diff --git a/paper.md b/paper.md index 2e892c0..a4e5a24 100644 --- a/paper.md +++ b/paper.md @@ -4,112 +4,118 @@ layout: page --- ### 2024 -- Paß T, Ricke KM, Hofmann P, Chowdhury RS, Nie Y, Chinnery P, Endepols H, Neumaier B, Carvalho A, Rigoux L, Steculorum SM, Prudent J, Riemer T, Aswendt M, Liss B, Brachvogel B, Wiesner RJ. [Preserved striatal innervation maintains motor function despite severe loss of nigral dopaminergic neurons.](https://doi.org/10.1093/brain/awae089) -**Brain** 2024 Apr 4:awae089 +- Kalantari A, Hambrock C, Grefkes C, Fink GR, Aswendt M. [Proportional recovery in mice with cortical stroke](https://doi.org/10.1101/2024.10.11.614428) +**bioRxiv** 2024.10.11.614428. + +- Kalantari A, Shahbazi M, Schneider, M, Raikes AC, Frazão VV, Bhattrai A, Carnevale L, Diao Y, Franx BA, and Gammaraccio F,Goncalves L, Lee S, van Leeuwen EM, Michalek A, Mueller S, Olvera AR, Padro D, Selim MK, van der Toorn A, Varriano F, Vrooman R, Wenk P, Albers HE, Boehm-Sturm P, Budinger E, Canals S, De Santis S, Brinton RD, Dijkhuizen RM, Eixarch E, Forloni G, Grandjean J, Hekmatyar K, Jacobs RE, Jelescu I, Kurniawan ND, Lembo G, Longo DL, Maria NSS, Micotti E, Muñoz-Moreno E, Ramos-Cabrer P, Reichardt W, Soria G, Ielacqua GD, Aswendt, M. [Automated quality control of small animal MR neuroimaging data.](https://doi.org/10.1162/imag_a_00317) +**Imaging Neuroscience** 2024; 2 1–23. + +- Paß T, Ricke KM, Hofmann P, Chowdhury RS, Nie Y, Chinnery P, Endepols H, Neumaier B, Carvalho A, Rigoux L, Steculorum SM, Prudent J, Riemer T, Aswendt M, Liss B, Brachvogel B, Wiesner RJ. [Preserved striatal innervation maintains motor function despite severe loss of nigral dopaminergic neurons.](https://doi.org/10.1093/brain/awae089) +**Brain** 2024 Sep 3;147(9):3189-3203. ### 2023 -- Blaschke SJ, Vlachakis S, Pallast N, Walter HL, Volz LJ, Wiedermann D, Fink GR, Hoehn M, Aswendt M, Schroeter M, Rueger MA. [Transcranial Direct Current Stimulation Reverses Stroke-Induced Network Alterations in Mice.](https://doi.org/10.1161/strokeaha.123.042808) +- Blaschke SJ, Vlachakis S, Pallast N, Walter HL, Volz LJ, Wiedermann D, Fink GR, Hoehn M, Aswendt M, Schroeter M, Rueger MA. [Transcranial Direct Current Stimulation Reverses Stroke-Induced Network Alterations in Mice.](https://doi.org/10.1161/strokeaha.123.042808) **Stroke** 2023 Aug;54(8):2145-2155 -- Mahani FSN, Kalantari A, Fink GR, Hoehn M, Aswendt M. [A systematic review of the relationship between magnetic resonance imaging based resting-state and structural networks in the rodent brain](https://doi.org/10.3389/fnins.2023.1194630) +- Mahani FSN, Kalantari A, Fink GR, Hoehn M, Aswendt M. [A systematic review of the relationship between magnetic resonance imaging based resting-state and structural networks in the rodent brain](https://doi.org/10.3389/fnins.2023.1194630) **Frontiers in Neuroscience** 2023 Jul 24;17:1194630 -- Aswendt M, Hoehn M. [Functional hyperconnectivity related to brain disease: maladaptive process or element of resilience?](https://doi.org/10.4103/1673-5374.361541) +- Aswendt M, Hoehn M. [Functional hyperconnectivity related to brain disease: maladaptive process or element of