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<!DOCTYPE html>
<html lang="" xml:lang="">
<head>
<title>Accelerating Computational Reproducibility with the Social Science Reproduction Platform</title>
<meta charset="utf-8" />
<meta name="author" content="Fernando Hoces de la Guardia, BITSS" />
<script src="libs/header-attrs/header-attrs.js"></script>
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</head>
<body>
<textarea id="source">
class: center, middle, inverse, title-slide
# Accelerating Computational Reproducibility with the Social Science Reproduction Platform
## Metascience Conference
### Fernando Hoces de la Guardia, BITSS
### September 2021 | <a href="https://bitss.github.io/acre-slides-metascience2021/">slides</a>
---
background-image: url("Images/BITSSlogo.png"), url(Images/cega.png)
background-size: contain, 200px
background-position: 50% 100% , 100% 10%
count:true
#[BITSS](https://bitss.org)
<style>
.center2 {
margin: 0;
position: absolute;
top: 50%;
left: 50%;
-ms-transform: translate(-50%, -50%);
transform: translate(-50%, -50%);
}
pre.sourceCode {
max-height: 200px;
overflow-y: auto;
}
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position: inherit;
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.remark-slide-number .progress-bar-container {
position: absolute;
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display: block;
left: 0;
right: 0;
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.remark-slide-number .progress-bar {
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</style>
<style type="text/css">
# CSS for including pauses in printed PDF output (see bottom of lecture)
@media print {
.has-continuation {
display: block !important;
}
}
</style>
.pull-left[
The Berkeley Initiative for Transparency in the Social Sciences works to improve </br>the credibility of science by </br>
advancing transparency, </br> reproducibility, rigor, and </br> ethics in research and policy analysis.
.font130[**Core ACRe**]
Aleks Bogdanoski
Albert Chae
Fernando Hoces de la Guardia
Katie Hoeberling
Edward Miguel
Lars Vilhuber
]
.pull-right[ .right[
We are part of the Center for Effective Global Action ([CEGA](https://cega.berkeley.edu/)).
</br></br></br></br></br></br></br>
.font130[[**Many Others**](https://bitss.github.io/ACRE/contributions.html#list-of-contributors-guidelines-content-and-source-code)]
CEGA staff
Undergrad and Graduate RAs
Catalysts
Outside Collaborators
(Researchers, Programmers)
]]
---
count:false
# Motivation: Computational Reproducibility
<!--- https://imgflip.com/i/5lb28s -->
.pull-right[
.font130[
Clarebout Principle:
</br></br></br></br></br></br></br></br></br></br></br></br>
]
]
---
background-image: url("Images/iceberg.jpg")
background-size: 50%
background-position: 100% 50%
count:false
# Motivation: Computational Reproducibility
<!--- https://imgflip.com/i/5lb28s -->
.pull-right[
.font130[
"Clarebout Principle":
</br></br></br></br></br></br></br></br></br></br></br></br>
.right[
<cite> Buckheit and D.L. Donoho (1995, [2009](https://academiccommons.columbia.edu/doi/10.7916/D8QZ2MDS/download))</cite>
]
]
]
---
background-image: url("Images/iceberg.jpg")
background-size: 50%
background-position: 100% 50%
count:false
# Motivation: Computational Reproducibility
<!--- https://imgflip.com/i/5lb28s -->
.pull-left[
Every semester, graduate students around **the world** take an Empirical/Applied [`...`] course. A typical assignment consists of reproducing the results of a paper and, possibly, testing the robustness of its results.
| Stage | New Knowledge |
|:-----------------: |:------------------------------------------------------------: |
| </br></br> | |
| </br></br> | |
| </br></br> | |
| </br></br> | </br> |
]
.pull-right[
.font130[
"Clarebout Principle":
</br></br></br></br></br></br></br></br></br></br></br></br>
.right[
<cite> Buckheit and D.L. Donoho (1995, [2009](https://academiccommons.columbia.edu/doi/10.7916/D8QZ2MDS/download))</cite>
]
]
]
---
background-image: url("Images/iceberg.jpg")
background-size: 50%
background-position: 100% 50%
count:false
# Motivation: Computational Reproducibility
<!--- https://imgflip.com/i/5lb28s -->
.pull-left[
Every semester, graduate students around **the world** take an Empirical/Applied [`...`] course. A typical assignment consists of reproducing the results of a paper and, possibly, testing the robustness of its results.
