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SING_pref3_ubuntu18_py2_gcc11.sh
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SING_pref3_ubuntu18_py2_gcc11.sh
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Bootstrap: docker
From: ubuntu:18.04
%environment
LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:/opt/lofar/lib:/opt/casacore/lib:/opt/pybdsf/lib:/opt/dysco/lib:/opt/LOFARBeam/lib/:/opt/aoflagger/lib:/opt/intel/mkl/lib/intel64_lin:/opt/armadillo/lib/:/opt/EveryBeam/lib/:/usr/local/cuda-11.6/lib64/:/usr/local/cuda-11.6/targets/x86_64-linux/lib/:/opt/OpenBLAS/lib:/opt/SuperLU/lib/
PATH=${PATH}:/opt/lofar/bin:/opt/dysco/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/aoflagger/bin:/opt/RMextract-0.4/bin:/opt/casacore/bin:/opt/pybdsf/bin:/opt/WSClean/bin:/opt/LSMTool/bin:/opt/LoSoTo/bin:/opt/aoflagger/bin
PYTHONPATH=${PYTHONPATH}:/opt/lofar/lib/python2.7/site-packages:/opt/RMextract-0.4/lib/python2.7/site-packages:/opt/LSMTool/lib/python2.7/site-packages:/opt/LoSoTo/lib/python2.7/site-packages:/opt/pybdsf/lib/python2.7/site-packages:/opt/pybdsf/lib64/python2.7/site-packages:/opt/python-casacore/lib/python2.7/site-packages:/opt/python-casacore/lib64/python2.7/site-packages:/opt/LOFARBeam/lib/python2.7/site-packages:/opt/pyFFTW/lib/python2.7/site-packages
AOFLAGGERROOT=/opt/aoflagger
CASARCFILES=/opt/lofar/.casarc
CASAROOT=/opt/casacore
HDF5ROOT=/usr/local
LOFARROOT=/opt/lofar
PYRAPROOT=/opt/python-casacore
WCSROOT=/opt/wcslib
export LD_LIBRARY_PATH PATH PYTHONPATH
export AOFLAGGERROOT CASARCFILES CASAROOT HDF5ROOT LOFARROOT PYRAPROOT WCSROOT
%post
# https://svn.astron.nl/LOFAR/tags/LOFAR-Release-3_2_18/Docker/lofar-base/Dockerfile.tmpl
# gcc -march=native -E -v - </dev/null 2>&1 | grep cc1
export INSTALLDIR=/opt
export DEBIAN_FRONTEND=noninteractive
export PYTHON_VERSION=2.7
export AOFLAGGER_VERSION=2.15.0
export ARMADILLO_VERSION=11.0.0
export BOOST_VERSION=1_68_0
export BOOST_VERSIONdots=1.68.0
export CASACORE_VERSION=2.4.1
export CMAKE_VERSION=3.23.0
export DP3_VERSION=4.2
export FFTW_VERSION=3.3.10
export GCC_VERSION_COMPATIBILITY=9 # 9.3
export GCC_VERSION=11 # 11.1
export HDF5_VERSION=1.8.21
export LOFAR_BRANCH=tags/LOFAR-Release-3_2_18
export LOFAR_BUILDVARIANT=gnucxx11_optarch
export LOFAR_REVISION=43260
export MKL_VERSION=2020.4-912
# export MKL_ONEAPI_VERSION=2021.4.0
export NUMEXPR_VERSION=2.7.3
export NUMPY3_VERSION=1.19.5
export PYFFTW_VERSION=d74d032
export PYTHON_CASACORE_VERSION=2.1.2
export RMEXTRACT_VERSION=0.4
export WCSLIB_VERSION=7.9
# export EVERYBEAM_VERSION=0.2.0
# export WSCLEAN_VERSION=3.0
export J=27
export CMAKE_ROOT=/usr/local/share/cmake-3.23
export FFLAGS=-fPIC
export LD_LIBRARY_PATH=/opt/casacore/lib/:/opt/wcslib/lib/:/opt/dysco/lib
export PATH=${PATH}:/opt/casacore/bin/:/opt/dysco/bin
export PYTHONPATH=/opt/python-casacore/lib/python2.7/site-packages:/opt/python-casacore/lib64/python2.7/site-packages:/opt/LoSoTo/lib/python2.7/site-packages:/opt/LSMTool/lib/python2.7/site-packages:/opt/RMextract-0.4/lib/python2.7/site-packages
echo 'ALL ALL=(ALL) NOPASSWD:ALL' >> /etc/sudoers
sed -i 's/requiretty/!requiretty/g' /etc/sudoers
## Base and runtime dependencies
apt-get update -qq
apt-get install -y -qq apt-utils wget mc libcfitsio-bin python-pip cython pkg-config # libopenblas-base
#pip install -q numpy # https://software.intel.com/content/www/us/en/develop/articles/numpyscipy-with-intel-mkl.html
pip install -q pyfits pywcs python-monetdb
pip install -q configparser
pip install -q wcsaxes
pip install -q xmlrunner
pip install -q APLpy==1.1.1
# ***********************
# CUDA
# ***********************
# https://sylabs.io/guides/3.7/user-guide/gpu.html
# checks driver version: nvidia-smi
# install driver: ubuntu-drivers autoinstall && apt install nvidia-driver-450 && shutdown -r now # https://www.linuxbabe.com/ubuntu/install-nvidia-driver-ubuntu-18-04
# https://gitlab.com/astron-idg/idg/-/blob/master/Dockerfiles/ubuntu-18.04
# sudo nvidia-uninstall
apt-get install -y libxml2
cd /tmp/
rm -r -f cuda*
wget -q --retry-connrefused https://developer.download.nvidia.com/compute/cuda/11.6.2/local_installers/cuda_11.6.2_510.47.03_linux.run
chmod +x /tmp/cuda*
/tmp/cuda* --silent --toolkit
rm -f cuda_11.6.2_510.47.03_linux.run
ln -s /usr/local/cuda-11.6/targets/x86_64-linux/lib/stubs/libcuda.so /usr/lib/libcuda.so.1 # https://github.com/tensorflow/tensorflow/issues/4078
# nvidia-smi -l 2
# nvidia-smi --query-gpu=utilization.gpu --format=csv --loop=1
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:/usr/local/cuda-11.6/lib64/:/usr/local/cuda-11.6/targets/x86_64-linux/lib/stubs/
# ***********************
# gcc, g++ i gfortran - compatibility
# ***********************
apt-get install -y -qq gfortran
apt-get install -y -qq software-properties-common
echo -ne "\n \n"| add-apt-repository ppa:ubuntu-toolchain-r/test
