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Pre commit m3 fixups #535

Merged
merged 15 commits into from
Jun 5, 2024
Merged

Pre commit m3 fixups #535

merged 15 commits into from
Jun 5, 2024

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hjmjohnson
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Update for ITK 5.4.0

@hjmjohnson hjmjohnson self-assigned this Jun 1, 2024
@hjmjohnson hjmjohnson marked this pull request as draft June 1, 2024 14:03
hjmjohnson added 13 commits June 3, 2024 08:32
@hjmjohnson
COMP: ITKv5.4.0 requires C++17 features.
486801d 
Update ITK to 5.4.0
Update SlicerExecutionModel for ITK changes.
Update ANTS for ITK Changes
@hjmjohnson
ENH: Update to newer versions of python packages
24e55ae 
 - Update to match more robust black formatting rulesets.
 - Update default black to latest version checking in pre-commit
@hjmjohnson
ENH: Checks for toml xml yaml
a031f88
@hjmjohnson
ENH: Add shabang for executable files, remove execute permissions
2d6d8f3
@hjmjohnson
ENH: Fixed end-of-file inconsistencies.
52ca5de
@hjmjohnson
ENH: Enforce rigors end of line symantics
1fc22bb 
fix end of files.........................................................Failed
mixed line ending........................................................Failed
trim trailing whitespace.................................................Failed
@hjmjohnson
ENH: Adding python tests naming consistency.
02a87fb
@hjmjohnson
ENH: forbid new submodules
4274f25
@hjmjohnson
ENH: Initial ruff code fixes for safe code updates.
12cb6de
@hjmjohnson
ENH: Code cleanups for comparison to bool values
41078a5
@hjmjohnson
ENH: Modernize codebase with pyupgrade to 3.10 syntax recommendations.
fdd3b90
@hjmjohnson
ENH: Prepratory shell check comments that will need more work before …
8a07609 
…using.
@hjmjohnson
ENH: Need slightly larger tolerance for m3 native builds
f66c760 
The test tolerance needed to be slightly larger for processing on m3
mac with -mtune=native -march=native.
@hjmjohnson hjmjohnson force-pushed the pre-commit-m3-fixups branch from 4a29d0e to f66c760 Compare June 3, 2024 17:23
@hjmjohnson
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└─[130] NSLOTS=1 ctest -j 4
Test project /Users/johnsonhj/src/BT-bld/BRAINSTools-Release-EPRelease-build
Start 14: BRAINSFitTest_BSplineOnlyRescaleHeadMasks
Start 51: BRAINSABCSmallTest
Start 73: BRAINSAlignMSPTest_T1
Start 83: BCDTest_ForceRPPoint
1/246 Test #14: BRAINSFitTest_BSplineOnlyRescaleHeadMasks .................... Passed 28.77 sec
Start 87: BCDTest_ForcePCPoint
2/246 Test #73: BRAINSAlignMSPTest_T1 ........................................ Passed 36.28 sec
Start 89: BCDTest_ForceVN4Point
3/246 Test #51: BRAINSABCSmallTest ........................................... Passed 444.25 sec
Start 91: BCDTest_acLowerBound
4/246 Test #83: BCDTest_ForceRPPoint ......................................... Passed 953.96 sec
Start 84: chk_BCDTest_ForceRPPoint
5/246 Test #84: chk_BCDTest_ForceRPPoint ..................................... Passed 0.04 sec
Start 92: BCDTest_backgroundValue
6/246 Test #87: BCDTest_ForcePCPoint ......................................... Passed 1048.61 sec
Start 88: chk_BCDTest_ForcePCPoint
7/246 Test #88: chk_BCDTest_ForcePCPoint ..................................... Passed 0.02 sec
Start 93: BCDTest_cutOutHeadInOutputResampledVolume
8/246 Test #89: BCDTest_ForceVN4Point ........................................ Passed 1044.23 sec
Start 90: chk_BCDTest_ForceVN4Point
9/246 Test #90: chk_BCDTest_ForceVN4Point .................................... Passed 0.01 sec
Start 94: BCDTest_cutOutHeadInOutputVolume
10/246 Test #91: BCDTest_acLowerBound ......................................... Passed 1179.96 sec
Start 95: BCDTest_interpolationMode
11/246 Test #92: BCDTest_backgroundValue ...................................... Passed 1181.97 sec
Start 96: BCDTest_mspLevel
12/246 Test #94: BCDTest_cutOutHeadInOutputVolume ............................. Passed 1175.28 sec
Start 97: BCDTest_otsuThreshold
13/246 Test #93: BCDTest_cutOutHeadInOutputResampledVolume .................... Passed 1179.86 sec
Start 98: BCDTest_outputUntransformedClippedVolume
14/246 Test #95: BCDTest_interpolationMode .................................... Passed 1167.48 sec
Start 99: BCDTest_rac
15/246 Test #96: BCDTest_mspLevel ............................................. Passed 1170.22 sec
Start 100: BCDTest_rescaleIntensity
16/246 Test #97: BCDTest_otsuThreshold ........................................ Passed 1173.79 sec
Start 101: BCDTest_rescaleIntensityRange
17/246 Test #98: BCDTest_outputUntransformedClippedVolume ..................... Passed 1172.37 sec
Start 102: BCDTest_rmpj
18/246 Test #99: BCDTest_rac .................................................. Passed 1172.50 sec