resilience?](https://doi.org/10.4103/1673-5374.361541) **Neural Regeneration Research** 2023 Jul;18(7):1489-1490 -- Kalantari A, Szczepanik M, Heunis S, Mönch C, Hanke M, Wachtler T, Aswendt M. [How to establish and maintain a multimodal animal research dataset using DataLad.](https://doi.org/10.1038/s41597-023-02242-8) +- Kalantari A, Szczepanik M, Heunis S, Mönch C, Hanke M, Wachtler T, Aswendt M. [How to establish and maintain a multimodal animal research dataset using DataLad.](https://doi.org/10.1038/s41597-023-02242-8) **Scientific Data** 2023 Jun 5;10(1):357 -- Tavares AAS, Mezzanotte L, McDougald W, Bernsen MR, Vanhove C, Aswendt M, Ielacqua GD, Gremse F, Moran CM, Warnock G, Kuntner C, Huisman MC. [Community Survey Results Show that Standardisation of Preclinical Imaging Techniques Remains a Challenge.](https://doi.org/10.1007/s11307-022-01790-6) +- Tavares AAS, Mezzanotte L, McDougald W, Bernsen MR, Vanhove C, Aswendt M, Ielacqua GD, Gremse F, Moran CM, Warnock G, Kuntner C, Huisman MC. [Community Survey Results Show that Standardisation of Preclinical Imaging Techniques Remains a Challenge.](https://doi.org/10.1007/s11307-022-01790-6) **Molecular Imaging and Biology** 2023 Jun;25(3):560-568 -- Stokowska A, Aswendt M, Zucha D, Lohmann S, Wieters F, Morán Suarez J, Atkins AL, Li Y, Miteva M, Lewin J, Wiedermann D, Diedenhofen M, Torinsson Naluai Å, Abaffy P, Valihrach L, Kubista M, Hoehn M, Pekny M, Pekna M. [Complement C3a treatment accelerates recovery after stroke via modulation of astrocyte reactivity and cortical connectivity.](https://doi.org/10.1172/JCI162253) +- Stokowska A, Aswendt M, Zucha D, Lohmann S, Wieters F, Morán Suarez J, Atkins AL, Li Y, Miteva M, Lewin J, Wiedermann D, Diedenhofen M, Torinsson Naluai Å, Abaffy P, Valihrach L, Kubista M, Hoehn M, Pekny M, Pekna M. [Complement C3a treatment accelerates recovery after stroke via modulation of astrocyte reactivity and cortical connectivity.](https://doi.org/10.1172/JCI162253) **The Journal of Clinical Investigation** 2023 May 15;133(10):e162253 -- Götz J, Wieters F, Fritz VJ, Käsgen O, Kalantari A, Fink GR, Aswendt M. [Temporal and Spatial Gene Expression Profile of Stroke Recovery Genes in Mice.](https://doi.org/10.3390/genes14020454) +- Götz J, Wieters F, Fritz VJ, Käsgen O, Kalantari A, Fink GR, Aswendt M. [Temporal and Spatial Gene Expression Profile of Stroke Recovery Genes in Mice.](https://doi.org/10.3390/genes14020454) **Genes (Basel)** 2023 Feb 9;14(2):454 ### 2022 -- Wieters F, Gruhn M, Büschges A, Fink GR, Aswendt M. [Terminal H-reflex Measurements in Mice.](https://doi.org/10.3791/63304) +- Wieters F, Gruhn M, Büschges A, Fink GR, Aswendt M. [Terminal H-reflex Measurements in Mice.](https://doi.org/10.3791/63304) **JoVE Journal** 2022 Jun 16;(184) -- Scharwächter L, Schmitt FJ, Pallast N, Fink GR, Aswendt M. [Network analysis of neuroimaging in mice.](https://doi.org/10.1016/j.neuroimage.2022.119110) +- Scharwächter L, Schmitt FJ, Pallast N, Fink GR, Aswendt M. [Network analysis of neuroimaging in mice.](https://doi.org/10.1016/j.neuroimage.2022.119110) **NeuroImage** 2022.119110 -- Aswendt M, Wilhelmsson U, Wieters F, Stokowska A, Schmitt