apt-get update -qq
apt-get install -y gcc-${GCC_VERSION_COMPATIBILITY} g++-${GCC_VERSION_COMPATIBILITY} gfortran-${GCC_VERSION_COMPATIBILITY}
update-alternatives --install /usr/bin/gcc gcc /usr/bin/gcc-7 30 --slave /usr/bin/gcc-ar gcc-ar /usr/bin/gcc-ar-7 --slave /usr/bin/gcc-nm gcc-nm /usr/bin/gcc-nm-7 --slave /usr/bin/gcc-ranlib gcc-ranlib /usr/bin/gcc-ranlib-7
update-alternatives --install /usr/bin/gcc gcc /usr/bin/gcc-${GCC_VERSION_COMPATIBILITY} 40 --slave /usr/bin/gcc-ar gcc-ar /usr/bin/gcc-ar-${GCC_VERSION_COMPATIBILITY} --slave /usr/bin/gcc-nm gcc-nm /usr/bin/gcc-nm-${GCC_VERSION_COMPATIBILITY} --slave /usr/bin/gcc-ranlib gcc-ranlib /usr/bin/gcc-ranlib-${GCC_VERSION_COMPATIBILITY}
#bash -c "2 | update-alternatives --config gcc"
gcc -v
update-alternatives --install /usr/bin/g++ g++ /usr/bin/g++-7 30
update-alternatives --install /usr/bin/g++ g++ /usr/bin/g++-${GCC_VERSION_COMPATIBILITY} 40
update-alternatives --set c++ /usr/bin/g++
#bash -c "0 | update-alternatives --config g++"
g++ -v
update-alternatives --install /usr/bin/gfortran gfortran /usr/bin/gfortran-7 40
update-alternatives --install /usr/bin/gfortran gfortran /usr/bin/gfortran-${GCC_VERSION_COMPATIBILITY} 60
#bash -c "0 | update-alternatives --config gfortran"
gfortran -v
# ***********************
# gcc, g++ i gfortran
# ***********************
apt-get install -y gcc-${GCC_VERSION} g++-${GCC_VERSION} gfortran-${GCC_VERSION}
update-alternatives --install /usr/bin/gcc gcc /usr/bin/gcc-${GCC_VERSION} 50 --slave /usr/bin/gcc-ar gcc-ar /usr/bin/gcc-ar-${GCC_VERSION} --slave /usr/bin/gcc-nm gcc-nm /usr/bin/gcc-nm-${GCC_VERSION} --slave /usr/bin/gcc-ranlib gcc-ranlib /usr/bin/gcc-ranlib-${GCC_VERSION}
update-alternatives --install /usr/bin/g++ g++ /usr/bin/g++-${GCC_VERSION} 50
update-alternatives --set c++ /usr/bin/g++
update-alternatives --install /usr/bin/gfortran gfortran /usr/bin/gfortran-${GCC_VERSION} 70
# ***********************
# OpenBLAS
# ***********************
apt-get install -y -qq git
mkdir -p ${INSTALLDIR}/OpenBLAS/
cd ${INSTALLDIR}/OpenBLAS/
git clone https://github.com/xianyi/OpenBLAS.git src/
# cd src/
#git checkout ${OPENBLAS_VERSION}
cd ${INSTALLDIR}/OpenBLAS/src/
make -j ${J}
make install PREFIX=${INSTALLDIR}/OpenBLAS USE_OPENMP=0 NUM_THREADS=56 TARGET=SKYLAKEX
cd ../..
rm -rf ${INSTALLDIR}/OpenBLAS/src/
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${INSTALLDIR}/OpenBLAS/lib/
# ***********************
# MKL
# ***********************
# apt-cache policy intel-mkl-64bit-202*
# http://dirk.eddelbuettel.com/blog/2018/04/15/
cd /tmp/
wget -q --retry-connrefused https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS-2019.PUB
apt-key add GPG-PUB-KEY-INTEL-SW-PRODUCTS-2019.PUB
rm GPG-PUB-KEY-INTEL-SW-PRODUCTS-2019.PUB
sh -c 'echo deb https://apt.repos.intel.com/mkl all main > /etc/apt/sources.list.d/intel-mkl.list'
apt-get update
apt-get install -y intel-mkl-64bit-${MKL_VERSION}
update-alternatives --install /usr/lib/x86_64-linux-gnu/libblas.so libblas.so-x86_64-linux-gnu /opt/intel/mkl/lib/intel64/libmkl_rt.so 50
update-alternatives --install /usr/lib/x86_64-linux-gnu/libblas.so.3 libblas.so.3-x86_64-linux-gnu /opt/intel/mkl/lib/intel64/libmkl_rt.so 50
update-alternatives --install /usr/lib/x86_64-linux-gnu/liblapack.so liblapack.so-x86_64-linux-gnu /opt/intel/mkl/lib/intel64/libmkl_rt.so 50
update-alternatives --install /usr/lib/x86_64-linux-gnu/liblapack.so.3 liblapack.so.3-x86_64-linux-gnu /opt/intel/mkl/lib/intel64/libmkl_rt.so 50
echo "/opt/intel/lib/intel64" > /etc/ld.so.conf.d/mkl.conf
echo "/opt/intel/mkl/lib/intel64" >> /etc/ld.so.conf.d/mkl.conf
echo "MKL_THREADING_LAYER=GNU" >> /etc/environment
ldconfig
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${INSTALLDIR}/intel/mkl/lib/intel64_lin
# MKL is detected (usually through BLAS) by:
# superlu
# armadillo
# casacore
# aoflagger
# lofarsoft
# lofarbeam
# idg
# everybeam
# dp3
# wsclean
# numpy, scipy, numexpr
# ***********************
# MKL oneAPI
# ***********************
# https://software.intel.com/content/www/us/en/develop/documentation/installation-guide-for-intel-oneapi-toolkits-linux/top/installation/install-using-package-managers/apt.html
# /opt/intel/oneapi/mkl/latest/include
# cd /tmp/
# wget -q --retry-connrefused https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB
# apt-key add GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB
# rm GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB
# sh -c 'echo deb https://apt.repos.intel.com/oneapi all main > /etc/apt/sources.list.d/oneAPI.list'
# # add-apt-repository "deb https://apt.repos.intel.com/oneapi all main"
# apt-get update
# # apt-get install -y intel-oneapi-mkl-${MKL_ONEAPI_VERSION}
# apt-get install -y intel-oneapi-mkl-devel
# update-alternatives --install /usr/lib/x86_64-linux-gnu/libblas.so