diff --git a/tools/bfconvert/Dockerfile b/tools/bfconvert/Dockerfile new file mode 100644 index 00000000..2689dc2e --- /dev/null +++ b/tools/bfconvert/Dockerfile @@ -0,0 +1,11 @@ +FROM ubuntu:20.04 + +RUN apt-get update && \ + ln -snf /usr/share/zoneinfo/$CONTAINER_TIMEZONE /etc/localtime && echo $CONTAINER_TIMEZONE > /etc/timezone + +RUN apt-get update && \ + apt-get install -y curl git openjdk-8-jdk unzip wget + +RUN wget https://downloads.openmicroscopy.org/bio-formats/6.7.0/artifacts/bftools.zip && \ + unzip bftools.zip && \ + cp bftools/* /usr/local/bin/ diff --git a/tools/bfconvert/bfconvert.xml b/tools/bfconvert/bfconvert.xml index adb29f76..728034f2 100644 --- a/tools/bfconvert/bfconvert.xml +++ b/tools/bfconvert/bfconvert.xml @@ -1,34 +1,45 @@ - + Convert image - bftools + bftools + quay.io/goeckslab/bftools:6.7.0 @@ -118,6 +129,26 @@ + + + + + + + + + + + + + + + + + + + + @@ -125,7 +156,7 @@ - + @@ -138,6 +169,14 @@ + + + + + + + + **What it does** diff --git a/tools/bfconvert/test-data/res.ome.tiff b/tools/bfconvert/test-data/res.ome.tiff new file mode 100644 index 00000000..a2f3def8 Binary files /dev/null and b/tools/bfconvert/test-data/res.ome.tiff differ