FJ, Pallast N, de Pablo Y, Mohammed L, Hoehn M, Pekna M, Pekny M. [Reactive astrocytes prevent maladaptive plasticity after ischemic stroke.](https://doi.org/10.1016/j.pneurobio.2021.102199) +- Aswendt M, Wilhelmsson U, Wieters F, Stokowska A, Schmitt FJ, Pallast N, de Pablo Y, Mohammed L, Hoehn M, Pekna M, Pekny M. [Reactive astrocytes prevent maladaptive plasticity after ischemic stroke.](https://doi.org/10.1016/j.pneurobio.2021.102199) **Progress in Neurobiology** 2022 Feb;209:102199 ### 2021 -- Aswendt M, Green C, Sadler R, Llovera G, Dzikowski L, Heindl S, Gomez de Agüero M, Diedenhofen M, Vogel S, Wieters F, Wiedermann D, Liesz A, Hoehn M. [The gut microbiota modulates brain network connectivity under physiological conditions and after acute brain ischemia.](https://doi.org/10.1016/j.isci.2021.103095) +- Aswendt M, Green C, Sadler R, Llovera G, Dzikowski L, Heindl S, Gomez de Agüero M, Diedenhofen M, Vogel S, Wieters F, Wiedermann D, Liesz A, Hoehn M. [The gut microbiota modulates brain network connectivity under physiological conditions and after acute brain ischemia.](https://doi.org/10.1016/j.isci.2021.103095) **iScience** 2021 Sep 9;24(10):103095 -- Glover JC, Aswendt M, Boulland JL, Lojk J, Stamenković S, Andjus P, Fiori F, Hoehn M, Mitrecic D, Pavlin M, Cavalli S, Frati C, Quaini F; EU COST Action 16122 (BIONECA). [Correction to: *In vivo* Cell Tracking Using Non-invasive Imaging of Iron Oxide-Based Particles with Particular Relevance for Stem Cell-Based Treatments of Neurological and Cardiac Disease.](https://doi.org/10.1007/s11307-021-01590-4) +- Glover JC, Aswendt M, Boulland JL, Lojk J, Stamenković S, Andjus P, Fiori F, Hoehn M, Mitrecic D, Pavlin M, Cavalli S, Frati C, Quaini F; EU COST Action 16122 (BIONECA). [Correction to: *In vivo* Cell Tracking Using Non-invasive Imaging of Iron Oxide-Based Particles with Particular Relevance for Stem Cell-Based Treatments of Neurological and Cardiac Disease.](https://doi.org/10.1007/s11307-021-01590-4) **Molecular Imaging and Biology** 2021 Aug;23(4):624 -- Wieters F, Aswendt M. [Structural integrity and remodeling underlying functional recovery after stroke.](https://doi.org/10.4103/1673-5374.301004) +- Wieters F, Aswendt M. [Structural integrity and remodeling underlying functional recovery after stroke.](https://doi.org/10.4103/1673-5374.301004) **Neural Regeneration Research** 2021 Jul;16(7):1423-1424 -- Leuze C, Goubran M, Barakovic M, Aswendt M, Tian Q, Hsueh B, Crow A, Weber EMM, Steinberg GK, Zeineh M, Plowey ED, Daducci A, Innocenti G, Thiran JP, Deisseroth K, McNab JA. [Comparison of diffusion MRI and CLARITY fiber orientation estimates in both gray and white matter regions of human and primate brain.](https://doi.org/10.1016/j.neuroimage.2020.117692) +- Leuze C, Goubran M, Barakovic M, Aswendt M, Tian Q, Hsueh B, Crow A, Weber EMM, Steinberg GK, Zeineh M, Plowey ED, Daducci A, Innocenti G, Thiran JP, Deisseroth K, McNab JA. [Comparison of diffusion MRI and CLARITY fiber orientation estimates in both gray and white matter regions of human and primate brain.](https://doi.org/10.1016/j.neuroimage.2020.117692) **NeuroImage** 2021 Mar;228:117692 -- Aswendt