BCD failures on Denburg T1only sample

There were 9 datasets that were failing BCD for the /Shared/nopoulos/structural/denburg_MR/REST/BAWEXPERIMENT_20170713 experiment.

Fixed: /nopoulos/structural/denburg_MR/REST/BAWEXPERIMENT_20170713/20170302_DENBURGREST_base_Results/DENBURGREST/ND141 was successfully run by manually transforming the raw T1 to get a rough ACPC alignment using Slicer Linear Transform function and cropping neck and creating this file to start over BAW with (/nopoulos/structural/denburg_MR/REST/ND141/63738316/ANONRAW/ND141_63738316_T1_fixed.nii.gz)

Continued Failures: The above procedure did not work on the following datasets to get them to complete BCD successfully and continue with successful BAW completion. The errors are broken down below with BCD commands that fail and error messages: