    proc_save_layout->addWidget(saving_grp);
+    _proc_save_layout = new QHBoxLayout();
+    _proc_save_layout->addWidget(_processing_grp);
+    _proc_save_layout->addWidget(_saving_grp);
 
     QHBoxLayout* hbox_progresss_blocks = new QHBoxLayout();
     hbox_progresss_blocks->addWidget(new QLabel("Current Fitting:"));
@@ -106,7 +105,7 @@ void PerPixelFitWidget::createLayout()
 
     QVBoxLayout* layout = new QVBoxLayout();
     layout->addWidget(_le_detectors);
-    layout->addItem(proc_save_layout);
+    layout->addItem(_proc_save_layout);
     layout->addWidget(_file_list_view);
     layout->addItem(buttonlayout);
     layout->addItem(hbox_progresss_blocks);
@@ -134,6 +133,10 @@ void PerPixelFitWidget::updateFileList(QStringList file_list)
 void PerPixelFitWidget::runProcessing()
 {
     _btn_run->setEnabled(false);
+    _processing_grp->setEnabled(false);
+    _saving_grp->setEnabled(false);
+    _le_detectors->setEnabled(false);
+    _file_list_view->setEnabled(false);
     //run in thread
     data_struct::Analysis_Job<double> analysis_job;
     analysis_job.dataset_directory = _directory;
@@ -264,6 +267,11 @@ void PerPixelFitWidget::runProcessing()
     iterate_datasets_and_update(analysis_job);
 
     _btn_run->setEnabled(true);
+    _processing_grp->setEnabled(true);
+    _saving_grp->setEnabled(true);
+    _le_detectors->setEnabled(true);
+    _file_list_view->setEnabled(true);
+    _btn_cancel->setText("Close");
     emit processed_list_update();
 }
 
diff --git a/src/mvc/PerPixelFitWidget.h b/src/mvc/PerPixelFitWidget.h
index 18f172f..c5b27b9 100644
--- a/src/mvc/PerPixelFitWidget.h
+++ b/src/mvc/PerPixelFitWidget.h
@@ -23,6 +23,7 @@
 #include <QCheckBox>
 #include <QEventLoop>
 #include <QLineEdit>
+#include <QGroupBox>
 #include <thread>
 
 /*---------------------------------------------------------------------------*/
@@ -102,6 +103,12 @@ public slots:
    
    QLineEdit* _le_detectors;
    
+   QHBoxLayout* _proc_save_layout;
+
+   QGroupBox* _saving_grp;
+
+   QGroupBox* _processing_grp;
+
    size_t _total_blocks;
 };
 
diff --git a/src/mvc/SpectraWidgetSettingsDialog.cpp b/src/mvc/SpectraWidgetSettingsDialog.cpp
index c161280..187353f 100644
--- a/src/mvc/SpectraWidgetSettingsDialog.cpp
+++ b/src/mvc/SpectraWidgetSettingsDialog.cpp
@@ -31,6 +31,7 @@ void SpectraWidgetSettingsDialog::createLayout()
     bool log10 = Preferences::inst()->getValue(STR_PFR_LOG_10).toBool();
     bool detailed = Preferences::inst()->getValue(STR_PFR_DETAILED_FIT_SPEC).toBool();
 	bool fit_int = Preferences::inst()->getValue(STR_PFR_SHOW_FIT_INT_SPEC).toBool();
+    bool max_chan = Preferences::inst()->getValue(STR_PFR_SHOW_MAX_CHAN_SPEC).toBool();
     
     _chkLog10 = new QCheckBox("Display Y axis in Log10");
     _chkLog10->setChecked(log10);
@@ -38,11 +39,14 @@ void SpectraWidgetSettingsDialog::createLayout()
     _chkDetailedFit->setChecked(detailed);
 	_chkFit_Int = new QCheckBox("Show Fit_Int_Spectras (Summed per pixel fitting)");
 	_chkFit_Int->setChecked(fit_int);
+    _chkMax_Chan = new QCheckBox("Show Max Channels Spectras");
+    _chkMax_Chan->setChecked(max_chan);
 
     QVBoxLayout* chklayout = new QVBoxLayout();
     chklayout->addWidget(_chkLog10);
     chklayout->addWidget(_chkDetailedFit);
 	chklayout->addWidget(_chkFit_Int);
+    chklayout->addWidget(_chkMax_Chan);
 
 
     _btn_accept = new QPushButton("Accept");
@@ -71,6 +75,7 @@ void SpectraWidgetSettingsDialog::onAccepted()
     Preferences::inst()->setValue(STR_PFR_LOG_10, _chkLog10->isChecked());
     Preferences::inst()->setValue(STR_PFR_DETAILED_FIT_SPEC, _chkDetailedFit->isChecked());
 	Preferences::inst()->setValue(STR_PFR_SHOW_FIT_INT_SPEC, _chkFit_Int->isChecked());
+    Preferences::inst()->setValue(STR_PFR_SHOW_MAX_CHAN_SPEC, _chkMax_Chan->isChecked());
     Preferences::inst()->save();
 	close();
 }
@@ -82,4 +87,4 @@ void SpectraWidgetSettingsDialog::onCancel()
     close();
 }
 
-/*---------------------------------------------------------------------------*/
\ No newline at end of file
+/*---------------------------------------------------------------------------*/
diff --git a/src/mvc/SpectraWidgetSettingsDialog.h b/src/mvc/SpectraWidgetSettingsDialog.h
index 22dfe8c..949a5eb 100644
--- a/src/mvc/SpectraWidgetSettingsDialog.h
+++ b/src/mvc/SpectraWidgetSettingsDialog.h
@@ -61,6 +61,8 @@ public slots:
 
    QCheckBox* _chkFit_Int;
 
+   QCheckBox* _chkMax_Chan;
+
    //QTextEdit *_textEdit;
 
    QPushButton *_btn_run;
diff --git a/src/preferences/Preferences.h b/src/preferences/Preferences.h
index fe8b56a..298705b 100644
--- a/src/preferences/Preferences.h
+++ b/src/preferences/Preferences.h
@@ -51,6 +51,7 @@
 #define STR_PFR_LOG_10 "Log10YAxis"
 #define STR_PFR_DETAILED_FIT_SPEC "DetailedFitSpectra"
 #define STR_PFR_SHOW_FIT_INT_SPEC "ShowFitIntSpectra"
+#define STR_PFR_SHOW_MAX_CHAN_SPEC "ShowMaxChanSpectra"
 #define STR_GRID_ROWS "GridRows"
 #define STR_GRID_COLS "GridCols"
 #define STR_COLORMAP "ColorMap"