M, Pallast N, Wieters F, Baues M, Hoehn M, Fink GR. [Lesion Size- and Location-Dependent Recruitment of Contralesional Thalamus and Motor Cortex Facilitates Recovery after Stroke in Mice.](https://doi.org/10.1007/s12975-020-00802-3) +- Aswendt M, Pallast N, Wieters F, Baues M, Hoehn M, Fink GR. [Lesion Size- and Location-Dependent Recruitment of Contralesional Thalamus and Motor Cortex Facilitates Recovery after Stroke in Mice.](https://doi.org/10.1007/s12975-020-00802-3) **Translational Stroke Research** 2021 Feb;12(1):87-97 -- Wieters F, Weiss Lucas C, Gruhn M, Büschges A, Fink GR, Aswendt M. [Introduction to spasticity and related mouse models.](https://doi.org/10.1016/j.expneurol.2020.113491) +- Wieters F, Weiss Lucas C, Gruhn M, Büschges A, Fink GR, Aswendt M. [Introduction to spasticity and related mouse models.](https://doi.org/10.1016/j.expneurol.2020.113491) **Experimental Neurology** 2021 Jan;335:113491 ### 2020 -- Glover JC, Aswendt M, Boulland JL, Lojk J, Stamenković S, Andjus P, Fiori F, Hoehn M, Mitrecic D, Pavlin M, Cavalli S, Frati C, Quaini F; EU COST Action 16122 (BIONECA). [*In vivo* Cell Tracking Using Non-invasive Imaging of Iron Oxide-Based Particles with Particular Relevance for Stem Cell-Based Treatments of Neurological and Cardiac Disease.](https://doi.org/10.1007/s11307-019-01440-4) +- Glover JC, Aswendt M, Boulland JL, Lojk J, Stamenković S, Andjus P, Fiori F, Hoehn M, Mitrecic D, Pavlin M, Cavalli S, Frati C, Quaini F; EU COST Action 16122 (BIONECA). [*In vivo* Cell Tracking Using Non-invasive Imaging of Iron Oxide-Based Particles with Particular Relevance for Stem Cell-Based Treatments of Neurological and Cardiac Disease.](https://doi.org/10.1007/s11307-019-01440-4) **Molecular Imaging and Biology** 2020 Dec;22(6):1469-1488 -- Pallast N, Wieters F, Nill M, Fink GR, Aswendt M. [Graph theoretical quantification of white matter reorganization after cortical stroke in mice. Neuroimage.](https://doi.org/10.1016/j.neuroimage.2020.116873) +- Pallast N, Wieters F, Nill M, Fink GR, Aswendt M. [Graph theoretical quantification of white matter reorganization after cortical stroke in mice. Neuroimage.](https://doi.org/10.1016/j.neuroimage.2020.116873) **NeuroImage** 2020 Aug 15;217:116873 -- Vogel S, Hoehn M, Aswendt M. [*In vivo* bioluminescence imaging to elucidate stem cell graft differentiation.](https://doi.org/10.4103/1673-5374.264449) +- Vogel S, Hoehn M, Aswendt M. [*In vivo* bioluminescence imaging to elucidate stem cell graft differentiation.](https://doi.org/10.4103/1673-5374.264449) **Neural Regeneration Research** 2020 Jan;15(1):61-62 ### 2019 - Goubran M, Leuze C, Hsueh B, Aswendt M, Ye L, Tian Q, Cheng MY, Crow A, Steinberg GK, McNab JA, Deisseroth K, Zeineh M. [Multimodal image registration and connectivity analysis for integration of connectomic data from microscopy to MRI.](https://doi.org/10.1038/s41467-019-13374-0) **Nature Communications** 2019 Dec 3;10(1):5504 -- Pallast N, Wieters F, Fink GR, Aswendt M. [Atlas-based imaging data analysis tool for quantitative mouse brain histology (AIDAhisto).](https://doi.org/10.1016/j.jneumeth.2019.108394) +- Pallast N, Wieters F, Fink GR, Aswendt