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sample_output_10.txt
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sample_output_10.txt
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Copy to Excel:
2 1 0 4
8 3 0 7
27 1 0 8
36 1 0 8
44 0 1 3
69 1 0 4
Endpoint Coordinates --------------------------------------------------
Endpoint x (px) y (px) z (sl) um from surface (xy | z - radius)
Endpoint 7: 155.568514085 543.226964789 14.0 10.522941702 11.392314702
Endpoint 13: 343.334598592 606.1295 33.0 9.4545214797 10.3238944797
Endpoint 23: 252.170992958 482.683098592 37.0 9.6591421322 10.5285151322
Endpoint 26: 340.915035211 530.434838028 34.0 9.76506662902 10.634439629
Endpoint 35: 195.138450704 528.826323944 42.0 9.30002018026 10.1693931803
Endpoint 43: 173.868929577 615.144274648 34.0 9.28116858261 10.1505415826
Endpoint 77: 203.769788732 654.824971831 17.0 9.25236212049 10.1217351205
Branch # Dendrites Axons Position
------------------------------------------------
Branch 2 1 0 4
Branch 8 3 0 7
Branch 27 1 0 8
Branch 36 1 0 8
Branch 44 0 1 3
Branch 69 1 0 4
Number of Ends: 7
Number of Branches: 6
Cell body (px, px, sl): [255.07147887323944, 572.2909295774648, 23.0]
Midslice: 23.0
Pos height (slices): 1.6
Pos height (um): 0.8
Z-radius (um): 4.0
.swc Coordinates (pre-calculated um) ---------------------------------
Branch 2: 29.478733 79.84832 8.5
Branch 8: 42.477169 80.725876 13.5
Branch 27: 29.702835 80.136597 14.5
Branch 36: 31.058735 82.229607 14.0
Branch 44: 37.001541 77.118195 8.5
Branch 69: 29.942419 82.913612 8.5
Image Coordinates (px, px, slice) ------------------------------------
Branch 2: 207.596711268 562.312112676 18.0
Branch 8: 299.134992958 568.492084507 28.0
Branch 27: 209.174894366 564.342232394 30.0
Branch 36: 218.723485915 579.081739437 29.0
Branch 44: 260.574232394 543.085880282 18.0
Branch 69: 210.862105634 583.898676056 18.0
Coordinates Relative to Center (px, px, slice) -----------
Branch 2: -47.4747676056 -9.97881690141 -5.0
Branch 8: 44.0635140845 -3.79884507042 5.0
Branch 27: -45.896584507 -7.9486971831 7.0
Branch 36: -36.3479929577 6.79080985915 6.0
Branch 44: 5.50275352113 -29.2050492958 -5.0
Branch 69: -44.2093732394 11.6077464789 -5.0
Coordinates Relative to Center (um) ----------------------------------
Branch 2: -6.741417 -1.416992 -2.5
Branch 8: 6.257019 -0.539436 2.5
Branch 27: -6.517315 -1.128715 3.5
Branch 36: -5.161415 0.964295 3.0
Branch 44: 0.781391 -4.147117 -2.5
Branch 69: -6.277731 1.6483 -2.5
Surface Coordinates (Points of Origin) (um) --------------------------
Branch 2: -3.679641967 -0.773431346867 -1.36456547896
Branch 8: 3.70263423588 -0.319214981074 1.47939227765
Branch 27: -3.48367030186 -0.6033268186 1.87083884338
Branch 36: -3.41401855549 0.637833040545 1.98435035091
Branch 44: 0.637218306961 -3.38194178524 -2.03873063217
Branch 69: -3.6103069514 0.947933090474 -1.43774356985