libblas.so-x86_64-linux-gnu /opt/intel/oneapi/mkl/${MKL_ONEAPI_VERSION}/lib/intel64/libmkl_rt.so 50
# update-alternatives --install /usr/lib/x86_64-linux-gnu/libblas.so.3 libblas.so.3-x86_64-linux-gnu /opt/intel/oneapi/mkl/${MKL_ONEAPI_VERSION}/lib/intel64/libmkl_rt.so 50
# update-alternatives --install /usr/lib/x86_64-linux-gnu/liblapack.so liblapack.so-x86_64-linux-gnu /opt/intel/oneapi/mkl/${MKL_ONEAPI_VERSION}/lib/intel64/libmkl_rt.so 50
# update-alternatives --install /usr/lib/x86_64-linux-gnu/liblapack.so.3 liblapack.so.3-x86_64-linux-gnu /opt/intel/oneapi/mkl/${MKL_ONEAPI_VERSION}/lib/intel64/libmkl_rt.so 50
# # echo "/opt/intel/lib/intel64" > /etc/ld.so.conf.d/mkl.conf
# echo "/opt/intel/oneapi/mkl/latest/lib/intel64" >> /etc/ld.so.conf.d/mkl.conf
# ldconfig
# export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${INSTALLDIR}/intel/oneapi/mkl/${MKL_ONEAPI_VERSION}/lib/intel64/
# bash -c "source ${INSTALLDIR}/intel/oneapi/mkl/latest/env/vars.sh"
# ***********************
# Numpy, Scipy @MKL
# ***********************
update-alternatives --set gcc "/usr/bin/gcc-${GCC_VERSION_COMPATIBILITY}"
update-alternatives --set g++ "/usr/bin/g++-${GCC_VERSION_COMPATIBILITY}"
update-alternatives --set gfortran "/usr/bin/gfortran-${GCC_VERSION_COMPATIBILITY}"
# https://medium.com/@black_swan/using-mkl-to-boost-numpy-performance-on-ubuntu-f62781e63c38
# https://software.intel.com/content/www/us/en/develop/articles/numpyscipy-with-intel-mkl.html
# Python 2.7 Numpy
cd /tmp/
wget -q --retry-connrefused https://github.com/numpy/numpy/archive/v1.16.6.tar.gz
tar xzf v1.16.6.tar.gz
rm -f v1.16.6.tar.gz
cd numpy-1.16.6/
cp site.cfg.example site.cfg
echo "[mkl]" >> site.cfg
echo "library_dirs = /opt/intel/compilers_and_libraries_2020/linux/mkl/lib/intel64" >> site.cfg
echo "include_dirs = /opt/intel/compilers_and_libraries_2020/linux/mkl/include" >> site.cfg
echo "mkl_libs = mkl_rt" >> site.cfg
echo "lapack_libs =" >> site.cfg
python setup.py config build_clib build_ext install
cd ..
# python
# import numpy as np
# np.__config__.show()
rm -rf numpy-1.16.6/
# Python 2.7 SciPy
wget -q --retry-connrefused https://github.com/scipy/scipy/archive/v1.2.3.tar.gz
tar xzf v1.2.3.tar.gz
rm -f v1.2.3.tar.gz
cd scipy-1.2.3/
python setup.py config build_clib build_ext install
cd ..
# python
# import scipy as sp
# sp.__config__.show()
rm -rf scipy-1.2.3/
#python -m pip install -q -U scipy
# Python 3.6 Numpy
apt-get install -y -qq python3-pip
pip3 install cython
wget -q --retry-connrefused https://github.com/numpy/numpy/archive/v${NUMPY3_VERSION}.tar.gz
tar xzf v${NUMPY3_VERSION}.tar.gz
rm -f v${NUMPY3_VERSION}.tar.gz
cd numpy-${NUMPY3_VERSION}/
cp site.cfg.example site.cfg
echo "[mkl]" >> site.cfg
echo "library_dirs = /opt/intel/compilers_and_libraries_2020/linux/mkl/lib/intel64" >> site.cfg
echo "include_dirs = /opt/intel/compilers_and_libraries_2020/linux/mkl/include" >> site.cfg
echo "mkl_libs = mkl_rt" >> site.cfg
echo "lapack_libs =" >> site.cfg
python3 setup.py config build_clib build_ext install
cd ..
# python3
# import numpy as np
# np.__config__.show()
rm -rf numpy-${NUMPY3_VERSION}/
update-alternatives --set gcc "/usr/bin/gcc-${GCC_VERSION}"
update-alternatives --set g++ "/usr/bin/g++-${GCC_VERSION}"
update-alternatives --set gfortran "/usr/bin/gfortran-${GCC_VERSION}"
# ***********************
# Boost
# ***********************
apt-get install -y -qq build-essential python-dev python3-dev # python3-pip
#pip3 install -q numpy
mkdir -p ${INSTALLDIR}/Boost/build/
cd ${INSTALLDIR}/Boost/build/
wget -q --retry-connrefused https://boostorg.jfrog.io/artifactory/main/release/${BOOST_VERSIONdots}/source/boost_${BOOST_VERSION}.tar.gz
tar xzf boost_${BOOST_VERSION}.tar.gz
rm boost_${BOOST_VERSION}.tar.gz
cd boost_${BOOST_VERSION}/
# https://stackoverflow.com/questions/28830653/build-boost-with-multiple-python-versions
./bootstrap.sh --with-python=/usr/bin/python2
./b2 install --with-python -j ${J}
./bootstrap.sh --with-python=/usr/bin/python3 --with-python-root=/usr
./b2 --with-python --clean
./b2 install --with-python -j ${J}
./bootstrap.sh --without-libraries=chrono,container,context,contract,coroutine,exception,fiber,graph,graph_parallel,locale,log,math,mpi,random,serialization,stacktrace,type_erasure,wave
./b2 --with-python --clean
./b2 install -j ${J}
# dla Casacore:
ln /usr/local/lib/libboost_python27.so.${BOOST_VERSIONdots} /usr/local/lib/libboost_python.so
ln /usr/local/lib/libboost_python27.so.${BOOST_VERSIONdots} /usr/local/lib/libboost_python-py27.so
# dla AOFlaggera 2.15:
ln /usr/local/lib/libboost_python36.so.${BOOST_VERSIONdots} /usr/local/lib/libboost_python3.so
ln /usr/local/lib/libboost_numpy36.so.${BOOST_VERSIONdots} /usr/local/lib/libboost_numpy3.so
# dla LOFAR Beam:
ln /usr/local/lib/libboost_numpy27.so.${BOOST_VERSIONdots} /usr/local/lib/libboost_numpy.so
cd ../..