M. [Atlas-based imaging data analysis tool for quantitative mouse brain histology (AIDAhisto).](https://doi.org/10.1016/j.jneumeth.2019.108394) **Journal of Neuroscience Methods** 2019 Oct 1;326:108394 -- Pallast N, Diedenhofen M, Blaschke S, Wieters F, Wiedermann D, Hoehn M, Fink GR, Aswendt M. [Processing Pipeline for Atlas-Based Imaging Data Analysis of Structural and Functional Mouse Brain MRI (AIDAmri).](https://doi.org/10.3389/fninf.2019.00042) +- Pallast N, Diedenhofen M, Blaschke S, Wieters F, Wiedermann D, Hoehn M, Fink GR, Aswendt M. [Processing Pipeline for Atlas-Based Imaging Data Analysis of Structural and Functional Mouse Brain MRI (AIDAmri).](https://doi.org/10.3389/fninf.2019.00042) **Frontiers in Neuroinformatics** 2019 Jun 4;13:42 -- Collmann FM, Pijnenburg R, Hamzei-Taj S, Minassian A, Folz-Donahue K, Kukat C, Aswendt M, Hoehn M. [Individual *in vivo* Profiles of Microglia Polarization After Stroke, Represented by the Genes iNOS and Ym1.](https://doi.org/10.3389/fimmu.2019.01236) +- Collmann FM, Pijnenburg R, Hamzei-Taj S, Minassian A, Folz-Donahue K, Kukat C, Aswendt M, Hoehn M. [Individual *in vivo* Profiles of Microglia Polarization After Stroke, Represented by the Genes iNOS and Ym1.](https://doi.org/10.3389/fimmu.2019.01236) **Frontiers in Immunology** 2019 Jun 4;10:1236 -- Apetz N, Kordys E, Simon M, Mang B, Aswendt M, Wiedermann D, Neumaier B, Drzezga A, Timmermann L, Endepols H. [Effects of subthalamic deep brain stimulation on striatal metabolic connectivity in a rat hemiparkinsonian model.](https://doi.org/10.1242/dmm.039065) +- Apetz N, Kordys E, Simon M, Mang B, Aswendt M, Wiedermann D, Neumaier B, Drzezga A, Timmermann L, Endepols H. [Effects of subthalamic deep brain stimulation on striatal metabolic connectivity in a rat hemiparkinsonian model.](https://doi.org/10.1242/dmm.039065) **Disease Models & Mechanisms** 2019 May 24;12(5):dmm039065 -- Vogel S, Schäfer C, Hess S, Folz-Donahue K, Nelles M, Minassian A, Schwarz MK, Kukat C, Ehrlich M, Zaehres H, Kloppenburg P, Hoehn M, Aswendt M. [The in vivo timeline of differentiation of engrafted human neural progenitor cells.](https://doi.org/10.1016/j.scr.2019.101429) +- Vogel S, Schäfer C, Hess S, Folz-Donahue K, Nelles M, Minassian A, Schwarz MK, Kukat C, Ehrlich M, Zaehres H, Kloppenburg P, Hoehn M, Aswendt M. [The in vivo timeline of differentiation of engrafted human neural progenitor cells.](https://doi.org/10.1016/j.scr.2019.101429) **Stem Cell Research** 2019 May;37:101429 -- Aswendt M, Vogel S, Schäfer C, Jathoul A, Pule M, Hoehn M. [Quantitative *in vivo* dual-color bioluminescence imaging in the mouse brain.](https://doi.org/10.1117/1.nph.6.2.025006) +- Aswendt M, Vogel S, Schäfer C, Jathoul A, Pule M, Hoehn M. [Quantitative *in vivo* dual-color bioluminescence imaging in the mouse brain.](https://doi.org/10.1117/1.nph.6.2.025006) **Neurophotonics** 2019 Apr;6(2):025006 ### 2018 - Ito M, Aswendt M, Lee AG, Ishizaka S, Cao Z, Wang EH, Levy SL, Smerin DL, McNab JA, Zeineh M, Leuze C, Goubran M, Cheng MY, Steinberg GK. -[RNA-Sequencing Analysis Revealed a Distinct Motor Cortex Transcriptome in Spontaneously Recovered Mice After