Skip to content

v1.0.0
Compare
Choose a tag to compare
@tcrombie tcrombie released this 05 Apr 17:47
· 28 commits to master since this release
v1.0.0
0ad530d
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.

This is the initial release of easyXpress

  • This version contains four additional functions not described in Nyaanga et al. 2021. These functions help organize .TIFs for cellprofiler-nf and create diagnostic thumbnail images.
    • tidyImages - This function organizes the .TIF files exported from an imager platform by creating a raw_images subdirectory in the project directory, moving all the .TIF files into it, and removing non-TIF files and folders if desired.
    • wellThumbs - This function makes .png thumbnails from .TIF files in the raw_images directory. The thumbnails are saved to the raw_image_thumbs subdirectory in the project directory.
    • plateThumbs - This function arrays the thumbnails in the raw_image_thumbs subdirectory into a single image for each 96-well plate. The plate thumbnails are saved to the raw_plate_thumbs subdirectory in the project directory.
    • tidyProject - This function executes the three pervious functions with a single call.
Assets 2
Loading