fix(deps): update dependency astropy to v6 (v0.8.x) #128
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This PR contains the following updates:
^5.0->^5.0 || ^6.0.0Release Notes
astropy/astropy (astropy)
v6.0.0Compare Source
==========================
New Features
astropy.config
^^^^^^^^^^^^^^
ConfigNamespace.help()method provides a convenient way to getinformation about configuration items. [#13499]
astropy.coordinates
^^^^^^^^^^^^^^^^^^^
Support has been added to create geodetic representations not just for existing ellipsoids
from ERFA, but also with explicitly provided values, by defining a subclass of
BaseGeodeticRepresentationwith the equatorial radius and flattening assigned to_equatorial_radiusand_flatteningattributes. [#14763]Add
BaseBodycentricRepresentation, a new spheroidal representation for bodycentriclatitudes and longitudes. [#14851]
Support Numpy broadcasting over frame data and attributes. [#15121]
astropy.cosmology
^^^^^^^^^^^^^^^^^
Registered a
latexwriter for exporting a Cosmology object to a LaTex table. [#14701]Added argument
renameto Cosmology's I/O, allowing for input and output symbols tobe renamed. [#14780]
All non-abstract Cosmology subclasses are now automatically registered to work with
Astropy's YAML serialization. [#14979]
Cosmology I/O now auto-identifies the '.tex' suffix with the 'ascii.latex' format. [#15088]
The
Cosmologyclass now has a new property to access the parameters of thecosmology:
.parameters. This property return a read-only dictionary of all thenon-derived parameter values on the cosmology object. When accessed from the class (not
an instance) the dictionary contains
Parameterinstances, not the values. [#15168]The field
defaulthas been added toParameter. This can be used to introspectthe default value of a parameter on a cosmology class e.g.
LambdaCDM.H0.default. [#15400]astropy.io.fits
^^^^^^^^^^^^^^^
decompress_in_memorytofits.open, to decompress thewhole file in memory at once, instead of decompressing the file progressively
as data is needed. Default behavior is better for memory usage but sometimes
slow, especially for files with many small HDUs. [#15501]
astropy.io.votable
^^^^^^^^^^^^^^^^^^
Add support for Parquet serialization of VOTables. Writing of this
serialization is available with using the new
'votable.parquet'format. [#15281]Added MIVOT feature through the
MivotBlockclassthat allows model annotations reading and writing in VOTable. [#15390]
astropy.modeling
^^^^^^^^^^^^^^^^
GeneralSersic2Dmodel that can have "boxy" or "disky"isophotes. [#15545]
astropy.nddata
^^^^^^^^^^^^^^
NDDataobjects which visually indicates masked entries, and provides forbetter for dask array support. [#14438]
astropy.table
^^^^^^^^^^^^^
Row.get()method, analogous todict.get(), returns the value ofthe specified column from the row if the column present, otherwise it returns a
fallback value, which by default is
None. [#14878]astropy.time
^^^^^^^^^^^^
Masked
Timeinstances now use astropy's ownMaskedclass internally.This means that
Maskedinput is now properly recognized, and that masksget propagated also to
Quantityoutput (such as from aTimeDeltaconverted to a unit of time), creating
MaskedQuantityinstances. [#15231]Added a
TimeDeltaformatquantity_strthat represents the time delta as a stringwith one or more
Quantitycomponents. This format provides a human-readablemulti-scale string representation of a time delta. The default output sub-format is not
considered stable in this release, plehttps://github.com/astropy/astropy/issues/15485es/15485
for more information. [#15264]
astropy.uncertainty
^^^^^^^^^^^^^^^^^^^
Uncertainty
Distributionnow support structured data types, and asa result it now works also with
EarthLocation. [#15304]Uncertainty
