v1.0.2

What's New - 1.0.2 (October 14, 2019)

The 1.0.2 release brings support for the Allen Brain Observatory - Visual Coding Neuropixels dataset! This dataset is a large-scale extracellular electrophysiological survey of mouse subcortical visual cortical regions using high-density neuropixels probes.

To get started with these data, see the Visual Coding - Neuropixels section

We have implemented new and improved eye-tracking methods based on Deep Lab Cut. These eye tracking results can be accessed for existing brain observatory experiments by calling get_ophys_eye_gaze_data on a BrainObservatoryCache object. For Neuropixels sessions, you can access these data by calling get_eye_tracking_data on an EcephysSession object.

With this release, we are no longer supporting Python 2.

Release 0.16.3

Bug Fixes

• #660 and #659 no longer use scipy.misc.imresize, which has been removed from scipy
• #661 miscellaneous fixes to example notebooks. Affected notebooks:
  • https://allensdk.readthedocs.io/en/latest/_static/examples/nb/cell_specimen_mapping.html
  • https://allensdk.readthedocs.io/en/latest/_static/examples/nb/pulse_stimulus.html
  • https://allensdk.readthedocs.io/en/latest/_static/examples/nb/receptive_fields.html

Release 0.16.2

Added

• #549 Transforms for tissuecyte registration accessible from allensdk
• #568 Release instructions for future maintainers.

Changed

• #582 Documentation builds from a yml config in python 3.7

Bug Fixes

• #523 pip no longer fails on new conda environment because of tables

Release 0.16.1

Merge pull request #429 from AllenInstitute/docs_typo

fixing typo in docs