bash -c "rm -rf ${INSTALLDIR}/Boost/build/"
# ***********************
# HDF5
# ***********************
mkdir -p ${INSTALLDIR}/HDF5/build/
cd ${INSTALLDIR}/HDF5/build/
wget -q --retry-connrefused https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/hdf5-${HDF5_VERSION}/src/hdf5-${HDF5_VERSION}.tar.gz
tar xzf hdf5-${HDF5_VERSION}.tar.gz
rm hdf5-${HDF5_VERSION}.tar.gz
cd hdf5-${HDF5_VERSION}/
./configure --prefix=/usr/local/ --enable-cxx --enable-silent-rules #> /dev/null
make -j ${J} > /dev/null
make install > /dev/null
cd ../..
bash -c "rm -rf ${INSTALLDIR}/HDF5/build/"
# ***********************
# WCSlib (with pgsbox)
# ***********************
apt-get install -y -qq libcfitsio-dev fort77 flex
mkdir -p ${INSTALLDIR}/wcslib/build/
cd ${INSTALLDIR}/wcslib/build/
wget -q --retry-connrefused ftp://ftp.atnf.csiro.au/pub/software/wcslib/wcslib-${WCSLIB_VERSION}.tar.bz2
tar -xjf wcslib-${WCSLIB_VERSION}.tar.bz2
rm wcslib-${WCSLIB_VERSION}.tar.bz2
cd wcslib-${WCSLIB_VERSION}
./configure --prefix=${INSTALLDIR}/wcslib/ --without-pgplot
make -j ${J}
make install
cd ../..
bash -c "rm -rf ${INSTALLDIR}/wcslib/build/"
# ***********************
# FFTW
# ***********************
mkdir -p ${INSTALLDIR}/FFTW/build/
cd ${INSTALLDIR}/FFTW/build/
wget -q --retry-connrefused "http://www.fftw.org/fftw-${FFTW_VERSION}.tar.gz"
tar xzf fftw-${FFTW_VERSION}.tar.gz
rm -rf fftw-${FFTW_VERSION}.tar.gz
cd fftw-${FFTW_VERSION}
# double precision
./configure --prefix=/usr/ --disable-doc --enable-silent-rules --enable-shared --enable-threads --enable-sse2 --enable-avx --enable-avx2 --enable-avx512 > /dev/null
make -j${J} > /dev/null
make install > /dev/null
# single precision
make clean > /dev/null
./configure --prefix=/usr/ --disable-doc --enable-silent-rules --enable-shared --enable-threads --enable-sse2 --enable-avx --enable-avx2 --enable-avx512 --enable-float > /dev/null
make -j${J} > /dev/null
make install > /dev/null
cd ../..
bash -c "rm -rf ${INSTALLDIR}/FFTW/build/"
# ***********************
# pyFFTW
# ***********************
mkdir -p ${INSTALLDIR}/pyFFTW/build/
cd ${INSTALLDIR}/pyFFTW/build/
git clone https://github.com/pyFFTW/pyFFTW.git source/
cd source/
git checkout ${PYFFTW_VERSION}
mkdir -p ${INSTALLDIR}/pyFFTW/lib/python${PYTHON_VERSION}/site-packages/
export PYTHONPATH=${PYTHONPATH}:/opt/pyFFTW/lib/python2.7/site-packages
python ./setup.py install --prefix=${INSTALLDIR}/pyFFTW/
cd ../..
bash -c "rm -rf ${INSTALLDIR}/pyFFTW/{build,source}/"
# ***********************
# PyBDSF
# ***********************
update-alternatives --install /usr/bin/gfortran gfortran /usr/bin/gfortran-7 70 # https://github.com/lofar-astron/PyBDSF/issues/135
apt-get install -y -qq git python-pyfits python-matplotlib
pip install -q setuptools
pip install -q decorator==4.4.2
pip install -q ipython # 5.10.0
pip install -q astropy # 2.0.16
# pip install -q pyFFTW # 0.12.0
pip install git+https://github.com/lofar-astron/PyBDSF.git
# pip install --upgrade --force-reinstall git+https://github.com/lofar-astron/PyBDSF.git
update-alternatives --install /usr/bin/gfortran gfortran /usr/bin/gfortran-${GCC_VERSION} 80
# ***********************
# cmake
# ***********************
apt-get install -y -qq libssl-dev libncurses5-dev libncursesw5-dev libmd0
mkdir -p ${INSTALLDIR}/cmake/build/
cd ${INSTALLDIR}/cmake/build/
wget -q --retry-connrefused "https://github.com/Kitware/CMake/releases/download/v${CMAKE_VERSION}/cmake-${CMAKE_VERSION}.tar.gz"
tar xzf cmake-${CMAKE_VERSION}.tar.gz
rm cmake-${CMAKE_VERSION}.tar.gz
cd cmake-${CMAKE_VERSION}
CC=cc CXX=CC
./bootstrap --parallel=${J} -- -DCMAKE_BUILD_TYPE:STRING=Release > /dev/null
make -j ${J} > /dev/null
make install > /dev/null
cd ../..