Start 103: BCDTest_rpc
19/246 Test #100: BCDTest_rescaleIntensity ..................................... Passed 1183.37 sec
Start 104: BCDTest_rVN4
20/246 Test #101: BCDTest_rescaleIntensityRange ................................ Passed 1167.67 sec
Start 105: BCDTest_rVN4-rpc-rac-rmpj
21/246 Test #102: BCDTest_rmpj ................................................. Passed 1183.98 sec
Start 106: BCDTest_T1_outputResampledVolume
22/246 Test #103: BCDTest_rpc .................................................. Passed 1201.70 sec
Start 107: BCDTest_T1_outputVolume
23/246 Test #104: BCDTest_rVN4 ................................................. Passed 1164.54 sec
Start 108: BCDTest_trimRescaledIntensities
24/246 Test #106: BCDTest_T1_outputResampledVolume ............................. Passed 1162.15 sec
Start 109: BCDTest_writeBranded2DImage
25/246 Test #105: BCDTest_rVN4-rpc-rac-rmpj .................................... Passed 1229.07 sec
Start 130: BRAINSTransformConvertMakeTestFilesTest
26/246 Test #130: BRAINSTransformConvertMakeTestFilesTest ...................... Passed 0.26 sec
Start 131: ConvertVersorRigidToVersorRigidInfloat
27/246 Test #131: ConvertVersorRigidToVersorRigidInfloat ....................... Passed 0.15 sec
Start 53: ccvnt_to_png
28/246 Test #53: ccvnt_to_png ................................................. Passed 0.09 sec
Start 55: ccvnt_to_analyze75
29/246 Test #55: ccvnt_to_analyze75 ........................................... Passed 0.03 sec
Start 58: ccvnt_to_gipl
30/246 Test #58: ccvnt_to_gipl ................................................ Passed 0.02 sec
Start 135: ConvertVersorRigidToScaleVersorInfloat
31/246 Test #135: ConvertVersorRigidToScaleVersorInfloat ....................... Passed 0.06 sec
Start 186: ConvertScaleVersorToAffineInfloat
32/246 Test #186: ConvertScaleVersorToAffineInfloat ............................ Passed 0.06 sec
Start 231: ConvertAffineToAffineInfloat
33/246 Test #231: ConvertAffineToAffineInfloat ................................. Passed 0.06 sec
Start 177: ConvertScaleVersorToScaleVersorInfloat
34/246 Test #177: ConvertScaleVersorToScaleVersorInfloat ....................... Passed 0.06 sec
Start 163: ConvertVersorRigidToScaleSkewVersorIndouble
35/246 Test #163: ConvertVersorRigidToScaleSkewVersorIndouble .................. Passed 0.06 sec
Start 154: ConvertVersorRigidToVersorRigidIndouble
36/246 Test #154: ConvertVersorRigidToVersorRigidIndouble ...................... Passed 0.06 sec
Start 181: ConvertScaleVersorToScaleSkewVersorInfloat
37/246 Test #181: ConvertScaleVersorToScaleSkewVersorInfloat ................... Passed 0.07 sec
Start 195: ConvertScaleVersorToScaleVersorIndouble
38/246 Test #195: ConvertScaleVersorToScaleVersorIndouble ...................... Passed 0.06 sec
Start 199: ConvertScaleVersorToScaleSkewVersorIndouble
39/246 Test #199: ConvertScaleVersorToScaleSkewVersorIndouble .................. Passed 0.06 sec
Start 204: ConvertScaleVersorToAffineIndouble
40/246 Test #204: ConvertScaleVersorToAffineIndouble ........................... Passed 0.06 sec
Start 145: ConvertVersorRigidToAffineInfloat
41/246 Test #145: ConvertVersorRigidToAffineInfloat ............................ Passed 0.06 sec
Start 239: ConvertAffineToAffineIndouble
42/246 Test #239: ConvertAffineToAffineIndouble ................................ Passed 0.06 sec
Start 222: ConvertScaleSkewVersorToAffineIndouble
43/246 Test #222: ConvertScaleSkewVersorToAffineIndouble ....................... Passed 0.06 sec
Start 168: ConvertVersorRigidToAffineIndouble
44/246 Test #168: ConvertVersorRigidToAffineIndouble ........................... Passed 0.06 sec
Start 213: ConvertScaleSkewVersorToAffineInfloat
45/246 Test #213: ConvertScaleSkewVersorToAffineInfloat ........................ Passed 0.06 sec
Start 158: ConvertVersorRigidToScaleVersorIndouble
46/246 Test #158: ConvertVersorRigidToScaleVersorIndouble ...................... Passed 0.05 sec
Start 140: ConvertVersorRigidToScaleSkewVersorInfloat
47/246 Test #140: ConvertVersorRigidToScaleSkewVersorInfloat ................... Passed 0.06 sec
Start 54: ccvnt_to_tiff
48/246 Test #54: ccvnt_to_tiff ................................................ Passed 0.03 sec
Start 57: ccvnt_to_nrrd_float
49/246 Test #57: ccvnt_to_nrrd_float .......................................... Passed 0.03 sec
Start 59: ccvnt_to_nifti
50/246 Test #59: ccvnt_to_nifti ............................................... Passed 0.03 sec
Start 218: ConvertScaleSkewVersorToDisplacementFieldInfloat
51/246 Test #218: ConvertScaleSkewVersorToDisplacementFieldInfloat ............. Passed 0.02 sec
Start 150: ConvertVersorRigidToDisplacementFieldInfloat
52/246 Test #150: ConvertVersorRigidToDisplacementFieldInfloat ................. Passed 0.03 sec
Start 235: ConvertAffineToDisplacementFieldInfloat
53/246 Test #235: ConvertAffineToDisplacementFieldInfloat ...................... Passed 0.03 sec
Start 191: ConvertScaleVersorToDisplacementFieldInfloat
54/246 Test #191: ConvertScaleVersorToDisplacementFieldInfloat ................. Passed 0.03 sec
Start 227: ConvertScaleSkewVersorToDisplacementFieldIndouble
55/246 Test #227: ConvertScaleSkewVersorToDisplacementFieldIndouble ............ Passed 0.02 sec
Start 243: ConvertAffineToDisplacementFieldIndouble
56/246 Test #243: ConvertAffineToDisplacementFieldIndouble ..................... Passed 0.02 sec
Start 209: ConvertScaleVersorToDisplacementFieldIndouble
57/246 Test #209: ConvertScaleVersorToDisplacementFieldIndouble ................ Passed 0.02 sec
Start 173: ConvertVersorRigidToDisplacementFieldIndouble
58/246 Test #173: ConvertVersorRigidToDisplacementFieldIndouble ................ Passed 0.02 sec
Start 110: BCDTestForLandmarkCompare
59/246 Test #107: BCDTest_T1_outputVolume ...................................... Passed 1169.12 sec
Start 85: BCDTest_ForceACPoint
60/246 Test #108: BCDTest_trimRescaledIntensities .............................. Passed 1174.77 sec
Start 80: landmarksConstellationAlignerTest
61/246 Test #80: landmarksConstellationAlignerTest ............................ Passed 0.13 sec
Start 78: insertMidACPCpointTest
62/246 Test #78: insertMidACPCpointTest ....................................... Passed 0.07 sec
Start 132: ResampleWSourceVersorRigidVersorRigidfloat
63/246 Test #132: ResampleWSourceVersorRigidVersorRigidfloat ................... Passed 0.15 sec
Start 184: ResampleWTargetScaleVersorScaleSkewVersorfloat
64/246 Test #184: ResampleWTargetScaleVersorScaleSkewVersorfloat ............... Passed 0.06 sec
Start 229: ResampleWTargetScaleSkewVersorDisplacementFielddouble
65/246 Test #229: ResampleWTargetScaleSkewVersorDisplacementFielddouble ........ Passed 0.06 sec
Start 233: ResampleWTargetAffineAffinefloat
66/246 Test #233: ResampleWTargetAffineAffinefloat ............................. Passed 0.06 sec
Start 156: ResampleWTargetVersorRigidVersorRigiddouble
67/246 Test #156: ResampleWTargetVersorRigidVersorRigiddouble .................. Passed 0.06 sec
Start 196: ResampleWSourceScaleVersorScaleVersordouble
68/246 Test #196: ResampleWSourceScaleVersorScaleVersordouble .................. Passed 0.06 sec
Start 151: ResampleWSourceVersorRigidDisplacementFieldfloat
69/246 Test #151: ResampleWSourceVersorRigidDisplacementFieldfloat ............. Passed 0.05 sec
Start 241: ResampleWTargetAffineAffinedouble
70/246 Test #241: ResampleWTargetAffineAffinedouble ............................ Passed 0.06 sec
Start 224: ResampleWSourceScaleSkewVersorAffinedouble
71/246 Test #224: ResampleWSourceScaleSkewVersorAffinedouble ................... Passed 0.05 sec
Start 216: ResampleWTargetScaleSkewVersorAffinefloat
72/246 Test #216: ResampleWTargetScaleSkewVersorAffinefloat .................... Passed 0.05 sec
Start 133: ResampleWTargetVersorRigidVersorRigidfloat
73/246 Test #133: ResampleWTargetVersorRigidVersorRigidfloat ................... Passed 0.05 sec
Start 192: ResampleWSourceScaleVersorDisplacementFieldfloat
74/246 Test #192: ResampleWSourceScaleVersorDisplacementFieldfloat ............. Passed 0.05 sec
Start 202: ResampleWTargetScaleVersorScaleSkewVersordouble
75/246 Test #202: ResampleWTargetScaleVersorScaleSkewVersordouble .............. Passed 0.05 sec
Start 232: ResampleWSourceAffineAffinefloat
76/246 Test #232: ResampleWSourceAffineAffinefloat ............................. Passed 0.05 sec
Start 193: ResampleWTargetScaleVersorDisplacementFieldfloat
77/246 Test #193: ResampleWTargetScaleVersorDisplacementFieldfloat ............. Passed 0.05 sec
Start 142: ResampleWSourceVersorRigidScaleSkewVersorfloat
78/246 Test #142: ResampleWSourceVersorRigidScaleSkewVersorfloat ............... Passed 0.05 sec
Start 215: ResampleWSourceScaleSkewVersorAffinefloat
79/246 Test #215: ResampleWSourceScaleSkewVersorAffinefloat .................... Passed 0.05 sec
Start 138: ResampleWTargetVersorRigidScaleVersorfloat
80/246 Test #138: ResampleWTargetVersorRigidScaleVersorfloat ................... Passed 0.05 sec
Start 228: ResampleWSourceScaleSkewVersorDisplacementFielddouble
81/246 Test #228: ResampleWSourceScaleSkewVersorDisplacementFielddouble ........ Passed 0.05 sec
Start 148: ResampleWTargetVersorRigidAffinefloat
82/246 Test #148: ResampleWTargetVersorRigidAffinefloat ........................ Passed 0.05 sec
Start 225: ResampleWTargetScaleSkewVersorAffinedouble
83/246 Test #225: ResampleWTargetScaleSkewVersorAffinedouble ................... Passed 0.05 sec
Start 137: ResampleWSourceVersorRigidScaleVersorfloat
