Load excel file as data frame #555
Workflow file for this run
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| # For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. | |
| # https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions | |
| on: [push, pull_request] | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| if: github.repository_owner != 'cloudyr' | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: windows-latest, r: 'release'} | |
| - {os: macOS-latest, r: 'release'} | |
| - {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| RSPM: ${{ matrix.config.rspm }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 # required for mirroring, see https://stackoverflow.com/a/64272409/474349 | |
| - name: Copy to Cloudyr | |
| if: github.repository_owner == 'Azure' && runner.os == 'Linux' && github.ref == 'refs/heads/master' | |
| env: | |
| token: "${{ secrets.ghPat }}" | |
| # git config hack required, see https://stackoverflow.com/q/64270867/474349 | |
| run: | | |
| export CLOUDYR_REPO=$(echo $GITHUB_REPOSITORY | sed "s/Azure/cloudyr/") | |
| git config -l | grep 'http\..*\.extraheader' | cut -d= -f1 | \ | |
| xargs -L1 git config --unset-all | |
| git push --prune https://token:$token@github.com/${CLOUDYR_REPO}.git +refs/remotes/origin/*:refs/heads/* +refs/tags/*:refs/tags/* | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Query dependencies | |
| run: | | |
| install.packages('remotes') | |
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
| shell: Rscript {0} | |
| - name: Cache R packages | |
| if: runner.os != 'Windows' | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
| # restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-5- | |
| - name: Install system dependencies | |
| if: runner.os == 'Linux' | |
| run: | | |
| while read -r cmd | |
| do | |
| eval sudo $cmd | |
| done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))') | |
| - name: Install dependencies | |
| run: | | |
| remotes::install_deps(dependencies = TRUE) | |
| remotes::install_cran(c("pkgbuild", "rcmdcheck", "drat")) | |
| shell: Rscript {0} | |
| - name: Check | |
| env: | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| _R_CHECK_FORCE_SUGGESTS_: false | |
| run: | | |
| pkg <- pkgbuild::build() | |
| rcmdcheck::rcmdcheck(pkg, args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check") | |
| shell: Rscript {0} | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: check | |
| - name: Update Cloudyr drat | |
| if: success() && github.repository_owner == 'Azure' && runner.os == 'Linux' && github.ref == 'refs/heads/master' | |
| env: | |
| token: "${{ secrets.ghPat }}" | |
| run: | | |
| cd .. | |
| export PKGBUILD_GZ=$(ls *.gz) | |
| mkdir drat | |
| cd drat | |
| git init | |
| git config user.email "dummy@example.com" | |
| git config user.name "Github Actions" | |
| git remote add upstream "https://token:$token@github.com/cloudyr/cloudyr.github.io.git" | |
| git fetch upstream | |
| git checkout master | |
| Rscript -e "drat::insertPackage('../$PKGBUILD_GZ', repodir='./drat')" | |
| git add --all | |
| git commit -m "add $PKGBUILD_GZ (build $GITHUB_RUN_NUMBER)" | |
| git push |