bash -c "rm -rf ${INSTALLDIR}/cmake/build/"
hash -r
# ***********************
# SuperLU
# ***********************
mkdir -p ${INSTALLDIR}/SuperLU/build/
cd ${INSTALLDIR}/SuperLU/
git clone https://github.com/xiaoyeli/superlu.git src/
cd src/
#git checkout $SUPERLU_VERSION
cd ${INSTALLDIR}/SuperLU/build/
cmake ../src -DCMAKE_INSTALL_PREFIX=${INSTALLDIR}/SuperLU -DUSE_XSDK_DEFAULTS=TRUE -Denable_blaslib=OFF -DBLAS_LIBRARY=${INSTALLDIR}/OpenBLAS/lib/libopenblas.so -DCMAKE_CXX_FLAGS="-O3 -march=native -DNDEBUG" -Denable_tests=OFF -DBUILD_TESTING=OFF -DCMAKE_BUILD_TYPE=Release
make -j ${J}
make install
cd ../..
bash -c "rm -rf ${INSTALLDIR}/SuperLU/{build,src}"
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${INSTALLDIR}/SuperLU/lib/
# ***********************
# Armadillo
# ***********************
apt-get install -y -qq libarpack2-dev libatlas-base-dev # libopenblas-dev libsuperlu-dev libsuperlu5
mkdir -p ${INSTALLDIR}/armadillo/
cd ${INSTALLDIR}/armadillo/
wget -q --retry-connrefused "http://sourceforge.net/projects/arma/files/armadillo-${ARMADILLO_VERSION}.tar.xz"
tar xf armadillo-${ARMADILLO_VERSION}.tar.xz
rm armadillo-${ARMADILLO_VERSION}.tar.xz
cd armadillo-${ARMADILLO_VERSION}/
cmake -DCMAKE_INSTALL_PREFIX=${INSTALLDIR}/armadillo/ -Wno-dev -DCMAKE_CXX_FLAGS="-O3 -march=native -DNDEBUG" -DSuperLU_INCLUDE_DIR=${INSTALLDIR}/SuperLU/include/ -DSuperLU_LIBRARY=${INSTALLDIR}/SuperLU/lib/libsuperlu.so -DCMAKE_PREFIX_PATH="${INSTALLDIR}/OpenBLAS/;${INSTALLDIR}/intel/mkl/lib/intel64_lin/" .
make -j ${J}
make install > /dev/null
cd ../..
bash -c "rm -rf ${INSTALLDIR}/armadillo/armadillo-${ARMADILLO_VERSION}/"
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${INSTALLDIR}/armadillo/lib
# ***********************
# Casacore
# ***********************
update-alternatives --set gcc "/usr/bin/gcc-${GCC_VERSION_COMPATIBILITY}"
update-alternatives --set g++ "/usr/bin/g++-${GCC_VERSION_COMPATIBILITY}"
update-alternatives --set gfortran "/usr/bin/gfortran-${GCC_VERSION_COMPATIBILITY}"
apt-get install -y -qq flex bison libreadline-dev libncurses5-dev libncursesw5-dev # libopenblas-dev
mkdir -p ${INSTALLDIR}/casacore/build/
ls ${INSTALLDIR}/casacore/
cd ${INSTALLDIR}/casacore/
git clone https://github.com/casacore/casacore.git src/
if [ "${CASACORE_VERSION}" != "latest" ]; then cd ${INSTALLDIR}/casacore/src/ && git checkout tags/v${CASACORE_VERSION}; fi
mkdir -p ${INSTALLDIR}/casacore/data/
cd ${INSTALLDIR}/casacore/data/
wget -q --retry-connrefused ftp://ftp.astron.nl/outgoing/Measures/WSRT_Measures.ztar
tar xf WSRT_Measures.ztar
rm -f WSRT_Measures.ztar
cd ${INSTALLDIR}/casacore/build/
cmake -DCMAKE_INSTALL_PREFIX=${INSTALLDIR}/casacore/ -DDATA_DIR=${INSTALLDIR}/casacore/data/ -DBUILD_PYTHON=True -DENABLE_TABLELOCKING=OFF -DUSE_OPENMP=ON -DBUILD_PYTHON3=ON -DUSE_FFTW3=TRUE -DUSE_HDF5=ON -DHDF5_IS_PARALLEL=NO -DCXX11=YES -DCMAKE_BUILD_TYPE=Release -DCMAKE_CXX_FLAGS="-fsigned-char -O3 -DNDEBUG -march=native" -DWCSLIB_INCLUDE_DIR=${INSTALLDIR}/wcslib/include -DWCSLIB_LIBRARY=${INSTALLDIR}/wcslib/lib/libwcs.so -DBUILD_TESTING=OFF ../src/
make -j ${J}
make install
bash -c "strip ${INSTALLDIR}/casacore/{lib,bin}/* || true"
cd ../..
bash -c "rm -rf ${INSTALLDIR}/casacore/{build,src}/"
update-alternatives --set gcc "/usr/bin/gcc-${GCC_VERSION}"
update-alternatives --set g++ "/usr/bin/g++-${GCC_VERSION}"
update-alternatives --set gfortran "/usr/bin/gfortran-${GCC_VERSION}"
# ***********************
# Python Casacore
# ***********************
mkdir ${INSTALLDIR}/python-casacore/
cd ${INSTALLDIR}/python-casacore/
git clone https://github.com/casacore/python-casacore
if [ "$PYTHON_CASACORE_VERSION" != "latest" ]; then cd ${INSTALLDIR}/python-casacore/python-casacore/ && git checkout tags/v${PYTHON_CASACORE_VERSION}; fi
cd ${INSTALLDIR}/python-casacore/python-casacore/
./setup.py build_ext -I"${INSTALLDIR}/casacore/include/:${INSTALLDIR}/wcslib/include/" -L"${INSTALLDIR}/casacore/lib/:${INSTALLDIR}/wcslib/lib/"
mkdir -p ${INSTALLDIR}/python-casacore/lib/python${PYTHON_VERSION}/site-packages/
mkdir -p ${INSTALLDIR}/python-casacore/lib64/python${PYTHON_VERSION}/site-packages/
cd ${INSTALLDIR}/python-casacore/python-casacore/
./setup.py install --prefix=${INSTALLDIR}/python-casacore/
bash -c "find ${INSTALLDIR}/python-casacore/lib/ -name '*.so' | xargs strip || true"
cd ../..