84/246 Test #137: ResampleWSourceVersorRigidScaleVersorfloat ................... Passed 0.05 sec
Start 237: ResampleWTargetAffineDisplacementFieldfloat
85/246 Test #237: ResampleWTargetAffineDisplacementFieldfloat .................. Passed 0.05 sec
Start 143: ResampleWTargetVersorRigidScaleSkewVersorfloat
86/246 Test #143: ResampleWTargetVersorRigidScaleSkewVersorfloat ............... Passed 0.05 sec
Start 155: ResampleWSourceVersorRigidVersorRigiddouble
87/246 Test #155: ResampleWSourceVersorRigidVersorRigiddouble .................. Passed 0.05 sec
Start 178: ResampleWSourceScaleVersorScaleVersorfloat
88/246 Test #178: ResampleWSourceScaleVersorScaleVersorfloat ................... Passed 0.05 sec
Start 219: ResampleWSourceScaleSkewVersorDisplacementFieldfloat
89/246 Test #219: ResampleWSourceScaleSkewVersorDisplacementFieldfloat ......... Passed 0.05 sec
Start 210: ResampleWSourceScaleVersorDisplacementFielddouble
90/246 Test #210: ResampleWSourceScaleVersorDisplacementFielddouble ............ Passed 0.05 sec
Start 236: ResampleWSourceAffineDisplacementFieldfloat
91/246 Test #236: ResampleWSourceAffineDisplacementFieldfloat .................. Passed 0.05 sec
Start 188: ResampleWSourceScaleVersorAffinefloat
92/246 Test #188: ResampleWSourceScaleVersorAffinefloat ........................ Passed 0.05 sec
Start 160: ResampleWSourceVersorRigidScaleVersordouble
93/246 Test #160: ResampleWSourceVersorRigidScaleVersordouble .................. Passed 0.05 sec
Start 174: ResampleWSourceVersorRigidDisplacementFielddouble
94/246 Test #174: ResampleWSourceVersorRigidDisplacementFielddouble ............ Passed 0.05 sec
Start 197: ResampleWTargetScaleVersorScaleVersordouble
95/246 Test #197: ResampleWTargetScaleVersorScaleVersordouble .................. Passed 0.05 sec
Start 152: ResampleWTargetVersorRigidDisplacementFieldfloat
96/246 Test #152: ResampleWTargetVersorRigidDisplacementFieldfloat ............. Passed 0.05 sec
Start 147: ResampleWSourceVersorRigidAffinefloat
97/246 Test #147: ResampleWSourceVersorRigidAffinefloat ........................ Passed 0.05 sec
Start 165: ResampleWSourceVersorRigidScaleSkewVersordouble
98/246 Test #165: ResampleWSourceVersorRigidScaleSkewVersordouble .............. Passed 0.05 sec
Start 170: ResampleWSourceVersorRigidAffinedouble
99/246 Test #170: ResampleWSourceVersorRigidAffinedouble ....................... Passed 0.05 sec
Start 171: ResampleWTargetVersorRigidAffinedouble
100/246 Test #171: ResampleWTargetVersorRigidAffinedouble ....................... Passed 0.05 sec
Start 244: ResampleWSourceAffineDisplacementFielddouble
101/246 Test #244: ResampleWSourceAffineDisplacementFielddouble ................. Passed 0.05 sec
Start 211: ResampleWTargetScaleVersorDisplacementFielddouble
102/246 Test #211: ResampleWTargetScaleVersorDisplacementFielddouble ............ Passed 0.05 sec
Start 161: ResampleWTargetVersorRigidScaleVersordouble
103/246 Test #161: ResampleWTargetVersorRigidScaleVersordouble .................. Passed 0.05 sec
Start 183: ResampleWSourceScaleVersorScaleSkewVersorfloat
104/246 Test #183: ResampleWSourceScaleVersorScaleSkewVersorfloat ............... Passed 0.05 sec
Start 179: ResampleWTargetScaleVersorScaleVersorfloat
105/246 Test #179: ResampleWTargetScaleVersorScaleVersorfloat ................... Passed 0.05 sec
Start 175: ResampleWTargetVersorRigidDisplacementFielddouble
106/246 Test #175: ResampleWTargetVersorRigidDisplacementFielddouble ............ Passed 0.05 sec
Start 207: ResampleWTargetScaleVersorAffinedouble
107/246 Test #207: ResampleWTargetScaleVersorAffinedouble ....................... Passed 0.05 sec
Start 166: ResampleWTargetVersorRigidScaleSkewVersordouble
108/246 Test #166: ResampleWTargetVersorRigidScaleSkewVersordouble .............. Passed 0.05 sec
Start 240: ResampleWSourceAffineAffinedouble
109/246 Test #240: ResampleWSourceAffineAffinedouble ............................ Passed 0.05 sec
Start 189: ResampleWTargetScaleVersorAffinefloat
110/246 Test #189: ResampleWTargetScaleVersorAffinefloat ........................ Passed 0.05 sec
Start 220: ResampleWTargetScaleSkewVersorDisplacementFieldfloat
111/246 Test #220: ResampleWTargetScaleSkewVersorDisplacementFieldfloat ......... Passed 0.05 sec
Start 206: ResampleWSourceScaleVersorAffinedouble
112/246 Test #206: ResampleWSourceScaleVersorAffinedouble ....................... Passed 0.05 sec
Start 245: ResampleWTargetAffineDisplacementFielddouble
113/246 Test #245: ResampleWTargetAffineDisplacementFielddouble ................. Passed 0.05 sec
Start 201: ResampleWSourceScaleVersorScaleSkewVersordouble
114/246 Test #201: ResampleWSourceScaleVersorScaleSkewVersordouble .............. Passed 0.05 sec
Start 63: ccvnt_from_nrrd_float
