fix Fiedler_BMCSystBiol2016 ID

Benchmarking-Initiative · Oct 8, 2024 · 23ea3cf · 23ea3cf
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diff --git a/Benchmark-Models/Fiedler_BMC2016/Fiedler_BMC2016.yaml b/Benchmark-Models/Fiedler_BMC2016/Fiedler_BMC2016.yaml
diff --git a/Benchmark-Models/Fiedler_BMCSystBiol2016/Fiedler_BMCSystBiol2016.yaml b/Benchmark-Models/Fiedler_BMCSystBiol2016/Fiedler_BMCSystBiol2016.yaml
@@ -0,0 +1,11 @@
+format_version: 1
+parameter_file: parameters_Fiedler_BMCSystBiol2016.tsv
+problems:
+- condition_files:
+  - experimentalCondition_Fiedler_BMCSystBiol2016.tsv
+  measurement_files:
+  - measurementData_Fiedler_BMCSystBiol2016.tsv
+  observable_files:
+  - observables_Fiedler_BMCSystBiol2016.tsv
+  sbml_files:
+  - model_Fiedler_BMCSystBiol2016.xml
diff --git a/...experimentalCondition_Fiedler_BMC2016.tsv → ...ntalCondition_Fiedler_BMCSystBiol2016.tsv b/...experimentalCondition_Fiedler_BMC2016.tsv → ...ntalCondition_Fiedler_BMCSystBiol2016.tsv
diff --git a/...C2016/measurementData_Fiedler_BMC2016.tsv → ...asurementData_Fiedler_BMCSystBiol2016.tsv b/...C2016/measurementData_Fiedler_BMC2016.tsv → ...asurementData_Fiedler_BMCSystBiol2016.tsv
diff --git a/...Fiedler_BMC2016/model_Fiedler_BMC2016.xml → ...iol2016/model_Fiedler_BMCSystBiol2016.xml b/...Fiedler_BMC2016/model_Fiedler_BMC2016.xml → ...iol2016/model_Fiedler_BMCSystBiol2016.xml
@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <sbml xmlns="http://www.sbml.org/sbml/level2/version4" level="2" version="4">
-  <model id="Fiedler_BMC2016" name="Fiedler_BMC2016">
+  <model id="Fiedler_BMCSystBiol2016" name="Fiedler_BMCSystBiol2016">
     <notes>
       <body xmlns="http://www.w3.org/1999/xhtml">
         <pre>PEtab implementation of the model from Fiedler et al. (2016), BMC Systems Biology volume 10, Article number: 80</pre>

diff --git a/...r_BMC2016/observables_Fiedler_BMC2016.tsv → ...6/observables_Fiedler_BMCSystBiol2016.tsv b/...r_BMC2016/observables_Fiedler_BMC2016.tsv → ...6/observables_Fiedler_BMCSystBiol2016.tsv
diff --git a/...er_BMC2016/parameters_Fiedler_BMC2016.tsv → ...16/parameters_Fiedler_BMCSystBiol2016.tsv b/...er_BMC2016/parameters_Fiedler_BMC2016.tsv → ...16/parameters_Fiedler_BMCSystBiol2016.tsv
diff --git a/...BMC2016/simulatedData_Fiedler_BMC2016.tsv → ...simulatedData_Fiedler_BMCSystBiol2016.tsv b/...BMC2016/simulatedData_Fiedler_BMC2016.tsv → ...simulatedData_Fiedler_BMCSystBiol2016.tsv
diff --git a/README.md b/README.md
@@ -20,7 +20,7 @@ Contributions to the collection are very welcome. Please see [CONTRIBUTING.md](C
 | [Chen_MSB2009](Benchmark-Models/Chen_MSB2009/)                                               |            4 |                    155 |        0 |                  0 |                   0 |            120 |             3 | normal                  |                                   |       500 | [\[1\]](http://identifiers.org/doi/10.1038/msb.2008.74)                                                                                                                                    | [\[1\]](https://sbml4humans.de/model_url?url=https://raw.githubusercontent.com/Benchmarking-Initiative/Benchmark-Models-PEtab/master/Benchmark-Models/Chen_MSB2009/model_Chen_MSB2009.xml)                                               |
 | [Crauste_CellSystems2017](Benchmark-Models/Crauste_CellSystems2017/)                         |            1 |                     12 |        0 |                  0 |                   0 |             21 |             4 | normal                  |                                   |         5 | [\[1\]](http://identifiers.org/doi/10.1016/j.cels.2017.01.014)                                                                                                                             | [\[1\]](https://sbml4humans.de/model_url?url=https://raw.githubusercontent.com/Benchmarking-Initiative/Benchmark-Models-PEtab/master/Benchmark-Models/Crauste_CellSystems2017/model_Crauste_CellSystems2017.xml)                         |