bash -c "rm -rf ${INSTALLDIR}/python-casacore/python-casacore/"
# Run-time dependencies
# slurm-client installs libhdf5-100
apt-get install -y -qq libpng-dev libsigc++-2.0-dev libxml++2.6-2v5 libgslcblas0 openssh-client gettext-base rsync # slurm-client # ipython libxml2
# ***********************
# AOFlagger
# ***********************
update-alternatives --set gcc "/usr/bin/gcc-${GCC_VERSION_COMPATIBILITY}"
update-alternatives --set g++ "/usr/bin/g++-${GCC_VERSION_COMPATIBILITY}"
update-alternatives --set gfortran "/usr/bin/gfortran-${GCC_VERSION_COMPATIBILITY}"
# Run-time dependencies
apt-get install -y -qq --no-install-recommends libxml++2.6-2v5 libpng-tools libpython2.7
apt-get install -y -qq git g++ libxml++2.6-dev libpng-dev liblua5.3-dev graphviz libgsl-dev # libopenblas-dev doxygen
#apt-get install -y -qq --no-install-recommends libgtkmm-3.0-dev
mkdir -p ${INSTALLDIR}/aoflagger/build/
cd ${INSTALLDIR}/aoflagger/
# 2.15
wget --retry-connrefused "https://sourceforge.net/projects/aoflagger/files/aoflagger-${AOFLAGGER_VERSION}/aoflagger-${AOFLAGGER_VERSION}.tar.bz2"
tar xf aoflagger-${AOFLAGGER_VERSION}.tar.bz2
rm aoflagger-${AOFLAGGER_VERSION}.tar.bz2
cd ${INSTALLDIR}/aoflagger/build
cmake -DCASACORE_ROOT_DIR=${INSTALLDIR}/casacore/ -DBUILD_SHARED_LIBS=ON -DCMAKE_CXX_FLAGS="--std=c++11 -D_GLIBCXX_USE_CXX11_ABI=1 -O3 -march=native -DNDEBUG" -DCMAKE_INSTALL_PREFIX=${INSTALLDIR}/aoflagger ../aoflagger-2.15/
# 3.1
#apt-get install -y -qq pybind11-dev
#git clone https://gitlab.com/aroffringa/aoflagger.git src/
#cd src/
#git checkout tags/v${AOFLAGGER_VERSION}
#cd ../build/
#cmake -DCASACORE_ROOT_DIR=${INSTALLDIR}/casacore/ -DBUILD_SHARED_LIBS=ON -DCMAKE_CXX_FLAGS="--std=c++11 -W -Woverloaded-virtual -Wno-unknown-pragmas -D_GLIBCXX_USE_CXX11_ABI=1 -O3 -march=native -DNDEBUG" -DCMAKE_INSTALL_PREFIX=${INSTALLDIR}/aoflagger/ ../src/
make -j ${J}
make install
cd ../..
bash -c "rm -rf ${INSTALLDIR}/aoflagger/{build,aoflagger-2.15}/"
#bash -c "rm -rf ${INSTALLDIR}/aoflagger/{build,src}/" # 3.0
bash -c "strip ${INSTALLDIR}/aoflagger/{lib,bin}/* || true"
update-alternatives --set gcc "/usr/bin/gcc-${GCC_VERSION}"
update-alternatives --set g++ "/usr/bin/g++-${GCC_VERSION}"
update-alternatives --set gfortran "/usr/bin/gfortran-${GCC_VERSION}"
# ***********************
# DYSCO
# ***********************
#apt-get install -y -qq libgsl-dev
mkdir ${INSTALLDIR}/dysco/
cd ${INSTALLDIR}/dysco/
git clone https://github.com/aroffringa/dysco
cd ${INSTALLDIR}/dysco/dysco/
mkdir build/
cd build/
cmake -DCMAKE_INSTALL_PREFIX=${INSTALLDIR}/dysco/ -DCMAKE_CXX_FLAGS="--std=c++11 -O3 -DNDEBUG -march=native" -DCMAKE_BUILD_TYPE=Release -DCASACORE_ROOT_DIR=${INSTALLDIR}/casacore/ ../
make -j ${J}
make install
cd ../..
cp ${INSTALLDIR}/dysco/dysco/build/decompress ${INSTALLDIR}/dysco/bin/decompress # https://github.com/aroffringa/dysco/issues/12#issuecomment-773134161
bash -c "rm -rf ${INSTALLDIR}/dysco/dysco/"
# ***********************
# LOFAR
# ***********************
apt-get install -y -qq --no-install-recommends subversion bison flex blitz++ python-dev libxml2-dev libpng-dev libunittest++-dev libxml++2.6-dev binutils-dev # libopenblas-dev libhdf5-dev
apt-get install -y -qq python-psycopg2 libpqxx-dev python-qpid # libarmadillo-dev gfortran
mkdir -p ${INSTALLDIR}/lofar/build/${LOFAR_BUILDVARIANT}/
cd ${INSTALLDIR}/lofar/
svn --non-interactive -q co -r ${LOFAR_REVISION} -N https://svn.astron.nl/LOFAR/${LOFAR_BRANCH} src/
svn --non-interactive -q up src/CMake/
cd ${INSTALLDIR}/lofar/build/${LOFAR_BUILDVARIANT}/
cmake -DCMAKE_PREFIX_PATH="${INSTALLDIR}/armadillo/" -DBUILD_TESTING=OFF -DCMAKE_INSTALL_PREFIX=${INSTALLDIR}/lofar/ -DCASACORE_ROOT_DIR=${INSTALLDIR}/casacore/ -DAOFLAGGER_ROOT_DIR=${INSTALLDIR}/aoflagger/ -DUSE_OPENMP=True -DBUILD_PACKAGES="Pipeline MS" -DUSE_LOG4CPLUS=OFF -DCMAKE_CXX_FLAGS="-O3 -march=native -DNDEBUG" -Wno-dev ${INSTALLDIR}/lofar/src/ # -DBUILD_PACKAGES="ParmDB pyparmdb Pipeline MS"
make -j ${J}
#sed -i '29,31d' include/ApplCommon/PosixTime.h
make install
bash -c "mkdir -p ${INSTALLDIR}/lofar/var/{log,run}"
bash -c "chmod a+rwx ${INSTALLDIR}/lofar/var/{log,run}"
bash -c "strip ${INSTALLDIR}/lofar/bin/* || true" > /dev/null
bash -c "rm -rf ${INSTALLDIR}/lofar/{build,src}"
# ***********************
# LOFAR Beam
# ***********************
mkdir -p ${INSTALLDIR}/LOFARBeam/build/
cd ${INSTALLDIR}/LOFARBeam/build/
git clone https://github.com/lofar-astron/LOFARBeam.git src/
cmake -DCMAKE_INSTALL_PREFIX=${INSTALLDIR}/LOFARBeam/ -DCASACORE_ROOT_DIR=${INSTALLDIR}/casacore/ -DCMAKE_CXX_FLAGS="-O3 -march=native -DNDEBUG" -DCMAKE_BUILD_TYPE=Release src/
make -j ${J}
make install
bash -c "rm -rf ${INSTALLDIR}/LOFARBeam/{build,src}/"
export PYTHONPATH=${PYTHONPATH}:${INSTALLDIR}/LOFARBeam/lib/python2.7/site-packages
# ***********************
# IDG
# ***********************
mkdir -p ${INSTALLDIR}/IDG/build/
cd ${INSTALLDIR}/IDG/build/
git clone https://gitlab.com/astron-idg/idg.git src/
cmake -DCMAKE_PREFIX_PATH="/usr/local/cuda-11.6/lib64/" -DCMAKE_INSTALL_PREFIX=/usr/ -Wno-dev -DCMAKE_CXX_FLAGS="-O3 -march=native -DNDEBUG" -DCMAKE_BUILD_TYPE=Release -DBUILD_WITH_MKL=ON -DBUILD_LIB_CUDA=ON src/
make -j ${J}
make install
cd ../..