115/246 Test #63: ccvnt_from_nrrd_float ........................................ Passed 0.08 sec
Start 64: ccvnt_from_gipl
116/246 Test #64: ccvnt_from_gipl .............................................. Passed 0.03 sec
Start 60: ccvnt_from_png
117/246 Test #60: ccvnt_from_png ............................................... Passed 0.02 sec
Start 62: ccvnt_from_analyze75
118/246 Test #62: ccvnt_from_analyze75 ......................................... Passed 0.03 sec
Start 61: ccvnt_from_tiff
119/246 Test #61: ccvnt_from_tiff .............................................. Passed 0.03 sec
Start 65: ccvnt_from_nifti
120/246 Test #65: ccvnt_from_nifti ............................................. Passed 0.02 sec
Start 19: BRAINSFitTest_RigidRotGeomNoMasks
121/246 Test #19: BRAINSFitTest_RigidRotGeomNoMasks ............................ Passed 2.56 sec
Start 23: BRAINSFitTest_RigidRotationNoMasks
122/246 Test #23: BRAINSFitTest_RigidRotationNoMasks ........................... Passed 2.16 sec
Start 18: BRAINSFitTest_RigidMedianRotationNoMasks
123/246 Test #18: BRAINSFitTest_RigidMedianRotationNoMasks ..................... Passed 1.27 sec
Start 50: ValidateBRAINSResampleTest3_nii
124/246 Test #50: ValidateBRAINSResampleTest3_nii .............................. Passed 0.60 sec
Start 72: BRAINSEyeDetectorTest_T1
125/246 Test #72: BRAINSEyeDetectorTest_T1 ..................................... Passed 9.49 sec
Start 36: BRAINSFitTest_BSplineScaleRotationHeadMasksUShort
126/246 Test #36: BRAINSFitTest_BSplineScaleRotationHeadMasksUShort ............ Passed 3.83 sec
Start 25: BRAINSFitTest_ScaleRotationRescaleHeadMasksNoInit
127/246 Test #25: BRAINSFitTest_ScaleRotationRescaleHeadMasksNoInit ............ Passed 2.47 sec
Start 16: BRAINSFitTest_BSplineScaleRotationHistogramHeadMasks
128/246 Test #16: BRAINSFitTest_BSplineScaleRotationHistogramHeadMasks ......... Passed 2.58 sec
Start 4: FindCenterOfBrainTest
129/246 Test #4: FindCenterOfBrainTest ........................................ Passed 3.70 sec
Start 44: BRAINSFitTest_MIHAffineRotationMasks
130/246 Test #44: BRAINSFitTest_MIHAffineRotationMasks ......................... Passed 0.88 sec
Start 13: BRAINSFitTest_BSplineAnteScaleRotationRescaleHeadMasks
131/246 Test #13: BRAINSFitTest_BSplineAnteScaleRotationRescaleHeadMasks ....... Passed 3.50 sec
Start 22: BRAINSFitTest_RigidRotationMasks
132/246 Test #22: BRAINSFitTest_RigidRotationMasks ............................. Passed 3.49 sec
Start 15: BRAINSFitTest_BSplineScaleRotationRescaleHeadMasks
133/246 Test #15: BRAINSFitTest_BSplineScaleRotationRescaleHeadMasks ........... Passed 2.85 sec
Start 37: BRAINSFitTest_BSplineScaleRotationHistogramHeadMasksUShort
134/246 Test #37: BRAINSFitTest_BSplineScaleRotationHistogramHeadMasksUShort ... Passed 2.64 sec
Start 30: BRAINSFitTest_ScaleTranslationRescaleHeadMasksNoInit
135/246 Test #30: BRAINSFitTest_ScaleTranslationRescaleHeadMasksNoInit ......... Passed 3.24 sec
Start 10: BRAINSFitTest_AffineScaleNoMasks
136/246 Test #10: BRAINSFitTest_AffineScaleNoMasks ............................. Passed 2.19 sec
Start 8: BRAINSFitTest_AffineRotationNoMasks
137/246 Test #8: BRAINSFitTest_AffineRotationNoMasks .......................... Passed 2.47 sec
Start 20: BRAINSFitTest_RigidRotaRotaRotNoMasks
138/246 Test #20: BRAINSFitTest_RigidRotaRotaRotNoMasks ........................ Passed 2.47 sec
Start 5: DWIMetaDataDictionaryValidatorTest
139/246 Test #5: DWIMetaDataDictionaryValidatorTest ........................... Passed 1.27 sec
Start 7: BRAINSFitTest_AffineRotationMasks
140/246 Test #7: BRAINSFitTest_AffineRotationMasks ............................ Passed 0.81 sec
Start 17: BRAINSFitTest_RigidAnisotropicMasks
141/246 Test #17: BRAINSFitTest_RigidAnisotropicMasks .......................... Passed 1.23 sec
Start 6: CenterOfROIInitTest
142/246 Test #6: CenterOfROIInitTest .......................................... Passed 1.08 sec
Start 31: BRAINSFitTest_ScaleTranslationRescaleHeadMasksInit
143/246 Test #31: BRAINSFitTest_ScaleTranslationRescaleHeadMasksInit ........... Passed 1.14 sec
Start 9: BRAINSFitTest_AffineScaleMasks
144/246 Test #9: BRAINSFitTest_AffineScaleMasks ............................... Passed 0.70 sec
Start 77: BRAINSTrimForegroundInDirectionTest_T1
145/246 Test #77: BRAINSTrimForegroundInDirectionTest_T1 ....................... Passed 0.72 sec
Start 27: BRAINSFitTest_ScaleSkewVersorRotationNoMasks
146/246 Test #27: BRAINSFitTest_ScaleSkewVersorRotationNoMasks ................. Passed 1.14 sec
Start 39: BRAINSFitTest_NCAffineRotationMasks
147/246 Test #39: BRAINSFitTest_NCAffineRotationMasks .......................... Passed 1.16 sec
Start 33: BRAINSFitTest_ScaleVersorRotationNoMasks