| Stage | New Knowledge |
|:-----------------: |:------------------------------------------------------------: |
| Scope </br> (select and verify) | Data and code exist? |
| </br></br> | |
| </br></br> | |
| </br></br> | </br> |
]
.pull-right[
.font130[
"Clarebout Principle":
</br></br></br></br></br></br></br></br></br></br></br></br>
.right[
<cite> Buckheit and D.L. Donoho (1995, [2009](https://academiccommons.columbia.edu/doi/10.7916/D8QZ2MDS/download))</cite>
]
]
]
---
background-image: url("Images/iceberg.jpg")
background-size: 50%
background-position: 100% 50%
count:false
# Motivation: Computational Reproducibility
<!--- https://imgflip.com/i/5lb28s -->
.pull-left[
Every semester, graduate students around **the world** take an Empirical/Applied [`...`] course. A typical assignment consists of reproducing the results of a paper and, possibly, testing the robustness of its results.
| Stage | New Knowledge |
|:-----------------: |:------------------------------------------------------------: |
| Scope </br> (select and verify) | Data and code exist? |
| Assess | Degree of reproducibility for <br>specific part of the paper |
| </br></br> | |
| </br></br> | </br> |
]
.pull-right[
.font130[
"Clarebout Principle":
</br></br></br></br></br></br></br></br></br></br></br></br>
.right[
<cite> Buckheit and D.L. Donoho (1995, [2009](https://academiccommons.columbia.edu/doi/10.7916/D8QZ2MDS/download))</cite>
]
]
]
---
background-image: url("Images/iceberg.jpg")
background-size: 50%
background-position: 100% 50%
count:false
# Motivation: Computational Reproducibility
<!--- https://imgflip.com/i/5lb28s -->
.pull-left[
Every semester, graduate students around **the world** take an Empirical/Applied [`...`] course. A typical assignment consists of reproducing the results of a paper and, possibly, testing the robustness of its results.
| Stage | New Knowledge |
|:-----------------: |:------------------------------------------------------------: |
| Scope </br> (select and verify) | Data and code exist? |
| Assess | Degree of reproducibility for <br>specific part of the paper |
| Improve | E.g. fixed paths, libraries,<br>added missing files, etc. |
| </br></br> | </br> |
]
.pull-right[
.font130[
"Clarebout Principle":
</br></br></br></br></br></br></br></br></br></br></br></br>
.right[
<cite> Buckheit and D.L. Donoho (1995, [2009](https://academiccommons.columbia.edu/doi/10.7916/D8QZ2MDS/download))</cite>
]
]
]
---
background-image: url("Images/iceberg.jpg")
background-size: 50%
background-position: 100% 50%
count:true
# Motivation: Computational Reproducibility
<!--- https://imgflip.com/i/5lb28s -->
.pull-left[
Every semester, graduate students around **the world** take an Empirical/Applied [`...`] course. A typical assignment consists of reproducing the results of a paper and, possibly, testing the robustness of its results.
| Stage | New Knowledge |
|:-----------------: |:------------------------------------------------------------: |
| Scope </br> (select and verify) | Data and code exist? |
| Assess | Degree of reproducibility for <br>specific part of the paper |
| Improve | E.g. fixed paths, libraries,<br>added missing files, etc. |
| Test robustness | Results are robust to additional <br>specifications |
]
.pull-right[
.font130[
"Clarebout Principle":
</br></br></br></br></br></br></br></br></br></br></br></br>
.right[
<cite> Buckheit and D.L. Donoho (1995, [2009](https://academiccommons.columbia.edu/doi/10.7916/D8QZ2MDS/download))</cite>
]
]
]
---
# .font90[**A**ccelerating **C**omputational **Re**producibility: Framework]
## Beyond Binary Judgments
Reproductions can easily gravitate towards adversarial exchanges.
