From b49ec5adb9d3e065a222f66ef24a04d6e03c5bc7 Mon Sep 17 00:00:00 2001 From: Pherkel Date: Thu, 23 Nov 2023 19:34:06 +0100 Subject: [PATCH] kubernetes training on optocycle cluster --- Dockerfile | 37 + config.docker.yaml | 45 + pod.yaml | 70 ++ poetry.lock | 1945 +++++++++++++++++++++++++------------------- pvc.yaml | 14 + pyproject.toml | 7 +- requirements.txt | 89 +- 7 files changed, 1331 insertions(+), 876 deletions(-) create mode 100644 Dockerfile create mode 100644 config.docker.yaml create mode 100644 pod.yaml create mode 100644 pvc.yaml diff --git a/Dockerfile b/Dockerfile new file mode 100644 index 0000000..b732c98 --- /dev/null +++ b/Dockerfile @@ -0,0 +1,37 @@ +FROM pytorch/pytorch:2.1.1-cuda12.1-cudnn8-runtime + +ARG USERNAME=dev +ARG USER_UID=1000 +ARG USER_GID=$USER_UID + +# set up user with uid 1000 for vscode devcontainer +RUN groupadd --gid $USER_GID $USERNAME \ + && useradd --uid $USER_UID --gid $USER_GID -m $USERNAME \ + && apt-get update \ + && apt-get install -y sudo \ + && echo $USERNAME ALL=\(root\) NOPASSWD:ALL > /etc/sudoers.d/$USERNAME \ + && chmod 0440 /etc/sudoers.d/$USERNAME + + +RUN apt-get update -y && \ + DEBIAN_FRONTEND=noninteractive apt-get install -y \ + # dev dependencies + curl vim nano tar iputils-ping screen ffmpeg\ + # kenlm dependencies + build-essential libboost-all-dev cmake zlib1g-dev libbz2-dev liblzma-dev && \ + apt-get clean + +WORKDIR /app +COPY requirements.txt ./ +RUN pip install -r requirements.txt + +# set the default user +USER $USERNAME + +# copy the rest of the files +COPY swr2_asr ./swr2_asr +COPY data ./data +COPY config.* ./ + +# just keep the container alive +ENTRYPOINT ["tail", "-f", "/dev/null"] diff --git a/config.docker.yaml b/config.docker.yaml new file mode 100644 index 0000000..51e30f4 --- /dev/null +++ b/config.docker.yaml @@ -0,0 +1,45 @@ +dataset: + download: True + dataset_root_path: "data/datasets" # files will be downloaded into this dir + language_name: "mls_german_opus" + limited_supervision: False # set to True if you want to use limited supervision + dataset_percentage: 1 # percentage of dataset to use (1.0 = 100%) + shuffle: True + +model: + n_cnn_layers: 3 + n_rnn_layers: 7 + rnn_dim: 512 + n_feats: 256 # number of mel features + stride: 2 + dropout: 0.2 # recommended to be around 0.4 for smaller datasets, 0.1 for really large datasets + +tokenizer: + tokenizer_path: "data/tokenizers/char_tokenizer_german.json" + +decoder: + type: "greedy" # greedy, or lm (beam search) + + lm: # config for lm decoder + language_model_path: "data" # path where model and supplementary files are stored + language: "german" + n_gram: 5 # n-gram size of the language model, 3 or 5 + beam_size: 500 + beam_threshold: 150 + n_best: 1 + lm_weight: 1 + word_score: 1 + +training: + learning_rate: 0.0005 + batch_size: 32 # recommended to maximum number that fits on the GPU (batch size of 32 fits on a 12GB GPU) + epochs: 100 + eval_every_n: 5 # evaluate every n epochs + num_workers: 4 # number of workers for dataloader + +checkpoints: # use "~" to disable saving/loading + model_load_path: ~ # path to load model from + model_save_path: "data/runs/01/epoch" # path to save model to + +inference: + model_load_path: "data/epoch67" # path to load model from diff --git a/pod.yaml b/pod.yaml new file mode 100644 index 0000000..a415c04 --- /dev/null +++ b/pod.yaml @@ -0,0 +1,70 @@ +# a pod for testing the torch implementation of nms on a gpu +apiVersion: v1 +kind: Pod +metadata: + name: swr-asr + labels: + app: swr-asr +spec: + initContainers: + - name: swr-asr-init + image: pherkel/swr2-asr + imagePullPolicy: