BUGFIX : no handling of partial Z including ED values #44
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| name: C/C++ CI | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: s-weigand/setup-conda@v1 | |
| with: | |
| activate-conda: true | |
| - name: Create conda environement | |
| run: | | |
| source `conda info --base`/etc/profile.d/conda.sh | |
| conda create -q -n build-IntaRNA -c conda-forge -c bioconda gcc_linux-64 gxx_linux-64 boost-cpp viennarna>=2.4.14 pkgconfig | |
| conda activate build-IntaRNA | |
| - name: Script | |
| run: | | |
| ##### start IntaRNA build ##### | |
| pwd | |
| # generate autotools's files | |
| bash autotools-init.sh | |
| # run configure (without boost checks) | |
| ENVPREFIX=`conda info --base`/envs/build-IntaRNA | |
| export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$ENVPREFIX/lib | |
| ./configure \ | |
| --prefix=$HOME/IntaRNA \ | |
| --with-vrna=$ENVPREFIX \ | |
| --with-boost=$ENVPREFIX \ | |
| --with-boost-libdir=$ENVPREFIX/lib \ | |
| --with-zlib=$ENVPREFIX | |
| # compile documentation | |
| # - make doxygen-doc | |
| # compile, test and install IntaRNA | |
| make -j 2 && make install | |
| make tests -j 2 | |
| ##### check IntaRNA build ##### | |
| # run installed IntaRNA with help output | |
| $HOME/IntaRNA/bin/IntaRNA -h |