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maswendt authored Oct 30, 2024
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## 10/2024 Markus and Aref attend ESMRMB conference in Barcelona
Markus contributed an invited talk at the preclinical MRI pre-congress and a lightning talk with poster presentation about diffusion tract masks. Aref presented a poster on recurrence plot.
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## 01/2024 NFDI4HEALTH Local data hub application successfull
Markus together with Anna Grönke (University Hospital Cologne, MeDIC) Oya Beyan and Ekaterina Kutafina (University of Cologne, Biomedical Informatics) receive funding to establish a translational stroke neuroimaging data hub at the University Hospital Cologne.

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## 03/2024 AMIRE Session at EMIM 2024
The <a href="https://github.com/Aswendt-Lab/MRI_Standardization_AIDAqc">AMIRE project</a> was initiated in 2023 by Markus Aswendt and Giovanna Ielacqua (Max Delbrück Center Berlin), both EMIM Study group: Standardization, as a collaborative effort to improve quality control, quality assurance procedures, standardization, and reproducibility in small animal MRI.
The initiative is currently split into two projects: 1) the development of an automated quality control tool for retrospective identification of bad quality images from anatomical, structural and functional MRI, and 2) the quantification of cross-lab measurement stability using standardized MRI phantoms.
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## 12/2023 Inofficial best-of 2023
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## 10/2023 COMULISglobe global showcase project receives funding
In collaboration with [Maged Goubran](https://sunnybrook.ca/research/team/member.asp?m=894&page=528) (Toronto, Canada) and [Christoph Leuze](https://profiles.stanford.edu/christoph-leuze) (Stanford, USA), we receive funding from the Chan Zuckerber Foundation and the COMULISglobe project to "Demystifiy white matter plasticity by cross-connectome mapping with in vivo diffusion imaging and light sheet microscopy".
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## 03/2023 INCF Neuroinformatics workshop
We organized a practical guide to overcome the reproducibility crisis in small animal neuroimaging: workflows, tools, and repositories. Thanks to our excellent contributors, the workshop was a great success.
[GitHub Link to the workshop material:](https://github.com/grandjeanlab/INCF_preclinical/tree/main)
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- DataLad developer
- [Website](https://www.psychoinformatics.de/software.html)


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## 10/2023 First prize for Aref Kalantari at MRI Together Session
European Society for Magnetic Resonance in Medicine and Biology 2023 in Basel, Switzerland
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## 07/2023 Invited talk at Charité Berlin
For the seminar series of the Department of Experimental Neurology, Markus gave a presentation on "Demystifying astrogliosis after cortical stroke in mice using functional connectivity analysis". Markus together with Aref and Fatemeh enjoyed a fruitful discussion with our long-standing collaboration partner Prof. Philipp Boehm-Sturm and colleagues.
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## 12/2022 Inofficial best of 2022
### Successfully completed master thesis:
- **Prisca Kuhnhäuser** (University of Cologne): _Identification and manipulation of spasticity-related extrapyramidal motor nuclei in mice_
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## 08/2020 First poster prize for Markus at EMIM
Enhanced transhemispheric connectivity after cortical stroke in mice.
See the post pitch here:
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Your browser does not support the video tag.
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## 12/2020 Inofficial best of 2020
### Successfully completed PhD thesis:
- **Niklas Pallast** (University of Cologne, Germany): _A versatile registration and analysis pipeline for multimodal brain imaging data_
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