Releases: AllenInstitute/AllenSDK
Releases · AllenInstitute/AllenSDK
v2.13.6
v2.13.5
What's Changed
- Speed up loading of stimulus presentations table from NWB 2.0 files by @jsiegle in #2313
- Issue/2304/genotype/is/none by @danielsf in #2318
- Fix monitor delay bug by @sgratiy in #2316
- moves data object base classes out of behavior by @aamster in #2335
- ticket/nnnn/sync/stim/aligner by @danielsf in #2354
- Create VBN EyeTracking data object by @sgratiy in #2355
- Probes data object by @aamster in #2356
- Adds optotagging table data object by @aamster in #2359
- ticket-2341: Create VBN Licks data object by @morriscb in #2360
- Makes Presentations class compatible with VBN by @aamster in #2361
- Add ability to write stimulus templates to NWB for VBN by @aamster in #2362
- add behavior ecephys metadata by @aamster in #2363
- Ticket/2357/multi/stim/timestamps by @aamster in #2364
- ticket/2337/multi/stim/running/speed by @danielsf in #2368
- Behavior ecephys session by @aamster in #2367
- Ticket/2370/lick/timestamps by @danielsf in #2373
- Vbn nwb writer by @aamster in #2372
- Ticket/2375/eye/tracking/timestamps by @danielsf in #2378
- ticket/nnnn/get units/bug by @danielsf in #2381
- Removes unnecessary validation on non-behavior files by @aamster in #2389
- Fix reporter line by @sgratiy in #2390
- ticket/2383/lick/timestamps by @danielsf in #2392
- Makes sure timestamps and eye tracking frames are aligned by @aamster in #2397
- Removes dependency on hardcoded acronym-id map and strips subregion from acronym by @aamster in #2401
- Fixes issue with nan manual_structure_acronym by @aamster in #2404
- Update further documentation link by @aamster in #2398
- ticket/ecephys/33a/metadata/writer by @danielsf in #2407
- Ticket/2412/read/pickle/file by @danielsf in #2426
- Create VBN project cache by @sgratiy in #2419
- Ticket/2433/vbo/bug by @danielsf in #2434
- Ticket/2400/vbn/input/jsons by @danielsf in #2438
- Ticket/2428/filter sessions by @aamster in #2430
- Ticket/2416/date/of/acq by @danielsf in #2440
- Ticket/2432/rename/local index by @danielsf in #2444
- Ticket/2443/missing/sessions by @danielsf in #2449
- Ticket/2450/supplemental/columns by @danielsf in #2451
- Ticket/2453/bad/mouse by @danielsf in #2455
- Memory leak by @aamster in #2465
- Ticket/2454/rename/vbn/fields by @danielsf in #2462
- tolist() can be expensive; use list comprehension instead which is fas… by @aamster in #2468
- Vbn 2022 dev by @danielsf in #2435
- Ticket/2467/trials/times by @danielsf in #2469
- Ticket/2371/vbo/access by @danielsf in #2474
- Vbn/access by @danielsf in #2476
- increase lower bound on jinja2 by @aamster in #2481
- ticket-2464: Modify loading projection image to get correct data from lims. by @morriscb in #2479
- Docstring/type hint improvements to VisualBehaviorNeuropixelsProjectCache by @aamster in #2482
- BehaviorSession.from_lims now supports checking if eye tracking metad… by @aamster in #2483
- reads session type from pkl file instead of from mtrain by @aamster in #2488
- adds left_right_ccf_coordinate to project level units table by @aamster in #2489
- after pynwb update from 2.01 to 2.1.0, the defaults on the electrode … by @aamster in #2493
- fix test by @aamster in #2494
- Adds support for VBN trials table having different name for 'change_time' by @aamster in #2495
- rename autorewarded to auto_rewarded in rewards table by @aamster in #2498
- Ticket/2470/vbn/documentation by @danielsf in #2471
- rc/2.13.5 by @morriscb in #2309
Full Changelog: v2.13.4...2.16.0
v2.13.2
- Fixes bug that caused file paths on windows machines to be incorrect in Visual behavior user-facing classes
- Updates to support MESO.2
- Loosens/updates required versions for several dependencies
- Updates in order to generate valid NWB files for Neuropixels Visual Coding data collected between 2019 and 2021
v2.13.0
v2.12.3
v2.12.2
v2.12.1
v2.12.0
Released 2021-08-11
- Added ability to specify a static cache directory (use_static_cache=True) to instantiate VisualBehaviorOphysProjectCache.from_local_cache()
- Added 'experience_level', 'passive' and 'image_set' columns to ophys_experiments_table
- Added 'ophys_cells_table' metadata table to track the relationship between ophys_experiment_id and cell_specimen_id