148/246 Test #33: BRAINSFitTest_ScaleVersorRotationNoMasks ..................... Passed 0.96 sec
Start 21: BRAINSFitTest_RigidRotationHeadMasks
149/246 Test #21: BRAINSFitTest_RigidRotationHeadMasks ......................... Passed 0.72 sec
Start 24: BRAINSFitTest_RigidRotationNoMasksRiginInPlaceInterp
150/246 Test #24: BRAINSFitTest_RigidRotationNoMasksRiginInPlaceInterp ......... Passed 0.77 sec
Start 42: BRAINSFitTest_MSEAffineRotationMasks
151/246 Test #42: BRAINSFitTest_MSEAffineRotationMasks ......................... Passed 0.63 sec
Start 45: BRAINSFitTest_MIHScaleSkewVersorRotationMasks
152/246 Test #45: BRAINSFitTest_MIHScaleSkewVersorRotationMasks ................ Passed 0.25 sec
Start 28: BRAINSFitTest_ScaleSkewVersorScaleMasks
153/246 Test #28: BRAINSFitTest_ScaleSkewVersorScaleMasks ...................... Passed 0.43 sec
Start 52: BRAINSROIAutoTest_GenerateBrain_seg
154/246 Test #52: BRAINSROIAutoTest_GenerateBrain_seg .......................... Passed 0.22 sec
Start 26: BRAINSFitTest_ScaleSkewVersorRotationMasks
155/246 Test #26: BRAINSFitTest_ScaleSkewVersorRotationMasks ................... Passed 0.43 sec
Start 35: BRAINSFitTest_ScaleVersorScaleNoMasks
156/246 Test #35: BRAINSFitTest_ScaleVersorScaleNoMasks ........................ Passed 0.59 sec
Start 34: BRAINSFitTest_ScaleVersorScaleMasks
157/246 Test #34: BRAINSFitTest_ScaleVersorScaleMasks .......................... Passed 0.40 sec
Start 29: BRAINSFitTest_ScaleSkewVersorScaleNoMasks
158/246 Test #29: BRAINSFitTest_ScaleSkewVersorScaleNoMasks .................... Passed 0.50 sec
Start 113: ImageCalculator2DTest1
159/246 Test #113: ImageCalculator2DTest1 ....................................... Passed 0.10 sec
Start 32: BRAINSFitTest_ScaleVersorRotationMasks
160/246 Test #32: BRAINSFitTest_ScaleVersorRotationMasks ....................... Passed 0.32 sec
Start 40: BRAINSFitTest_NCScaleSkewVersorRotationMasks
161/246 Test #40: BRAINSFitTest_NCScaleSkewVersorRotationMasks ................. Passed 0.54 sec
Start 46: ValidateBRAINSResampleTest4_nii
162/246 Test #46: ValidateBRAINSResampleTest4_nii .............................. Passed 0.12 sec
Start 66: compare_png
163/246 Test #66: compare_png .................................................. Passed 0.09 sec
Start 12: BRAINSFitTest_AffineTranslationNoMasks
164/246 Test #12: BRAINSFitTest_AffineTranslationNoMasks ....................... Passed 0.50 sec
Start 43: BRAINSFitTest_MSEScaleSkewVersorRotationMasks
165/246 Test #43: BRAINSFitTest_MSEScaleSkewVersorRotationMasks ................ Passed 0.38 sec
Start 11: BRAINSFitTest_AffineTranslationMasks
166/246 Test #11: BRAINSFitTest_AffineTranslationMasks ......................... Passed 0.33 sec
Start 74: BCDTest_forceHoughReportFailure
167/246 Test #74: BCDTest_forceHoughReportFailure .............................. Passed 0.07 sec
Start 134: ImageCompareVersorRigidVersorRigidfloat
168/246 Test #134: ImageCompareVersorRigidVersorRigidfloat ...................... Passed 0.07 sec
Start 79: chk_insertMidACPCpointTest
169/246 Test #79: chk_insertMidACPCpointTest ................................... Passed 0.03 sec
Start 49: ValidateBRAINSResampleTest2_nii
170/246 Test #49: ValidateBRAINSResampleTest2_nii .............................. Passed 0.23 sec
Start 3: Slicer3LandmarkIOExceptionTest
171/246 Test #3: Slicer3LandmarkIOExceptionTest ............................... Passed 0.02 sec
Start 38: BRAINSFitTest_NCMetricBrainToItself
172/246 Test #38: BRAINSFitTest_NCMetricBrainToItself .......................... Passed 0.20 sec
Start 41: BRAINSFitTest_MSEMetricBrainToItself
173/246 Test #41: BRAINSFitTest_MSEMetricBrainToItself ......................... Passed 0.19 sec
Start 1: AverageImageFilterTest
174/246 Test #1: AverageImageFilterTest ....................................... Passed 0.02 sec
Start 48: ValidateBRAINSResampleTest1_nii
175/246 Test #48: ValidateBRAINSResampleTest1_nii .............................. Passed 0.10 sec
Start 47: ValidateBRAINSResampleTest7_nii
176/246 Test #47: ValidateBRAINSResampleTest7_nii .............................. Passed 0.12 sec
Start 2: PrettyPrintTableTest
177/246 Test #2: PrettyPrintTableTest ......................................... Passed 0.01 sec
Start 136: BadConvertVersorRigidToScaleVersorInfloat
178/246 Test #136: BadConvertVersorRigidToScaleVersorInfloat .................... Passed 0.09 sec
Start 56: ccvnt_to_bmp_unsigned_char
179/246 Test #56: ccvnt_to_bmp_unsigned_char ................................... Passed 0.02 sec
Start 117: ImageCalculator2DHisteqTest
180/246 Test #117: ImageCalculator2DHisteqTest .................................. Passed 0.05 sec
Start 123: ImageCalculator3DTest1
181/246 Test #123: ImageCalculator3DTest1 ....................................... Passed 0.05 sec
