feat: added blast (#103)

.github/workflows/blast-query-master.yaml

@@ -0,0 +1,29 @@
+name: blast-query-master
+run-name: blast-query-master
+
+# Build and push nolabs image using GitHub Cache API
+# Only if relevant files were changed
+
+on: workflow_dispatch
+
+jobs:
+  build:
+    permissions:
+      contents: read
+      packages: write
+
+    uses: ./.github/workflows/build-docker.yaml
+    with:
+      microservice_name: "blast-query"
+
+  push:
+    if: github.repository == 'BasedLabs/NoLabs'
+    needs: build
+
+    permissions:
+      contents: read
+      packages: write
+
+    uses: ./.github/workflows/push-docker.yaml
+    with:
+      microservice_name: "blast-query"

.github/workflows/blast-query-pr.yaml

@@ -0,0 +1,22 @@
+name: blast-query-pr
+run-name: blast-query-pr
+
+# Build and push nolabs image using GitHub Cache API
+# Only if relevant files were changed
+
+on:
+  pull_request:
+    branches:
+      - master
+    paths:
+      - 'microservices/blast_query/**'
+
+jobs:
+  build:
+    permissions:
+      contents: read
+      packages: write
+
+    uses: ./.github/workflows/build-docker.yaml
+    with:
+      microservice_name: "blast-query"

Makefile

@@ -9,7 +9,7 @@ flower:
 install-openapi-generator:
 	npm install -g openapi-typescript-codegen
 generate-client:
-	@openapi --input 'http://127.0.0.1:8000/openapi.json' --output frontend/src/api/client --client axios
+	@openapi --input 'http://127.0.0.1:8000/openapi.json' --output frontend/src/refinedApi/client --client axios
 install-mock-server:
 	npm install -g @stoplight/prism-cli
 start-mock-server:

README.md

@@ -238,6 +238,11 @@ $ docker compose up biobuddy nolabs-frontend nolabs-worker nolabs-api mongo redi
 
 Nolabs is running on GPT4 for the best performance. You can adjust the model you use in `microservices/biobuddy/biobuddy/services.py`
 
+### 6) Blast (using [this api](https://blast.ncbi.nlm.nih.gov/Blast.cgi))
+
+```shell
+docker compose up blast-query
+```
 
 ## Requirements ##
 

docker-compose.yaml

@@ -36,6 +36,16 @@ services:
     env_file:
       - microservices/esmfold_light/service/.env
 
+  blast-query:
+    image: 'ghcr.io/basedlabs/blast-query:1.0.0'
+    network_mode: host
+    command: python worker.py
+    build:
+      context: microservices/blast_query
+      dockerfile: build/Dockerfile
+    env_file:
+      - microservices/blast_query/service/.env
+
   rfdiffusion:
     image: 'ghcr.io/basedlabs/rfdiffusion:2.0.0'
     network_mode: host