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NEWS.txt
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NEWS.txt
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* Selfing bug?
* GenderBisex?
v0.3.0 2019-03-??
IMPROVEMENTS
* Added functionality to allow or avoid repeated matings
(AllowRepeatedMatings, [Yes/No]).
* Mating plan has now additional info (the number of contributions per parent,
the number of repeated matings/crosses and selfing status).
* Specifications are now more thoroughly tested. Also, when a specification is
set to No (inactivated) this is printed on screen.
* Specifications Limit{Male,Female}Contributions have been removed - you now only
have to specify Limit{Male,Female}Contributions{Min,Max} to activate limits.
* Sensible defaults are invoked for the number of parents and matings/crosses
when these are not given. This is required for some specific uses, for example,
to optimise a core diversity set.
* Added an example that optimises a core diversity set.
* Input data without variation is now allowed - a NOTE is given (instead of an ERROR).
* Targets beyond limits are now reset to limits - a NOTE is given (instead of an ERROR).
* Targets.txt file is now always produced - for any optimisation mode.
* Improved stability with some edge cases.
* Added average coancestry of a contributor with the contributors in the
contributors file (in addition to coancestry with all candidates).
* Added a note about AlphaMate flexibility to the manual.
BUGFIXES
* In some edge cases written mating plan was wrong.
* In some edge cases with limited specifications an error was thrown needlessly.
* AlphaMate crashed when only selection criterion targets or coancestry targets
were given. Now it properly maximises gain for given coancestry targets and
minimises coancestry for given selection criterion targets - all via target
degrees.
v0.2.0 2018-11-02
IMPROVEMENTS
* Faster optimisation via parallelisation. The animal example is about 7x faster
with 8 cores.
* Faster data input/preparation. The animal example is ~3x faster. Larger cases
will see more gain.
* Infrastructure for single or double precision mode to further speed-up large cases.
BUGFIXES
* Now we properly set random number generator seed value for all run cases.
v0.1.1 2018-07-03
IMPROVEMENTS
* Improved handling of specifications LimitContributions and EqualizeContributions
when gender is given, i.e., when limits are used for one gender and equalizing
for the other gender.
* Consolidated which optimisation modes are turned on with provided targets
(criterion, coancestry, and/or inbreeding).
BUGFIXES
* Handle cases when the number of matings/crosses is larger than the number of
individuals.
v0.1.0 2018-01-21
* First public version