Distributioncan now be used inside representations, whichalso allows basic support in
SkyCoord. While most calculations work, thereare remaining issues. For instance, the
reprdoes not show that thecoordinates are distributions. [#15395]
astropy.units
^^^^^^^^^^^^^
using equatorial radius and flattening. [#14729]
astropy.utils
^^^^^^^^^^^^^
The
astropy.utils.metadata.MetaDatadefault dictionary can now beset with the
default_factorykeyword argument. [#15265]astropy.utils.decorators.deprecatednow adds the__deprecated__attribute tothe objects it wraps, following the practice in https://peps.python.org/pep-0702/. [#15310]
astropy.visualization
^^^^^^^^^^^^^^^^^^^^^
WCSAxes.text_coordmethod to print text usingSkyCoordobjectsparallel to plotting data points with
WCSAxes.plot_coord. [#14661]astropy.wcs
^^^^^^^^^^^
Support WCS descriptions of basic planetary coordinate frames. [#14820]
Updated bundled WCSLIB version to 8.1. This update adds support planetary keywords
A_RADIUS,B_RADIUS,C_RADIUS,BLON_OBS,BLAT_OBS, andBDIS_OBSinauxprmand addswcsprm::timeto thewcsprmstruct to record theTIMEaxis. This update also includes several bug fixes. For a full list of changes - see http://www.atnf.csiro.au/people/mcalabre/WCS/CHANGES [#15035]API Changes
astropy.config
^^^^^^^^^^^^^^
ConfigurationMissingWarningclass andupdate_default_configfunction;There are no replacements as they should no be used anymore. [#15466]
astropy.convolution
^^^^^^^^^^^^^^^^^^^
Invalid kernel arithmetic operations now raise a
KernelArithmeticErrorinstead of abare
Exception. [#14728]Added base
KernelErrorerror class and removedDiscretizationErrorerror class (aValueErrorwill be raised instead). [#14732]discretize_modelwill now raise aValueErrorifmode='oversample'andfactordoes not have an integer value. [#14794]astropy.coordinates
^^^^^^^^^^^^^^^^^^^
Removed deprecated angle parsing and formatting utilities from
angle_utilities.Use the functions from
angle_formatsinstead. [#14675]The deprecated functionality of initializing
AngleorLongitudefrom atupleis no longer supported. [#15205]Angle-related classes and functions have been moved within
astropy.coordinates.There is no change to public API as everything moved should still be imported from
astropy.coordinates, not a sub-module. If you are using private API, try importingfrom
astropy.coordinatesinstead. If you need something that has been moved and isnot available in
astropy.coordinates, please open an issue on the Astropy issuetracker. [#15220]
It is no longer possible to pass frame classes to the
transform_to()methodof a low-level coordinate-frame class. It is still possible to pass frame
instances. The
transform_to()method of the high-levelSkyCoordclassis unaffected. [#15500]
astropy.cosmology
^^^^^^^^^^^^^^^^^
Removed support of importing private constants and functions from
astropy.cosmology.flrw. [#14672]Removed deprecated Cosmology Parameter argument
fmt. [#14673]Removed deprecated
vectorize_if_neededandinf_likefromcosmology.utils. [#14677]Removed deprecated import paths from
astropy.cosmology.core. [#14782]Cosmology
Parameteris now adataclass, and can work with all of Python's dataclassesmachinery, like field introspection and type conversion. [#14874]
A new property --
scale_factor0-- has been added to Cosmology objects.This is the scale factor at redshift 0, and is defined to be 1.0. [#14931]
Added registration label
ascii.latexto Cosmology IO. [#14938]The private module
astropy.cosmology.utilshas been deprecated. [#14980]Removed deprecated
get_cosmology_from_stringclass method indefault_cosmology; usegetinstead. [#15467]astropy.io.ascii
^^^^^^^^^^^^^^^^
Several arguments in functions within
astropy.io.asciihave been deprecated andare either renamed or scheduled to be removed.