Stroke.](https://doi.org/10.1161/strokeaha.118.021508) +[RNA-Sequencing Analysis Revealed a Distinct Motor Cortex Transcriptome in Spontaneously Recovered Mice After Stroke.](https://doi.org/10.1161/strokeaha.118.021508) **Stroke** 2018 Sep;49(9):2191-2199 -- Vogel S, Aswendt M, Nelles M, Henn N, Schneider G, Hoehn M. [Initial graft size and not the innate immune response limit survival of engrafted neural stem cells.](https://doi.org/10.1002/term.2497) +- Vogel S, Aswendt M, Nelles M, Henn N, Schneider G, Hoehn M. [Initial graft size and not the innate immune response limit survival of engrafted neural stem cells.](https://doi.org/10.1002/term.2497) **Tissue Engineering and Regenerative Medicine** 2018 Mar;12(3):784-793 -- Pallast N, Wieters F, Nill M, Fink GR, Aswendt M. [Cloud-based relational database for multimodal animal data.](https://doi.org/10.1093/database/bay124) +- Pallast N, Wieters F, Nill M, Fink GR, Aswendt M. [Cloud-based relational database for multimodal animal data.](https://doi.org/10.1093/database/bay124) **Database (Oxford)** 2018 Jan 1;2018:bay124 ### 2017 -- Aswendt M, Collmann FM, Hoehn M. [Neurobiological insights from bioluminescence imaging.](https://doi.org/10.18632/oncotarget.20302) +- Aswendt M, Collmann FM, Hoehn M. [Neurobiological insights from bioluminescence imaging.](https://doi.org/10.18632/oncotarget.20302) **Oncotarget** 2017 Aug 13;8(41):69198-69199 -- Leuze C, Aswendt M, Ferenczi E, Liu CW, Hsueh B, Goubran M, Tian Q, Steinberg G, Zeineh MM, Deisseroth K, McNab JA. [The separate effects of lipids and proteins on brain MRI contrast revealed through tissue clearing.](https://doi.org/10.1016/j.neuroimage.2017.04.021) +- Leuze C, Aswendt M, Ferenczi E, Liu CW, Hsueh B, Goubran M, Tian Q, Steinberg G, Zeineh MM, Deisseroth K, McNab JA. [The separate effects of lipids and proteins on brain MRI contrast revealed through tissue clearing.](https://doi.org/10.1016/j.neuroimage.2017.04.021) **NeuroImage** 2017 Aug 1;156:412-422 -- Adamczak J, Aswendt M, Kreutzer C, Rotheneichner P, Riou A, Selt M, Beyrau A, Uhlenküken U, Diedenhofen M, Nelles M, Aigner L, Couillard-Despres S, Hoehn M. [Neurogenesis upregulation on the healthy hemisphere after stroke enhances compensation for age-dependent decrease of basal neurogenesis.](https://doi.org/10.1016/j.nbd.2016.12.015) +- Adamczak J, Aswendt M, Kreutzer C, Rotheneichner P, Riou A, Selt M, Beyrau A, Uhlenküken U, Diedenhofen M, Nelles M, Aigner L, Couillard-Despres S, Hoehn M. [Neurogenesis upregulation on the healthy hemisphere after stroke enhances compensation for age-dependent decrease of basal neurogenesis.](https://doi.org/10.1016/j.nbd.2016.12.015) **Neurobiology of Disease** 2017 Mar;99:47-57 -- Aswendt M, Schwarz M, Abdelmoula WM, Dijkstra J, Dedeurwaerdere S. [Whole-Brain Microscopy Meets *In Vivo* Neuroimaging: Techniques, Benefits, and Limitations.](https://doi.org/10.1007/s11307-016-0988-z) +- Aswendt M, Schwarz M, Abdelmoula WM, Dijkstra J, Dedeurwaerdere S. [Whole-Brain Microscopy Meets *In Vivo* Neuroimaging: Techniques, Benefits, and Limitations.](https://doi.org/10.1007/s11307-016-0988-z) **Molecular Imaging and Biology** 2017 Feb;19(1):1-9