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Benchmarking-Initiative · Jan 4, 2025 · 5a7909d · 5a7909d
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diff --git a/Benchmark-Models/Fiedler_BMCSystBiol2016/reformulated/Fiedler_BMCSystBiol2016.yaml b/Benchmark-Models/Fiedler_BMCSystBiol2016/reformulated/Fiedler_BMCSystBiol2016.yaml
diff --git a/Benchmark-Models/Fiedler_BMCSystBiol2016/reformulated/Fiedler_BMCSystBiol2016_rel.yaml b/Benchmark-Models/Fiedler_BMCSystBiol2016/reformulated/Fiedler_BMCSystBiol2016_rel.yaml
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+format_version: 1
+parameter_file: parameters_Fiedler_BMCSystBiol_rel.tsv
+problems:
+- condition_files:
+  - experimentalCondition_Fiedler_BMCSystBiol_rel.tsv
+  measurement_files:
+  - measurementData_Fiedler_BMCSystBiol_rel.tsv
+  observable_files:
+  - observables_Fiedler_BMCSystBiol_rel.tsv
+  sbml_files:
+  - model_Fiedler_BMCSystBiol_rel.xml
diff --git a/...ntalCondition_Fiedler_BMCSystBiol2016.tsv → ...Condition_Fiedler_BMCSystBiol2016_rel.tsv b/...ntalCondition_Fiedler_BMCSystBiol2016.tsv → ...Condition_Fiedler_BMCSystBiol2016_rel.tsv
diff --git a/...asurementData_Fiedler_BMCSystBiol2016.tsv → ...ementData_Fiedler_BMCSystBiol2016_rel.tsv b/...asurementData_Fiedler_BMCSystBiol2016.tsv → ...ementData_Fiedler_BMCSystBiol2016_rel.tsv
diff --git a/...mulated/model_Fiedler_BMCSystBiol2016.xml → ...ted/model_Fiedler_BMCSystBiol2016_rel.xml b/...mulated/model_Fiedler_BMCSystBiol2016.xml → ...ted/model_Fiedler_BMCSystBiol2016_rel.xml
@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:layout="http://www.sbml.org/sbml/level3/version1/layout/version1" xmlns:render="http://www.sbml.org/sbml/level3/version1/render/version1" level="3" version="1" layout:required="false" render:required="false">
-  <model metaid="COPASI0" id="Fiedler_BMCSystBiol2016" name="Fiedler_BMCSystBiol2016" substanceUnits="substance" timeUnits="time" volumeUnits="volume" areaUnits="area" lengthUnits="length" extentUnits="substance">
+  <model metaid="COPASI0" id="Fiedler_BMCSystBiol2016_rel" name="Fiedler_BMCSystBiol2016_rel" substanceUnits="substance" timeUnits="time" volumeUnits="volume" areaUnits="area" lengthUnits="length" extentUnits="substance">
     <annotation>
       <COPASI xmlns="http://www.copasi.org/static/sbml">
         <rdf:RDF xmlns:dcterms="http://purl.org/dc/terms/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">

diff --git a/...d/observables_Fiedler_BMCSystBiol2016.tsv → ...servables_Fiedler_BMCSystBiol2016_rel.tsv b/...d/observables_Fiedler_BMCSystBiol2016.tsv → ...servables_Fiedler_BMCSystBiol2016_rel.tsv
diff --git a/...ed/parameters_Fiedler_BMCSystBiol2016.tsv → ...arameters_Fiedler_BMCSystBiol2016_rel.tsv b/...ed/parameters_Fiedler_BMCSystBiol2016.tsv → ...arameters_Fiedler_BMCSystBiol2016_rel.tsv
diff --git a/...ark-Models/Fiedler_BMCSystBiol2016/visualizationSpecification_Fiedler_BMCSystBiol2016.tsv b/...ark-Models/Fiedler_BMCSystBiol2016/visualizationSpecification_Fiedler_BMCSystBiol2016.tsv
@@ -0,0 +1,7 @@
+plotId	plotName	plotTypeSimulation	plotTypeData	xLabel	yValues	yLabel	datasetId
+pMek_control	pMek - control	LinePlot	replicate	time [h]	pMek	pMek	control
+pMek_Sorafenib	pMek - 5 muM Sorafenib	LinePlot	replicate	time [h]	pMek	pMek	Sorafenib
+pMek_UO126	pMek - 30 muM UO126	LinePlot	replicate	time [h]	pMek	pMek	UO126
+pErk_control	pErk - control	LinePlot	replicate	time [h]	pErk	pErk	control
+pErk_Sorafenib	pErk - 5 muM Sorafenib	LinePlot	replicate	time [h]	pErk	pErk	Sorafenib
+pErk_UO126	pErk - 30 muM UO126	LinePlot	replicate	time [h]	pErk	pErk	UO126