bash -c "rm -rf ${INSTALLDIR}/IDG/{build,src}/"
# ***********************
# EveryBeam
# ***********************
mkdir -p ${INSTALLDIR}/EveryBeam/build/
cd ${INSTALLDIR}/EveryBeam/build/
git clone https://git.astron.nl/RD/EveryBeam.git src/
# cd src/
# git checkout tags/v${EVERYBEAM_VERSION}
# cd ..
cmake -DCMAKE_INSTALL_PREFIX=${INSTALLDIR}/EveryBeam/ -DCASACORE_ROOT_DIR=${INSTALLDIR}/casacore/ -DCMAKE_CXX_FLAGS="-O3 -march=native -DNDEBUG" -DCMAKE_BUILD_TYPE=Release src/
make -j ${J}
make install
cd ../..
bash -c "rm -rf ${INSTALLDIR}/EveryBeam/{build,src}/"
bash -c "strip ${INSTALLDIR}/EveryBeam/lib/* || true"
export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${INSTALLDIR}/EveryBeam/lib/
# ***********************
# DP3
# ***********************
apt-get install -y -qq --no-install-recommends python3-dev # libarmadillo-dev python3-numpy
mkdir -p ${INSTALLDIR}/lofar/build/
cd ${INSTALLDIR}/lofar/
rm -rf src/
git clone https://github.com/lofar-astron/DP3.git src/
cd src/
git checkout tags/v${DP3_VERSION}
#git checkout ${DP3_VERSION}
cd ../build/
cmake -DCMAKE_PREFIX_PATH="${INSTALLDIR}/lofar/;${INSTALLDIR}/armadillo/;${INSTALLDIR}/aoflagger/;${INSTALLDIR}/LOFARBeam/;${INSTALLDIR}/intel/mkl/lib/intel64_lin/" -DCMAKE_INSTALL_PREFIX=${INSTALLDIR}/lofar/ -Wno-dev -DCASACORE_ROOT_DIR=${INSTALLDIR}/casacore/ -DCMAKE_CXX_FLAGS="-O3 -march=native -DNDEBUG" ${INSTALLDIR}/lofar/src/
make -j ${J}
make install
cd ../..
bash -c "rm -rf ${INSTALLDIR}/lofar/{build,src,CMakeFiles}"
bash -c "strip ${INSTALLDIR}/lofar/bin/* || true" > /dev/null
ln -s ${INSTALLDIR}/lofar/bin/DPPP ${INSTALLDIR}/lofar/bin/NDPPP
#ln -s ${INSTALLDIR}/DPPP/bin/makesourcedb ${INSTALLDIR}/lofar/bin/makesourcedb
# z: https://www.astron.nl/lofarwiki/doku.php?id=public:user_software:ubuntu_14_4
# ***********************
# NumExpr
# ***********************
# for tables
mkdir -p ${INSTALLDIR}/NumExpr/build/
cd ${INSTALLDIR}/NumExpr/build/
git clone -b v${NUMEXPR_VERSION} https://github.com/pydata/numexpr.git source/
cd source/
# https://github.com/pydata/numexpr#enable-intel-mkl-support
touch site.cfg
echo "[mkl]" >> site.cfg
echo "library_dirs = /opt/intel/compilers_and_libraries_2020/linux/mkl/lib/intel64" >> site.cfg
echo "include_dirs = /opt/intel/compilers_and_libraries_2020/linux/mkl/include" >> site.cfg
echo "mkl_libs = mkl_rt" >> site.cfg
python setup.py build install
cd ../..
bash -c "rm -rf ${INSTALLDIR}/NumExpr/{build,source}/"
# ***********************
# LoSoTo
# ***********************
# https://github.com/lofar-astron/prefactor/issues/273#issuecomment-668551578
# pip install tables==3.5.2
pip install tables
mkdir -p ${INSTALLDIR}/LoSoTo/build/
cd ${INSTALLDIR}/LoSoTo/build/
git clone https://github.com/revoltek/losoto.git source/
cd source/
git checkout c8fbd61 # https://github.com/revoltek/losoto/issues/103
mkdir -p ${INSTALLDIR}/LoSoTo/lib/python${PYTHON_VERSION}/site-packages/
python ./setup.py install --prefix=${INSTALLDIR}/LoSoTo/
cd ../..