Start 159: BadConvertVersorRigidToScaleVersorIndouble
182/246 Test #159: BadConvertVersorRigidToScaleVersorIndouble ................... Passed 0.02 sec
Start 223: BadConvertScaleSkewVersorToAffineIndouble
183/246 Test #223: BadConvertScaleSkewVersorToAffineIndouble .................... Passed 0.02 sec
Start 70: compare_gipl
184/246 Test #70: compare_gipl ................................................. Passed 0.02 sec
Start 82: BCD_HELP_TEST
185/246 Test #82: BCD_HELP_TEST ................................................ Passed 0.02 sec
Start 121: ImageCalc2DTestSquare
186/246 Test #121: ImageCalc2DTestSquare ........................................ Passed 0.03 sec
Start 120: ImageCalc2DAvg
187/246 Test #120: ImageCalc2DAvg ............................................... Passed 0.03 sec
Start 68: compare_analyze75
188/246 Test #68: compare_analyze75 ............................................ Passed 0.02 sec
Start 111: chk_a_BCDTestForLandmarkCompare
189/246 Test #111: chk_a_BCDTestForLandmarkCompare .............................. Passed 0.02 sec
Start 75: BCDTest_inputVolumeError
190/246 Test #75: BCDTest_inputVolumeError ..................................... Passed 0.02 sec
Start 114: ImageCalculator2DGaussianTest
191/246 Test #114: ImageCalculator2DGaussianTest ................................ Passed 0.03 sec
Start 76: BCDTest_LLSModelError
192/246 Test #76: BCDTest_LLSModelError ........................................ Passed 0.02 sec
Start 67: compare_tiff
193/246 Test #67: compare_tiff ................................................. Passed 0.02 sec
Start 115: ImageCalculator2DTest2
194/246 Test #115: ImageCalculator2DTest2 ....................................... Passed 0.03 sec
Start 126: ImageCalc3DTestODiv
195/246 Test #126: ImageCalc3DTestODiv .......................................... Passed 0.03 sec
Start 127: ImageCalc3DTestIDiv
196/246 Test #127: ImageCalc3DTestIDiv .......................................... Passed 0.03 sec
Start 116: ImageCalculator2DTest3
197/246 Test #116: ImageCalculator2DTest3 ....................................... Passed 0.02 sec
Start 69: compare_nrrd_float
198/246 Test #69: compare_nrrd_float ........................................... Passed 0.02 sec
Start 118: ImageCalc2DMult
199/246 Test #118: ImageCalc2DMult .............................................. Passed 0.02 sec
Start 124: ImageCalc3DTestOMult
200/246 Test #124: ImageCalc3DTestOMult ......................................... Passed 0.03 sec
Start 125: ImageCalc3DTestIMult
201/246 Test #125: ImageCalc3DTestIMult ......................................... Passed 0.03 sec
Start 129: ImageCalc2DTestOAdd
202/246 Test #129: ImageCalc2DTestOAdd .......................................... Passed 0.02 sec
Start 122: ImageCalc2DTestSquareRoot
203/246 Test #122: ImageCalc2DTestSquareRoot .................................... Passed 0.02 sec
Start 119: ImageCalc2DDiv
204/246 Test #119: ImageCalc2DDiv ............................................... Passed 0.02 sec
Start 128: ImageCalc2DTestIAdd
205/246 Test #128: ImageCalc2DTestIAdd .......................................... Passed 0.02 sec
Start 169: BadConvertVersorRigidToAffineIndouble
206/246 Test #169: BadConvertVersorRigidToAffineIndouble ........................ Passed 0.02 sec
Start 182: BadConvertScaleVersorToScaleSkewVersorInfloat
207/246 Test #182: BadConvertScaleVersorToScaleSkewVersorInfloat ................ Passed 0.02 sec
Start 214: BadConvertScaleSkewVersorToAffineInfloat
208/246 Test #214: BadConvertScaleSkewVersorToAffineInfloat ..................... Passed 0.02 sec
Start 180: ImageCompareScaleVersorScaleVersorfloat
209/246 Test #180: ImageCompareScaleVersorScaleVersorfloat ...................... Passed 0.02 sec
Start 200: BadConvertScaleVersorToScaleSkewVersorIndouble
210/246 Test #200: BadConvertScaleVersorToScaleSkewVersorIndouble ............... Passed 0.02 sec
Start 187: BadConvertScaleVersorToAffineInfloat
211/246 Test #187: BadConvertScaleVersorToAffineInfloat ......................... Passed 0.02 sec
Start 246: ImageCompareAffineDisplacementFielddouble
212/246 Test #246: ImageCompareAffineDisplacementFielddouble .................... Passed 0.02 sec
Start 212: ImageCompareScaleVersorDisplacementFielddouble
213/246 Test #212: ImageCompareScaleVersorDisplacementFielddouble ............... Passed 0.02 sec
Start 205: BadConvertScaleVersorToAffineIndouble
214/246 Test #205: BadConvertScaleVersorToAffineIndouble ........................ Passed 0.02 sec
Start 71: compare_nifti
215/246 Test #71: compare_nifti ................................................ Passed 0.02 sec
Start 234: ImageCompareAffineAffinefloat
216/246 Test #234: ImageCompareAffineAffinefloat ................................ Passed 0.02 sec
