add the reformulated version of Fiedler_BMCSystBiol2016 (#258) #322
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| name: Python CI | |
| # trigger | |
| on: [push, pull_request] | |
| jobs: | |
| base: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ['3.10'] | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| - name: Prepare python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Run tests from editable install | |
| run: | | |
| cd src/python | |
| pip install --upgrade pip | |
| pip install -e . | |
| pip install pytest | |
| pytest test | |
| - name: Run tests from sdist install | |
| run: | | |
| cd src/python | |
| ./build.sh | |
| pip install pytest | |
| pytest test | |
| lint: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ['3.10'] | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| - name: Prepare python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Run pre-commit hooks | |
| run: | | |
| pip install pre-commit | |
| pre-commit run --all-files |