 | [Elowitz_Nature2000](Benchmark-Models/Elowitz_Nature2000/)                                   |            1 |                     21 |        0 |                  0 |                   0 |             58 |             1 | log10-normal            |                                   |         8 | [\[1\]](http://identifiers.org/doi/10.1038/35002125)                                                                                                                                       | [\[1\]](https://sbml4humans.de/model_url?url=https://raw.githubusercontent.com/Benchmarking-Initiative/Benchmark-Models-PEtab/master/Benchmark-Models/Elowitz_Nature2000/model_Elowitz_Nature2000.xml)                                   |
-| [Fiedler_BMC2016](Benchmark-Models/Fiedler_BMC2016/)                                         |            3 |                     22 |        0 |                  0 |                   0 |             72 |             2 | normal                  |                                   |         6 | [\[1\]](http://identifiers.org/doi/10.1186/s12918-016-0319-7)                                                                                                                              | [\[1\]](https://sbml4humans.de/model_url?url=https://raw.githubusercontent.com/Benchmarking-Initiative/Benchmark-Models-PEtab/master/Benchmark-Models/Fiedler_BMC2016/model_Fiedler_BMC2016.xml)                                         |
+| [Fiedler_BMCSystBiol2016](Benchmark-Models/Fiedler_BMCSystBiol2016/)                                         |            3 |                     22 |        0 |                  0 |                   0 |             72 |             2 | normal                  |                                   |         6 | [\[1\]](http://identifiers.org/doi/10.1186/s12918-016-0319-7)                                                                                                                              | [\[1\]](https://sbml4humans.de/model_url?url=https://raw.githubusercontent.com/Benchmarking-Initiative/Benchmark-Models-PEtab/master/Benchmark-Models/Fiedler_BMCSystBiol2016/model_Fiedler_BMCSystBiol2016.xml)                                         |
 | [Froehlich_CellSystems2018](Benchmark-Models/Froehlich_CellSystems2018/)                     |         9169 |                   4231 |        0 |                  0 |                9169 |           9169 |             1 | normal                  |                                   |      1396 | [\[1\]](http://identifiers.org/doi/10.1016/j.cels.2018.10.013)                                                                                                                             | [\[1\]](https://sbml4humans.de/model_url?url=https://raw.githubusercontent.com/Benchmarking-Initiative/Benchmark-Models-PEtab/master/Benchmark-Models/Froehlich_CellSystems2018/model_Froehlich_CellSystems2018.xml)                     |
 | [Fujita_SciSignal2010](Benchmark-Models/Fujita_SciSignal2010/)                               |            6 |                     19 |        0 |                  0 |                   0 |            144 |             3 | normal                  |                                   |         9 | [\[1\]](http://identifiers.org/doi/10.1126/scisignal.2000810)                                                                                                                              | [\[1\]](https://sbml4humans.de/model_url?url=https://raw.githubusercontent.com/Benchmarking-Initiative/Benchmark-Models-PEtab/master/Benchmark-Models/Fujita_SciSignal2010/model_Fujita_SciSignal2010.xml)                               |
 | [Giordano_Nature2020](Benchmark-Models/Giordano_Nature2020/)                                 |            1 |                     50 |        0 |                  0 |                   0 |            313 |             7 | normal                  |                                   |        13 | [\[1\]](http://identifiers.org/pubmed/32322102)                                                                                                                                            | [\[1\]](https://sbml4humans.de/model_url?url=https://raw.githubusercontent.com/Benchmarking-Initiative/Benchmark-Models-PEtab/master/Benchmark-Models/Giordano_Nature2020/Giordano_Nature2020_model.xml)                                 |