read():Readerwill be removed. Instead supply the equivalentformatargument.Inputterhas been renamed toinputter_cls.Outputterhas been renamed tooutputter_cls.get_reader():Readerhas been renamed toreader_cls.Inputterhas been renamed toinputter_cls.Outputterhas been renamed tooutputter_cls.write():Writerwill be removed. Instead supply the equivalentformatargument.get_writer():Writerhas been renamed towriter_cls. [#14914]Removed deprecated
astropy.io.ascii.tests.common.raisestest helper; usepytest.raisesinstead. [#15470]astropy.io.fits
^^^^^^^^^^^^^^^
Deprecate
_ExtensionHDUand_NonstandardExtHDU(useExtensionHDUorNonstandardExtHDUinstead). [#15396]Remove special handling of TCTYP TCUNI TCRPX TCRVL TCDLT TRPOS (#7157). [#15396]
Rename and deprecate
TableHDU.updatetoTableHDU.update_header, forconsistency with
ImageHDU. [#15396]astropy.io.misc
^^^^^^^^^^^^^^^
Removed deprecated
astropy.io.misc.asdfsubpackage. Useasdf-astropypackage instead. [#14668]fnunpickleandfnpickleare deprecated because they are not used anywhere withinastropy.If you must, use the module from Python standard library but be advised that pickle is insecure
so you should only unpickle data that you trust. [#15418]
astropy.io.votable
^^^^^^^^^^^^^^^^^^
Removed deprecated
pedanticoption from theastropy.io.votable.table.parse()function and the corresponding configurationsetting. Use the
verifyoption instead. [#14669]Class
astropy.io.votable.tree.Tablehas been renamed toTableElementto avoid sharing the name with
astropy.table.Table. [#15372]Fully removed support for version = '1.0' on
VOTableFile__init__()and changed its tests to check correctly.It was raising a
DeprecationWarningand now is raising aValueError. [#15490]astropy.modeling
^^^^^^^^^^^^^^^^
Removed the
AliasDictclass frommodeling.utils. [#12943]Creating a model instance with parameters that have incompatible shapes will
now raise a
ValueErrorrather than anIncompatibleShapeError. [#15209]Removal of deprecated code
_model_to_fit_paramsand_fitter_to_model_paramsfromfitting.py. [#15461]astropy.stats
^^^^^^^^^^^^^
BoxLeastSquares,BoxLeastSquaresResultsandLombScargleclassesare not available from
astropy.statsanymore, they are now available onlyfrom
astropy.timeseries. [#15530]astropy.tests
^^^^^^^^^^^^^
Removed deprecated deprecation, warning, and exception handling functionality provided by
astropy.tests.helper. [#14670]astropy.tests.command.FixRemoteDataOptionandastropy.tests.command.AstropyTestare deprecated.They are no longer necessary after sunsetting
astropy-helpers. [#15204]astropy.time
^^^^^^^^^^^^
Timehas switched to useMaskedarrays internally, instead ofindicating masked values using NaN in the internal
jd2attribute. As aresult, any output from instances, such as one gets with, say, the
.isotformat, will also use
Maskedby default.For backwards compatibility, a new configuration item,
astropy.time.conf.masked_array_typeis introduced which is set to"astropy" by default (which indicates one wants to use
Masked), but canalso be set to "numpy", in which case
numpy.ma.MaskedArraywill be usedwhere possible (essentially, for all but
Quantity). [#15231]Changed the
TimeDeltainit signature to be consistent with that ofTime.Previously the argument order was
val, val2, format, scale, copy. Now the order isval, val2, format, scale, *, precision, in_subfmt, out_subfmt, copy, where thearguments after the
*must be specified by keyword. [#15264]astropy.timeseries
^^^^^^^^^^^^^^^^^^
midpoint_epochinfoldfunction; useepoch_timeinstead. [#15462]astropy.uncertainty
^^^^^^^^^^^^^^^^^^^
The
.dtypeattribute exposed byDistributionis now that ofthe samples, rather than one that has a "samples" entry. This makes
quantities with structured data types and units easier to support, and
generally makes the
Distributionappear more similar to regulararrays. It should have little effect on code. For instance,
distribution["samples"]still will return the actual distribution.As a consequence of this refactoring, most arrays that are not
C-contiguous can now be viewed and will thus not be copied on input
any more. The only exceptions are arrays for which the strides are
negative.