- Early career researchers (ECR) have incentives to emphasize unsuccessful reproductions
- Original authors have a more senior position and can use it to deter in-depth reproductions from ECRs.
- The media also focuses on eye-catching headlines
--
### Our approach:
We do not want to say
> "Paper X is (ir)reproducible"
--
We do want to say
> "Result Y in paper X has a high/low level of reproducibility according to several reproduction attempts. Moreover, improvements have been made to the original reproduction package, increasing its reproducibility to a higher level"
---
count:false
# .font90[**A**ccelerating **C**omputational **Re**producibility: Framework]
## Beyond Binary Judgments
Reproductions can easily gravitate towards adversarial exchanges.
- Early career researchers (ECR) have incentives to emphasize unsuccessful reproductions
- Original authors have a more senior position and can use it to deter in-depth reproductions from ECRs.
- The media also focuses on eye-catching headlines
### Our approach:
We do not want to say
> "Paper X is (ir)reproducible"
We do want to say
> "Result Y in paper X has a high/low **level** of reproducibility according to **several** reproduction attempts. Moreover, **improvements** have been made to the original reproduction package, **increasing** its reproducibility to a higher level"
---
count: true
background-image: url(Images/paper-claims.svg)
background-size: 610px
background-position: 75% 0%
# ACRe Framework
.pull-left[
.font100[
Each **reproduction attempt** is centered <br>
around scientific **claims** (following [SCORE](https://replicats.research.unimelb.edu.au)).
One paper can contain several claims.
Each claim may be supported by various </br>
**display items**: tables, figures & inline results.
A reproduction attempt is at the claim level, <br>
and reproducers must record their <br>
**specifications** of interest.
Key challenge: **standardization** of concepts <br>
and formats.
]
DI: Display Item
S: Specificaiton
]
.pull-right[
]
---
background-image: url(Images/home_page.png)
background-size: contain
count:true
.center[
# Demo: [socialsciencereproduction.org]()
]
---
background-image: url(Images/stages.svg)
background-size: contain
# Stages
---
background-image: url(Images/select.svg), url(Images/select_paper.png)
background-size: 400px, 700px
background-position: 95% 100%, 0% 10%
count:false
# Select a paper
---
background-image: url(Images/select.svg), url(Images/select_example.png), url(Images/select_paper.png)
background-size: 400px, 600px, 700px
background-position: 95% 100%, 100% 0%, 0% 10%
count:true
# Select a paper
---
background-image: url(Images/scope.svg), url(Images/scope_paper.png)
background-size: 400px, 700px
background-position: 95% 100%, 0% 10%
count:false
# Scope
---
background-image: url(Images/scope.svg), url(Images/scope_paper2.png) , url(Images/scope_paper.png)
background-size: 400px, 500px, 700px
background-position: 95% 100%, 90% 0%, 0% 10%
count:false
# Scope
---
background-image: url(Images/scope.svg), url(Images/scope_example.png), url(Images/scope_paper2.png) , url(Images/scope_paper.png)
background-size: 400px, 600px, 500px, 700px
background-position: 95% 100%, 100% 75%, 90% 0%, 0% 10%
count:true
# Scope
---
background-image: url(Images/assess.svg), url(Images/assess_paper1.png)
background-size: 400px, 120px
background-position: 95% 100%, 0% 10%
count:false
# Assess
---
background-image: url(Images/assess.svg), url(Images/assess_paper2.png)
background-size: 400px, 120px
background-position: 95% 100%, 0% 10%
count:false
# Assess
---
background-image: url(Images/assess.svg), url(Images/assess_example1.png), url(Images/assess_paper2.png)
background-size: 400px, 500px, 120px
background-position: 95% 100%, 15% 50%, 0% 10%
count:false
# Assess
---
background-image: url(Images/assess_example2.png), url(Images/assess.svg), url(Images/assess_example1.png) , url(Images/assess_paper2.png)
background-size: 600px, 400px, 500px, 120px
background-position: 100% 80%,95% 100%, 15% 50%, 0% 10%
count:true