bash -c "rm -rf ${INSTALLDIR}/LoSoTo/{build,source}/"
# ***********************
# WSClean
# ***********************
mkdir -p ${INSTALLDIR}/WSClean/build/
cd ${INSTALLDIR}/WSClean/
git clone https://gitlab.com/aroffringa/wsclean.git src/
cd src/
# git checkout tags/v${WSCLEAN_VERSION}
cd ../build/
cmake -DCMAKE_PREFIX_PATH="${INSTALLDIR}/EveryBeam/;/usr/local/idg/;${INSTALLDIR}/intel/mkl/lib/intel64_lin/" -DCMAKE_INSTALL_PREFIX=${INSTALLDIR}/WSClean/ -DCASACORE_ROOT_DIR=${INSTALLDIR}/casacore/ -DCMAKE_CXX_FLAGS="-O3 -march=native -DNDEBUG" -DCMAKE_BUILD_TYPE=Release -DMPI_CXX_SKIP_MPICXX=ON -Wno-dev ${INSTALLDIR}/WSClean/src/
make -j${J}
make install
cd ../..
bash -c "rm -rf ${INSTALLDIR}/WSClean/{build,src}/"
bash -c "strip ${INSTALLDIR}/WSClean/{bin,lib}/* || true"
# ***********************
# LSMTool
# ***********************
pip install pytest-runner==5.2
mkdir -p ${INSTALLDIR}/LSMTool/build/
cd ${INSTALLDIR}/LSMTool/build/
git clone https://github.com/darafferty/LSMTool.git source/
cd source/
mkdir -p ${INSTALLDIR}/LSMTool/lib/python${PYTHON_VERSION}/site-packages/
python ./setup.py install --prefix=${INSTALLDIR}/LSMTool/
bash -c "rm -rf ${INSTALLDIR}/LSMTool/{build,source}/"
# ***********************
# RMextract
# ***********************
mkdir -p ${INSTALLDIR}/RMextract-${RMEXTRACT_VERSION}/build/
cd ${INSTALLDIR}/RMextract-${RMEXTRACT_VERSION}/build/
git clone https://github.com/maaijke/RMextract.git source/
cd source/
mkdir -p ${INSTALLDIR}/RMextract-${RMEXTRACT_VERSION}/lib/python${PYTHON_VERSION}/site-packages/
python ./setup.py build --add-lofar-utils
python ./setup.py install --add-lofar-utils --prefix=${INSTALLDIR}/RMextract-${RMEXTRACT_VERSION}/
cd ../..
bash -c "rm -rf ${INSTALLDIR}/RMextract-${RMEXTRACT_VERSION}/build/"
pip list --format=columns
pip3 list --format=columns
apt-get purge -y -qq apt-utils graphviz doxygen build-essential python-all-dev git
apt-get purge -y -qq subversion gfortran bison flex libblitz0-dev python-pip python3-pip pkg-config
#apt-get purge -y -qq gcc-${GCC_VERSION_COMPATIBILITY} g++-${GCC_VERSION_COMPATIBILITY} gfortran-${GCC_VERSION_COMPATIBILITY} fort77 software-properties-common
apt-get purge -y -qq libssl-dev libncurses5-dev libncursesw5-dev libmd0
apt-get purge -y -qq libsuperlu-dev unattended-upgrades* distro-info-data* python3-software-properties* make*
#apt-get purge -y -qq cpp-9* cron* dirmngr* dpkg-dev* f2c* fakeroot* gfortran-7* gir1.2-glib-2.0* gir1.2-harfbuzz-0.0* git-man* gnupg* gnupg-l10n* gnupg-utils* gpg* gpg-agent* gpg-wks-client* gpg-wks-server* gpgconf* gpgsm* icu-devtools* intel-comp-l-all-vars-19.1.1-217* iso-codes* less* libalgorithm-diff-perl* libalgorithm-diff-xs-perl* libalgorithm-merge-perl* libann0* libapr1* libaprutil1* libapt-inst2.0* libasan5* libassuan0* libbison-dev* libcdt5* libcgraph6* libclang1-6.0* libdpkg-perl* libelf1* liberror-perl* libf2c2* libf2c2-dev* libfakeroot* libfile-fcntllock-perl* libfl2* libgcc-10-dev* libgd3* libgfortran-7-dev* libgfortran-10-dev* libgfortran5* libgirepository-1.0-1* libglib2.0-bin* libglib2.0-dev-bin* libgraphite2-dev* libgts-0.7-5* libgts-bin* libgvc6* libgvpr2* libharfbuzz-gobject0* libharfbuzz-icu0* libicu-le-hb0* libiculx60* libksba8* liblab-gamut1* libllvm6.0* liblocale-gettext-perl* libnpth0* libpathplan4* libpcre16-3* libpcre3-dev* libpcre32-3* libpcrecpp0v5* libpq-dev* libpqxx-4.0v5* libpython-all-dev* libserf-1-1* libsigsegv2* libstdc++-9-dev* libsvn1* libubsan1* libxapian30* libxaw7* libxmu6* libxpm4* lsb-release* m4* patch* pinentry-curses* powermgmt-base* python-all* python-apt-common* python-asn1crypto* python-cffi-backend* python-crypto* python-cryptography* python-dbus* python-gi* python-idna* python-ipaddress* python-keyring* python-keyrings.alt* python-pip-whl* python-secretstorage* python-wheel* python-xdg* python3-apt* python3-asn1crypto* python3-cffi-backend* python3-crypto* python3-cryptography* python3-dbus* python3-gi* python3-idna* python3-keyring* python3-keyrings.alt* python3-pkg-resources* python3-secretstorage* python3-setuptools* python3-six* python3-wheel* python3-xdg*
#apt-get autoremove -y --purge !(intel-*)
apt-get purge -y -qq gcc-${GCC_VERSION} g++-${GCC_VERSION} gfortran-${GCC_VERSION}
rm -rf /usr/local/share/cmake-3.23/
rm -rf /var/lib/apt/lists/*
# rm -rf /usr/local/cuda-11.6/
rm -rf /usr/lib/gcc/
rm -f /usr/local/bin/ccmake
rm -f /usr/local/bin/cmake
echo "export HDF5_USE_FILE_LOCKING=FALSE" >> $SINGULARITY_ENVIRONMENT # https://github.com/lofar-astron/prefactor/issues/273#issuecomment-655576650
touch /opt/lofar/.casarc
echo "measures.directory: /opt/casacore/data" >> /opt/lofar/.casarc
%labels
Author: akurek ( at ) nac.oa.uj.edu.pl (PL611 station)
%help
This container has everything one needs to run Prefactor 3.2. It is optimised for speed and ease of use.