Always + command: ["/bin/sh", "-c", "cp -R /app/* /tmp/"] + volumeMounts: + - name: swr-asr-vol + mountPath: /tmp + + securityContext: + allowPrivilegeEscalation: false + capabilities: + drop: ["ALL"] + + + containers: + - name: swr-asr + image: pherkel/swr2-asr + imagePullPolicy: Always + # command: ["/bin/bash", "-c", "while sleep 1000; do :; done"] + + volumeMounts: + - name: swr-asr-vol + mountPath: /app + + # workaround for increasing worker shared memory size + - name: shm-vol + mountPath: /dev/shm + + resources: + requests: + nvidia.com/gpu: "1" + memory: "8Gi" + cpu: "4" + limits: + nvidia.com/gpu: "1" + memory: "8Gi" + cpu: "4" + + securityContext: + allowPrivilegeEscalation: false + capabilities: + drop: ["ALL"] + + volumes: + - name: swr-asr-vol + persistentVolumeClaim: + claimName: swr-asr-vol + - name: shm-vol + emptyDir: + medium: Memory + + securityContext: + runAsNonRoot: true + runAsUser: 1000 + runAsGroup: 1000 + fsGroup: 1000 + seccompProfile: + type: RuntimeDefault + + nodeSelector: + optocycle.com/infrastructure-provider: ocs diff --git a/poetry.lock b/poetry.lock index 353f5c3..3b137ef 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,15 @@ -# This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.7.1 and should not be 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diff --git a/requirements.txt b/requirements.txt index efe4ddb..411a116 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,70 +1,87 @@ +aiofiles==23.2.1 appnope==0.1.3 -astroid==2.15.6 -asttokens==2.4.0 -backcall==0.2.0 -black==23.9.1 +argon2-cffi==23.1.0 +argon2-cffi-bindings==21.2.0 +astroid==2.15.8 +asttokens==2.4.1 +black==23.11.0 +certifi==2023.11.17 +cffi==1.16.0 +charset-normalizer==3.3.2 click==8.1.7 -comm==0.1.4 -contourpy==1.1.1 -cycler==0.11.0 +comm==0.2.0 +contourpy==1.2.0 +cycler==0.12.1 debugpy==1.8.0 decorator==5.1.1 dill==0.3.7 -exceptiongroup==1.1.3 -executing==1.2.0 -filelock==3.12.4 -fonttools==4.42.1 -ipykernel==6.25.2 -ipython==8.15.0 +exceptiongroup==1.2.0 +executing==2.0.1 +filelock==3.13.1 +flashlight==0.1.1 +flashlight-text==0.0.4 +fonttools==4.45.0 +fsspec==2023.10.0 +httptools==0.6.1 +idna==3.4 +ipykernel==6.27.0 +ipython==8.17.2 isort==5.12.0 -jedi==0.19.0 +jedi==0.19.1 Jinja2==3.1.2 -jupyter_client==8.3.1 -jupyter_core==5.3.1 +jupyter_client==8.6.0 +jupyter_core==5.5.0 kiwisolver==1.4.5 lazy-object-proxy==1.9.0 MarkupSafe==2.1.3 -matplotlib==3.8.0 +matplotlib==3.8.2 matplotlib-inline==0.1.6 mccabe==0.7.0 mido==1.3.0 +minio==7.2.0 mpmath==1.3.0 mypy-extensions==1.0.0 nest-asyncio==1.5.8 -networkx==3.1 -numpy==1.25.2 -packaging==23.1 -pandas==2.1.0 +networkx==3.2.1 +numpy==1.26.2 +packaging==23.2 +pandas==2.1.3 parso==0.8.3 pathspec==0.11.2 pexpect==4.8.0 -pickleshare==0.7.5 -Pillow==10.0.1 -platformdirs==3.10.0 -prompt-toolkit==3.0.39 -psutil==5.9.5 +Pillow==10.1.0 +platformdirs==4.0.0 +prompt-toolkit==3.0.41 +psutil==5.9.6 ptyprocess==0.7.0 pure-eval==0.2.2 -Pygments==2.16.1 -pylint==2.17.5 +pycparser==2.21 +pycryptodome==3.19.0 +Pygments==2.17.2 +pylint==2.17.7 pyparsing==3.1.1 python-dateutil==2.8.2 pytz==2023.3.post1 PyYAML==6.0.1 pyzmq==25.1.1 +requests==2.31.0 ruff==0.0.285 -setuptools-scm==7.1.0 +sanic==0.7.0 six==1.16.0 -stack-data==0.6.2 +stack-data==0.6.3 sympy==1.12 tomli==2.0.1 -tomlkit==0.12.1 -torch==2.0.0 -torchaudio==2.0.1 +tomlkit==0.12.3 +torch==2.1.1 +torchaudio==2.1.1 tornado==6.3.3 tqdm==4.66.1 -traitlets==5.10.0 +traitlets==5.13.0 typing_extensions==4.8.0 tzdata==2023.3 -wcwidth==0.2.6 -wrapt==1.15.0 +ujson==5.8.0 +urllib3==2.1.0 +uvloop==0.19.0 +wcwidth==0.2.12 +websockets==12.0 +wrapt==1.16.0