Note that the true data type is considered an implementation detail.
But for reference, it now is a structured data type with a single
field, "samples", which itself is an array of "sample" fields, which
contain the actual data. [#15304]
astropy.units
^^^^^^^^^^^^^
Like
np.ndarray, under numpy 2.0Quantityand all its subclasses(
Angle,Masked, etc.) will no longer support the.ptp()method.Use
np.ptp(...)instead.Similarly, support for the much less frequently used
.newbyteorder()and.itemset()methods has been removed. [#15378]The following deprecated functionality has been removed:
littlehunit andwith_H0equivalency. They are still available fromcosmology.units.brightness_temperatureequivalency no longer automatically swaps theorder of its arguments if it does not match the expectation.
PhysicalTypeno longer supportsstrmethods and attributes. [#15514]astropy.utils
^^^^^^^^^^^^^
Removed deprecated
OrderedDescriptor,OrderedDescriptorContainer, andset_localeinastropy.utils.misc. [#14679]is_path_hidden()andwalk_skip_hidden()are deprecated. [#14759]The structure of
utils.metadatahas been refactored, but all the availablefunctions and classes are still present and should be imported as before. [#15166]
The
astropy.utils.metadata.MetaDataclass, which is used throughout astropyto carry metadata on tables, columns, etc., can now also be used on dataclasses.
When accessing the meta attribute on a class
astropy.utils.metadata.MetaDatanow returns None instead of itself. [#15237]
The
astropy.utils.metadata.MetaDataclass, which is used throughout astropyto carry metadata on tables, columns, etc., can now also be used on frozen dataclasses. [#15404]
Removed deprecated
version_pathinminversionfunction; it is no longer used. [#15468]astropy.visualization
^^^^^^^^^^^^^^^^^^^^^
The
bboxes,ticklabels_bbox, andtick_out_sizearguments toastropy.visualization.wcaxes.ticklabels.TickLabels.draw()now have no effect and are deprecated.This is to allow rasterized ticks to be drawn correctly on WCSAxes. [#14760]
It is now not possible to pass any keyword arguments to
astropy.visualization.wcsaxes.WCSAxes.draw().Previously passing any keyword arguments would have errored anyway, as
matplotlib.axes.Axes.draw()does not accept keyword arguments. [#14772]Deprecated the
expattribute in theLogStretch,InvertedLogStretch,PowerDistStretch, andInvertedPowerDistStretchstretch classes, and thepowerattribute in the
PowerStretch. Instead, use theaattribute,which matches the input keyword. [#15538]
Removed the maximum value of the
aparameter in theAsinhStretchand
SinhStretchstretch classes. [#15539]astropy.wcs
^^^^^^^^^^^
Removed deprecated
accuracyfromall_world2pixmethod inWCS; usetoleranceinstead. [#15464]NoConvergenceno longer accepts arbitrary keyword arguments. [#15504]Bug Fixes
astropy.coordinates
^^^^^^^^^^^^^^^^^^^
astropy.cosmology
^^^^^^^^^^^^^^^^^
The exponent in
w0wzCDM.de_density_scalehas been corrected to 3, from -3.This correction has also been made to the scalar
inv_efunccpython functions. [#14991]pandas.Seriesare now uniformly converted to their underlying data type when givenas an argument to a Cosmology method. [#15600]
astropy.io.fits
^^^^^^^^^^^^^^^
Reading a table from FITS now respects the TNULL property of a column, passing
it into the column's
fill_value. [#14723]Fix crash when a PrimaryHDU has a GROUPS keyword with a non-boolean value (i.e.