# Assess
---
background-image: url(Images/impr_rob.svg)
background-size: contain
# Improvements & Robustness
### Three types of improvements:
.font130[
1. Improvements at the paper level
2. Improvements at the display-item level
3. Specific future improvements
]
<br><br><br><br><br><br>
## Two main parts for robustness:
.font130[
1. Increase the number of robustness checks
2. Justify the reasonableness of a specific test
]
---
background-image: url(Images/robust.svg)
background-size: 400px
background-position: 95% 95%
# Robustness & Reproducibility
.pull-left[
Robustness with level 1
<img src="Images/robustness_lvl0.svg" width="60%" style="display: block; margin: auto;" />
Robustness with levels 5-9
<img src="Images/robustness checks.svg" width="60%" style="display: block; margin: auto;" />
]
.pull-left[
Robustness with levels 2-4
<img src="Images/robustness_lvl2_4.svg" width="60%" style="display: block; margin: auto;" />
Robustness with level 10
<img src="Images/robustness_lvl10.svg" width="60%" style="display: block; margin: auto;" />
]
---
background-image: url(Images/completed_repro1.png)
background-size: 450px
background-position: 0% 0%
count:false
# Completed Reproduction: [Example](https://www.socialsciencereproduction.org/reproductions/40/published/index)
---
background-image: url(Images/completed_repro2.png), url(Images/completed_repro1.png)
background-size: 300px, 450px
background-position: 35% 0%, 0% 0%
count:false
# Completed Reproduction: [Example](https://www.socialsciencereproduction.org/reproductions/40/published/index)
---
background-image: url(Images/completed_repro3.png) ,url(Images/completed_repro2.png), url(Images/completed_repro1.png)
background-size: 600px , 300px, 450px
background-position: 100% 10%, 35% 0%, 0% 0%
count:true
# Completed Reproduction: [Example](https://www.socialsciencereproduction.org/reproductions/40/published/index)
.pull-right[
.font130[
<br><br><br><br><br><br><br>
- **Share it:** Original authors, instructors, other researchers, add it to your CV
- **Discuss it:** Discourse forum for reproductions
- **Cite it:** Reproduction DOI coming soon
]
]
---
background-image: url(Images/use1.png)
background-size: 500px
background-position: 0% 0%
count:false
# How Do I Get Started?
.center[
.font120[
&nbsp; &nbsp;&nbsp;&nbsp;&nbsp; [**Use it**](https://www.socialsciencereproduction.org) for your class <br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;or independent project
]
]
---
background-image: url(Images/use2.png), url(Images/use1.png)
background-size: 600px, 500px
background-position: 35% 100%, 0% 0%
count:false
# How Do I Get Started?
.center[
.font120[
&nbsp; &nbsp;&nbsp;&nbsp;&nbsp; [**Use it**](https://www.socialsciencereproduction.org) for your class <br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;or independent project
]
]
<br><br><br><br><br><br><br><br>
.font120[
Consult the <br> supporting <br>
[**guide**](https://bitss.github.io/ACRE/)
]
---
background-image: url(Images/use3.png) ,url(Images/use2.png), url(Images/use1.png)
background-size: 400px, 600px, 500px
background-position: 100% 0%, 35% 100%, 0% 0%
count:true
# How Do I Get Started?
.center[
.font120[
&nbsp; &nbsp;&nbsp;&nbsp;&nbsp; [**Use it**](https://www.socialsciencereproduction.org) for your class <br>
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;or independent project
]
]
<br><br><br><br><br><br><br><br>
.font120[
Consult the <br> supporting <br>
[**guide**](https://bitss.github.io/ACRE/)
]
.right[
.font120[
[**Ask**](https://forum.socialsciencereproduction.org) questions
]
]
---
class: inverse, center, middle
# .font140[ Thank You]
<html><div style='float:left'></div><hr color='#EB811B' size=1px width=100%></html>
.font190[
<acre@berkeley.edu>
]
</textarea>
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if (/^\\\((.|\s)+\\\)$/.test(text) || /^\\\[(.|\s)+\\\]$/.test(text) ||
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}
};
slideshow._releaseMath(document);
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