added citation and moved deprecated tools (#47)

* added citation and moved deprecated tools * updated copyright info
BMCV · Aug 3, 2022 · 6d6a6fd · 6d6a6fd
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diff --git a/tools/2d_auto_local_threshold/.shed.yml → ...d/tools/2d_auto_local_threshold/.shed.yml b/tools/2d_auto_local_threshold/.shed.yml → ...d/tools/2d_auto_local_threshold/.shed.yml
diff --git a/...o_local_threshold/auto_local_threshold.py → ...o_local_threshold/auto_local_threshold.py b/...o_local_threshold/auto_local_threshold.py → ...o_local_threshold/auto_local_threshold.py
diff --git a/..._local_threshold/auto_local_threshold.xml → ..._local_threshold/auto_local_threshold.xml b/..._local_threshold/auto_local_threshold.xml → ..._local_threshold/auto_local_threshold.xml
diff --git a/...2d_auto_local_threshold/test-data/out.tif → ...2d_auto_local_threshold/test-data/out.tif b/...2d_auto_local_threshold/test-data/out.tif → ...2d_auto_local_threshold/test-data/out.tif
diff --git a/...auto_local_threshold/test-data/sample.tif → ...auto_local_threshold/test-data/sample.tif b/...auto_local_threshold/test-data/sample.tif → ...auto_local_threshold/test-data/sample.tif
diff --git a/tools/landmark_registration_ls/.shed.yml → .../tools/landmark_registration_ls/.shed.yml b/tools/landmark_registration_ls/.shed.yml → .../tools/landmark_registration_ls/.shed.yml
diff --git a/...gistration_ls/landmark_registration_ls.py → ...gistration_ls/landmark_registration_ls.py b/...gistration_ls/landmark_registration_ls.py → ...gistration_ls/landmark_registration_ls.py
diff --git a/...istration_ls/landmark_registration_ls.xml → ...istration_ls/landmark_registration_ls.xml b/...istration_ls/landmark_registration_ls.xml → ...istration_ls/landmark_registration_ls.xml
diff --git a/...ark_registration_ls/test-data/points1.tsv → ...ark_registration_ls/test-data/points1.tsv b/...ark_registration_ls/test-data/points1.tsv → ...ark_registration_ls/test-data/points1.tsv
diff --git a/...ark_registration_ls/test-data/points2.tsv → ...ark_registration_ls/test-data/points2.tsv b/...ark_registration_ls/test-data/points2.tsv → ...ark_registration_ls/test-data/points2.tsv
diff --git a/...ndmark_registration_ls/test-data/tmat.tsv → ...ndmark_registration_ls/test-data/tmat.tsv b/...ndmark_registration_ls/test-data/tmat.tsv → ...ndmark_registration_ls/test-data/tmat.tsv
diff --git a/tools/landmark_registration/landmark_registration.py b/tools/landmark_registration/landmark_registration.py
@@ -1,5 +1,5 @@
 """
-Copyright 2017-2022 Biomedical Computer Vision Group, Heidelberg University.
+Copyright 2017-2022 Biomedical Computer Vision Group & Core Facility Platform Mannheim, Heidelberg University.
 
 Distributed under the MIT license.
 See file LICENSE for detail or copy at https://opensource.org/licenses/MIT

diff --git a/tools/landmark_registration/landmark_registration.xml b/tools/landmark_registration/landmark_registration.xml
@@ -1,4 +1,4 @@
-<tool id="ip_landmark_registration" name="Landmark Registration" version="0.0.5" profile="20.05">
+<tool id="ip_landmark_registration" name="Landmark Registration" version="0.1.0" profile="20.05">
     <description>estimates the affine transformation matrix or performs piecewise affine transformation</description>
     <requirements>
         <requirement type="package" version="0.18.1">scikit-image</requirement>
@@ -74,6 +74,7 @@
     About the format of landmark/point coordinates in the input TSV table: Columns with header "x" and "y" are for x- and y-coordinate, respectively.
     </help>
     <citations>
+        <citation type="doi">10.3390/cells11152390</citation>
         <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
     </citations>
 </tool>