not a random-groups HDU). [#14998]
Fixed a bug that caused
Cutout2Dto not work correctly withCompImageHDU.section[#14999]Fixed a bug that caused compressed images with TFORM missing the optional '1' prefix to not be readable. [#15001]
Ensure that tables written to FITS with both masked and unmasked columns
roundtrip properly (previously, all integer columns would become masked
if any column was masked). [#15473]
Fix segfault with error report in tile decompression. [#15489]
astropy.io.votable
^^^^^^^^^^^^^^^^^^
reprfor VOTable instance now clearly shows it is a VOTable and not generic astropy Table. [#14702]astropy.modeling
^^^^^^^^^^^^^^^^
astropy.nddata
^^^^^^^^^^^^^^
NDData.mask, plus a fixfor arithmetic between masked and unmasked
NDDataobjects. [#14995]astropy.table
^^^^^^^^^^^^^
Table.as_arraynow respects thefill_valueproperty of masked columns. [#14723]Fix a bug where table indexes were not using a stable sort order. This was causing the
order of rows within groups to not match the original table order when an indexed table
was grouped. [#14907]
Fixed issue #14964 that when grouping a Table on a mixin column such as
QuantityorTime, the grouped table keys did not reflect the original column values. ForQuantitythis meant that the key values were pure float values without the unit,while for
Timethe key values were the pair ofjd1andjd2float values. [#14966]astropy.time
^^^^^^^^^^^^
Timecaches of formats and scales do not get outof sync with the actual data, even if another instance, holding a view
of the data is written to. E.g., if one does
t01 = t[:2], andsets
t[0]after, it is now guaranteed thatt01.valuewillcorrectly reflect that change in value. [#15453]
astropy.units
^^^^^^^^^^^^^
astropy.utils
^^^^^^^^^^^^^
Ufuncs with more than 2 operands (such as
erfa.dtf2d) now workalso if all inputs are scalars and more than two inputs have masks. [#15450]
Ensured that
str(masked_array)looks likestr(unmasked_array)also forarray scalars. Thus, like regular array scalars, the precision is ignored for
float, and strings do not include extra quoting. [#15451]
astropy.visualization
^^^^^^^^^^^^^^^^^^^^^
The location of ticklabels on a WCSAxes is now correctly calculated when the figure is rasterized. [#14760]
Fixed a bug where a
ValueErrorwould be raised in theAsinhStretchandSinhStretchclasses for validaparametervalues. [#15539]
astropy.wcs
^^^^^^^^^^^
wcs.validate(filename)now properly closes the file handler. [#15054]Fix a regression in custom WCS mapping due to the recent introduction of
Solar System frames. [#15630]
Other Changes and Additions
The minimum supported version of NumPy is now 1.22. [#15006]
Moved International Earth Rotation and Reference Systems (IERS) and Leap Second
files out into standalone astropy-iers-data package, maintaining full
backward-compatibility in the
astropy.utils.iersAPI. Deprecationwarnings may be issued when certain files are accessed directly. [#14819]
Switch from using
setup.cfgfor project configuration to usingpyproject.toml. [#15247]Update bundled expat to 2.5.0. [#15585]
v5.3.4Compare Source
==========================
Bug Fixes
astropy.io.misc
^^^^^^^^^^^^^^^
astropy.io.misc.yamlsodump()` with a numpy object array orload()with YAML representing a Numpy object array both raiseTypeError``. This prevents problems like a segmentation fault. [#15373]astropy.io.votable
^^^^^^^^^^^^^^^^^^
convert_to_writable_filelikewhereGzipFilewas notclosed properly. [#15359]
astropy.units
^^^^^^^^^^^^^
In VOUnit, the spaces around the slash were removed in the formatting of
fractions, and fractional powers now also use the "**" operator. [#15282]
We now ensure that the unit
