diff --git a/tools/2d_auto_local_threshold/.shed.yml b/deprecated/tools/2d_auto_local_threshold/.shed.yml similarity index 100% rename from tools/2d_auto_local_threshold/.shed.yml rename to deprecated/tools/2d_auto_local_threshold/.shed.yml diff --git a/tools/2d_auto_local_threshold/auto_local_threshold.py b/deprecated/tools/2d_auto_local_threshold/auto_local_threshold.py similarity index 100% rename from tools/2d_auto_local_threshold/auto_local_threshold.py rename to deprecated/tools/2d_auto_local_threshold/auto_local_threshold.py diff --git a/tools/2d_auto_local_threshold/auto_local_threshold.xml b/deprecated/tools/2d_auto_local_threshold/auto_local_threshold.xml similarity index 100% rename from tools/2d_auto_local_threshold/auto_local_threshold.xml rename to deprecated/tools/2d_auto_local_threshold/auto_local_threshold.xml diff --git a/tools/2d_auto_local_threshold/test-data/out.tif b/deprecated/tools/2d_auto_local_threshold/test-data/out.tif similarity index 100% rename from tools/2d_auto_local_threshold/test-data/out.tif rename to deprecated/tools/2d_auto_local_threshold/test-data/out.tif diff --git a/tools/2d_auto_local_threshold/test-data/sample.tif b/deprecated/tools/2d_auto_local_threshold/test-data/sample.tif similarity index 100% rename from tools/2d_auto_local_threshold/test-data/sample.tif rename to deprecated/tools/2d_auto_local_threshold/test-data/sample.tif diff --git a/tools/landmark_registration_ls/.shed.yml b/deprecated/tools/landmark_registration_ls/.shed.yml similarity index 100% rename from tools/landmark_registration_ls/.shed.yml rename to deprecated/tools/landmark_registration_ls/.shed.yml diff --git a/tools/landmark_registration_ls/landmark_registration_ls.py b/deprecated/tools/landmark_registration_ls/landmark_registration_ls.py similarity index 100% rename from tools/landmark_registration_ls/landmark_registration_ls.py rename to deprecated/tools/landmark_registration_ls/landmark_registration_ls.py diff --git a/tools/landmark_registration_ls/landmark_registration_ls.xml b/deprecated/tools/landmark_registration_ls/landmark_registration_ls.xml similarity index 100% rename from tools/landmark_registration_ls/landmark_registration_ls.xml rename to deprecated/tools/landmark_registration_ls/landmark_registration_ls.xml diff --git a/tools/landmark_registration_ls/test-data/points1.tsv b/deprecated/tools/landmark_registration_ls/test-data/points1.tsv similarity index 100% rename from tools/landmark_registration_ls/test-data/points1.tsv rename to deprecated/tools/landmark_registration_ls/test-data/points1.tsv diff --git a/tools/landmark_registration_ls/test-data/points2.tsv b/deprecated/tools/landmark_registration_ls/test-data/points2.tsv similarity index 100% rename from tools/landmark_registration_ls/test-data/points2.tsv rename to deprecated/tools/landmark_registration_ls/test-data/points2.tsv diff --git a/tools/landmark_registration_ls/test-data/tmat.tsv b/deprecated/tools/landmark_registration_ls/test-data/tmat.tsv similarity index 100% rename from tools/landmark_registration_ls/test-data/tmat.tsv rename to deprecated/tools/landmark_registration_ls/test-data/tmat.tsv diff --git a/tools/landmark_registration/landmark_registration.py b/tools/landmark_registration/landmark_registration.py index 7dd83b75..c71d5045 100644 --- a/tools/landmark_registration/landmark_registration.py +++ b/tools/landmark_registration/landmark_registration.py @@ -1,5 +1,5 @@ """ -Copyright 2017-2022 Biomedical Computer Vision Group, Heidelberg University. +Copyright 2017-2022 Biomedical Computer Vision Group & Core Facility Platform Mannheim, Heidelberg University. Distributed under the MIT license. See file LICENSE for detail or copy at https://opensource.org/licenses/MIT diff --git a/tools/landmark_registration/landmark_registration.xml b/tools/landmark_registration/landmark_registration.xml index 68cf138c..2fc9354a 100644 --- a/tools/landmark_registration/landmark_registration.xml +++ b/tools/landmark_registration/landmark_registration.xml @@ -1,4 +1,4 @@ - + estimates the affine transformation matrix or performs piecewise affine transformation scikit-image @@ -74,6 +74,7 @@ About the format of landmark/point coordinates in the input TSV table: Columns with header "x" and "y" are for x- and y-coordinate, respectively. + 10.3390/cells11152390 10.1016/j.jbiotec.2017.07.019