chore: migrate from JB to Quarto (#2, #3)

.github/workflows/deploy.yml

@@ -13,9 +13,9 @@ jobs:
     strategy:
       matrix:
         os: [ubuntu-latest]
-        python-version: [3.8]
+        python-version: [3.9]
     steps:
-    - uses: actions/checkout@v2
+    - uses: actions/checkout@v3
 
     # Install dependencies
     - name: Set up Python ${{ matrix.python-version }}
@@ -29,17 +29,22 @@ jobs:
     - name: Copy README
       run: |
         cp README.md reports/index.md
-    # Build the book
-    - name: Build the book
-      run: |
-        jupyter-book build reports
-    - name: Clean notebook outputs for nicer HTML render
-      run: curl -s -S https://gist.githubusercontent.com/AlFontal/896e180f9f7772c4825067591f34c94b/raw > clean_notebook.py; 
-              python clean_notebook.py --path reports
-
-    # Deploy the book's HTML to gh-pages branch
-    - name: GitHub Pages action
-      uses: peaceiris/actions-gh-pages@v3.6.1
+    # Set up Quarto
+    - name: Set up Quarto
+      uses: quarto-dev/quarto-actions/setup@v2
+    # Render Quarto HTML
+    - name: Render Quarto site
+      uses: quarto-dev/quarto-actions/render@v2
+      with:
+        to: html
+        path: reports/
+    # Clean up HTML outputs
+    - name: Process HTML outputs for nicer site render
+      run: curl -s -S https://gist.githubusercontent.com/AlFontal/233c9ad8afe27e68f23138fcacf2d767/raw > clean_notebook.py; 
+              python clean_notebook.py --path reports/_site
+    # Deploy to Github Pages
+    - name: Deploy to Github Pages
+      uses: peaceiris/actions-gh-pages@v3.9.0
       with:
         github_token: ${{ secrets.GITHUB_TOKEN }}
-        publish_dir: reports/_build/html
+        publish_dir: reports/_site

reports/_quarto.yml

@@ -0,0 +1,63 @@
+project:
+  type: website
+  render:
+    - index.md
+    - prefecture_weighted_averages.ipynb
+
+execute: 
+  freeze: true  # We don't want to re-execute notebooks in every build
+
+website:
+  title: "Japan's Environmental Data"
+  favicon: assets/favicon.ico
+
+  navbar:
+    logo: assets/logo.png
+
+    right:
+
+      - text: Home
+        href: index.md
+
+      - text: Reports
+        menu:
+          - text: "Prefecture Weighted Estimates"
+            href: prefecture_weighted_averages.ipynb
+
+      - text: About
+        menu:
+          - text: "This Site"
+            href: index.qmd
+          - text: "ISGlobal"
+            href: https://www.isglobal.org/en
+          - text: "Climate & Health Programme"
+            href: https://www.isglobal.org/en/-/clima-y-salud
+          - text: "HELICAL ITN"
+            href: https://www.helical-itn.eu/
+          - text: "Alejandro Fontal"
+            href: https://alfontal.github.io
+
+      - icon: github
+        menu: 
+        - text: "GitHub Repository"
+          href: https://github.com/AlFontal/environmental-data-japan
+        - text: "Raise an issue"
+          href: https://github.com/AlFontal/environmental-data-japan
+      - icon: envelope
+        href: mailto:alejandro.fontal.92@gmail.com
+        aria-label: Mail
+
+format:
+  html:
+    number-sections: true
+    highlight-style: github
+    theme:
+      light: litera
+    css: custom.css
+    toc: true
+    toc-title: "CONTENTS"
+    toc-location: right
+    code-tools:
+      source: true
+      toggle: true
+    code-summary: "Show Code"

reports/custom.css

@@ -0,0 +1,38 @@
+pre code {
+    font-size: 0.8em
+}
+
+.table {
+  font-size: 0.8em;
+}
+
+p {
+  text-align: justify;
+}
+
+figcaption.figure-caption {
+  font-size: 0.8em;
+  text-align: center;
+}
+
+summary {
+  font-size: 0.8em;
+  font-family: Georgia,Cambria,"Times New Roman",Times,serif
+}
+
+header {
+  font-family: Georgia,Cambria,"Times New Roman",Times,serif;
+}
+
+navbar {
+  font-family: Georgia,Cambria,"Times New Roman",Times,serif;
+}
+
+body {
+  font-family: Georgia,Cambria,"Times New Roman",Times,serif;
+}
+
+.lead {
+  font-family: Georgia,Cambria,"Times New Roman",Times,serif;
+  font-size: 1.275rem;
+}