u.cgs.cmis just an alias ofu.si.cm,instead of a redefinition. This ensures that
u.Unit("cm") / u.cmwill reliably cancel to dimensionless (instead of some "cm / cm"). [#15368]
astropy.utils
^^^^^^^^^^^^^
Masked,np.ptpand the.ptp()method now properly account forthe mask, ensuring the result is identical to subtracting the maximum and
minimum (with the same arguments). [#15380]
Other Changes and Additions
Compatibility with Python 3.12. [#14784]
Replaced the URL of
IETF_LEAP_SECOND_URLbecause the original is nowdefunct and IETF now defers to IANA for such look-up. [#15421]
v5.3.3Compare Source
===========================
Bug Fixes
astropy.coordinates
^^^^^^^^^^^^^^^^^^^
TransformGraph.to_dot_graph()now throws an exception for invalidsavelayout.astropy.cosmology
^^^^^^^^^^^^^^^^^
w0wzCDMfunctions ininv_efunchas been corrected to 3, from -3. [#15224]astropy.modeling
^^^^^^^^^^^^^^^^
filter_non_finitekeyword argument in a fitter call. Now when
filter_non_finiteis True,non-finite weights will also be filtered to prevent crashes in
LevMarLSQFitter. [#15215]astropy.units
^^^^^^^^^^^^^
astropy.units.Quantity's implementation ofnumpy.nanmedian(),where for Numpy >= 1.25 an exception was raised for some array shapes and axis
combinations. [#15228]
Other Changes and Additions
v5.3.2Compare Source
==========================
Bug Fixes
astropy.coordinates
^^^^^^^^^^^^^^^^^^^
-OOflag. [#15037]astropy.nddata
^^^^^^^^^^^^^^
NDDatawithout masks or units. [#15082]astropy.units
^^^^^^^^^^^^^
np.power()for instances ofQuantitytoallow any array as the second operand if all its elements have the same value. [#15101]
v5.3.1Compare Source
==========================
Bug Fixes
astropy.cosmology
^^^^^^^^^^^^^^^^^
wowzCDM.de_density_scalehas been corrected to 3, from -3. [#14991]astropy.io.fits
^^^^^^^^^^^^^^^
Fix crash when a PrimaryHDU has a GROUPS keyword with a non-boolean value (i.e.
not a random-groups HDU). [#14998]
Fixed a bug that caused
Cutout2Dto not work correctly withCompImageHDU.section[#14999]Fixed a bug that caused compressed images with TFORM missing the optional '1' prefix to not be readable. [#15001]
astropy.modeling
^^^^^^^^^^^^^^^^
astropy.nddata
^^^^^^^^^^^^^^
NDData.mask, plus a fixfor arithmetic between masked and unmasked
NDDataobjects. [#14995]astropy.table
^^^^^^^^^^^^^
order of rows within groups to not match the original table order when an indexed table
was grouped. [#14907]
astropy.units
^^^^^^^^^^^^^
v5.3Compare Source
==========================
Bug Fixes
astropy.io.misc
^^^^^^^^^^^^^^^
astropy.io.misc.yamlsodump()` with a numpy object array orload()with YAML representing a Numpy object array both raiseTypeError``. This prevents problems like a segmentation fault. [#15373]astropy.io.votable
^^^^^^^^^^^^^^^^^^
convert_to_writable_filelikewhereGzipFilewas notclosed properly. [#15359]
astropy.units
^^^^^^^^^^^^^
In VOUnit, the spaces around the slash were removed in the formatting of
fractions, and fractional powers now also use the "**" operator. [#15282]
We now ensure that the unit
u.cgs.cmis just an alias ofu.si.cm,instead of a redefinition. This ensures that
u.Unit("cm") / u.cmwill reliably cancel to dimensionless (instead of some "cm / cm"). [#15368]
astropy.utils
^^^^^^^^^^^^^
Masked,np.ptpand the.ptp()method now properly account forthe mask, ensuring the result is identical to subtracting the maximum and
minimum (with the same arguments). [#15380]
Other Changes and Additions
Compatibility with Python 3.12. [#14784]
Replaced the URL of
IETF_LEAP_SECOND_URLbecause the original is nowdefunct and IETF now defers to IANA for such look-up. [#15421]
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