Start 221: ImageCompareScaleSkewVersorDisplacementFieldfloat
217/246 Test #221: ImageCompareScaleSkewVersorDisplacementFieldfloat ............ Passed 0.02 sec
Start 230: ImageCompareScaleSkewVersorDisplacementFielddouble
218/246 Test #230: ImageCompareScaleSkewVersorDisplacementFielddouble ........... Passed 0.02 sec
Start 146: BadConvertVersorRigidToAffineInfloat
219/246 Test #146: BadConvertVersorRigidToAffineInfloat ......................... Passed 0.02 sec
Start 164: BadConvertVersorRigidToScaleSkewVersorIndouble
220/246 Test #164: BadConvertVersorRigidToScaleSkewVersorIndouble ............... Passed 0.02 sec
Start 141: BadConvertVersorRigidToScaleSkewVersorInfloat
221/246 Test #141: BadConvertVersorRigidToScaleSkewVersorInfloat ................ Passed 0.02 sec
Start 167: ImageCompareVersorRigidScaleSkewVersordouble
222/246 Test #167: ImageCompareVersorRigidScaleSkewVersordouble ................. Passed 0.02 sec
Start 194: ImageCompareScaleVersorDisplacementFieldfloat
223/246 Test #194: ImageCompareScaleVersorDisplacementFieldfloat ................ Passed 0.02 sec
Start 208: ImageCompareScaleVersorAffinedouble
224/246 Test #208: ImageCompareScaleVersorAffinedouble .......................... Passed 0.02 sec
Start 172: ImageCompareVersorRigidAffinedouble
225/246 Test #172: ImageCompareVersorRigidAffinedouble .......................... Passed 0.02 sec
Start 190: ImageCompareScaleVersorAffinefloat
226/246 Test #190: ImageCompareScaleVersorAffinefloat ........................... Passed 0.02 sec
Start 226: ImageCompareScaleSkewVersorAffinedouble
227/246 Test #226: ImageCompareScaleSkewVersorAffinedouble ...................... Passed 0.02 sec
Start 176: ImageCompareVersorRigidDisplacementFielddouble
228/246 Test #176: ImageCompareVersorRigidDisplacementFielddouble ............... Passed 0.02 sec
Start 157: ImageCompareVersorRigidVersorRigiddouble
229/246 Test #157: ImageCompareVersorRigidVersorRigiddouble ..................... Passed 0.02 sec
Start 144: ImageCompareVersorRigidScaleSkewVersorfloat
230/246 Test #144: ImageCompareVersorRigidScaleSkewVersorfloat .................. Passed 0.02 sec
Start 139: ImageCompareVersorRigidScaleVersorfloat
231/246 Test #139: ImageCompareVersorRigidScaleVersorfloat ...................... Passed 0.02 sec
Start 153: ImageCompareVersorRigidDisplacementFieldfloat
232/246 Test #153: ImageCompareVersorRigidDisplacementFieldfloat ................ Passed 0.02 sec
Start 238: ImageCompareAffineDisplacementFieldfloat
233/246 Test #238: ImageCompareAffineDisplacementFieldfloat ..................... Passed 0.02 sec
Start 149: ImageCompareVersorRigidAffinefloat
234/246 Test #149: ImageCompareVersorRigidAffinefloat ........................... Passed 0.02 sec
Start 162: ImageCompareVersorRigidScaleVersordouble
235/246 Test #162: ImageCompareVersorRigidScaleVersordouble ..................... Passed 0.03 sec
Start 198: ImageCompareScaleVersorScaleVersordouble
236/246 Test #198: ImageCompareScaleVersorScaleVersordouble ..................... Passed 0.02 sec
Start 185: ImageCompareScaleVersorScaleSkewVersorfloat
237/246 Test #185: ImageCompareScaleVersorScaleSkewVersorfloat .................. Passed 0.02 sec
Start 242: ImageCompareAffineAffinedouble
238/246 Test #242: ImageCompareAffineAffinedouble ............................... Passed 0.02 sec
Start 217: ImageCompareScaleSkewVersorAffinefloat
239/246 Test #217: ImageCompareScaleSkewVersorAffinefloat ....................... Passed 0.02 sec
Start 203: ImageCompareScaleVersorScaleSkewVersordouble
240/246 Test #203: ImageCompareScaleVersorScaleSkewVersordouble ................. Passed 0.02 sec
Start 81: chk_landmarksConstellationAlignerTest
241/246 Test #81: chk_landmarksConstellationAlignerTest ........................ Passed 0.01 sec
242/246 Test #109: BCDTest_writeBranded2DImage .................................. Passed 1146.66 sec
243/246 Test #110: BCDTestForLandmarkCompare .................................... Passed 1120.19 sec
Start 112: chk_i_BCDTestForLandmarkCompare
244/246 Test #112: chk_i_BCDTestForLandmarkCompare .............................. Passed 0.02 sec
245/246 Test #85: BCDTest_ForceACPoint ......................................... Passed 733.01 sec
Start 86: chk_BCDTest_ForceACPoint
246/246 Test #86: chk_BCDTest_ForceACPoint ..................................... Passed 0.02 sec

100% tests passed, 0 tests failed out of 246

Total Test time (real) = 7068.10 sec

@hjmjohnson hjmjohnson marked this pull request as ready for review June 5, 2024 18:48
@hjmjohnson hjmjohnson merged commit 79e98d7 into main Jun 5, 2024
1 check passed
@hjmjohnson hjmjohnson deleted the pre-commit-m3-fixups branch June 5, 2024 18:48
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