diff --git a/Benchmark-Models/Fiedler_BMCSystBiol2016/reformulated/Fiedler_BMCSystBiol2016.yaml b/Benchmark-Models/Fiedler_BMCSystBiol2016/reformulated/Fiedler_BMCSystBiol2016.yaml deleted file mode 100644 index 9561aa9..0000000 --- a/Benchmark-Models/Fiedler_BMCSystBiol2016/reformulated/Fiedler_BMCSystBiol2016.yaml +++ /dev/null @@ -1,11 +0,0 @@ -format_version: 1 -parameter_file: parameters_Fiedler_BMCSystBiol2016.tsv -problems: -- condition_files: - - experimentalCondition_Fiedler_BMCSystBiol2016.tsv - measurement_files: - - measurementData_Fiedler_BMCSystBiol2016.tsv - observable_files: - - observables_Fiedler_BMCSystBiol2016.tsv - sbml_files: - - model_Fiedler_BMCSystBiol2016.xml diff --git a/Benchmark-Models/Fiedler_BMCSystBiol2016/reformulated/Fiedler_BMCSystBiol2016_rel.yaml b/Benchmark-Models/Fiedler_BMCSystBiol2016/reformulated/Fiedler_BMCSystBiol2016_rel.yaml new file mode 100644 index 0000000..e7c8468 --- /dev/null +++ b/Benchmark-Models/Fiedler_BMCSystBiol2016/reformulated/Fiedler_BMCSystBiol2016_rel.yaml @@ -0,0 +1,11 @@ +format_version: 1 +parameter_file: parameters_Fiedler_BMCSystBiol_rel.tsv +problems: +- condition_files: + - experimentalCondition_Fiedler_BMCSystBiol_rel.tsv + measurement_files: + - measurementData_Fiedler_BMCSystBiol_rel.tsv + observable_files: + - observables_Fiedler_BMCSystBiol_rel.tsv + sbml_files: + - model_Fiedler_BMCSystBiol_rel.xml diff --git a/Benchmark-Models/Fiedler_BMCSystBiol2016/reformulated/experimentalCondition_Fiedler_BMCSystBiol2016.tsv b/Benchmark-Models/Fiedler_BMCSystBiol2016/reformulated/experimentalCondition_Fiedler_BMCSystBiol2016_rel.tsv similarity index 100% rename from Benchmark-Models/Fiedler_BMCSystBiol2016/reformulated/experimentalCondition_Fiedler_BMCSystBiol2016.tsv rename to Benchmark-Models/Fiedler_BMCSystBiol2016/reformulated/experimentalCondition_Fiedler_BMCSystBiol2016_rel.tsv diff --git a/Benchmark-Models/Fiedler_BMCSystBiol2016/reformulated/measurementData_Fiedler_BMCSystBiol2016.tsv b/Benchmark-Models/Fiedler_BMCSystBiol2016/reformulated/measurementData_Fiedler_BMCSystBiol2016_rel.tsv similarity index 100% rename from Benchmark-Models/Fiedler_BMCSystBiol2016/reformulated/measurementData_Fiedler_BMCSystBiol2016.tsv rename to Benchmark-Models/Fiedler_BMCSystBiol2016/reformulated/measurementData_Fiedler_BMCSystBiol2016_rel.tsv diff --git a/Benchmark-Models/Fiedler_BMCSystBiol2016/reformulated/model_Fiedler_BMCSystBiol2016.xml b/Benchmark-Models/Fiedler_BMCSystBiol2016/reformulated/model_Fiedler_BMCSystBiol2016_rel.xml similarity index 99% rename from Benchmark-Models/Fiedler_BMCSystBiol2016/reformulated/model_Fiedler_BMCSystBiol2016.xml rename to Benchmark-Models/Fiedler_BMCSystBiol2016/reformulated/model_Fiedler_BMCSystBiol2016_rel.xml index e5e1d64..3acfd63 100644 --- a/Benchmark-Models/Fiedler_BMCSystBiol2016/reformulated/model_Fiedler_BMCSystBiol2016.xml +++ b/Benchmark-Models/Fiedler_BMCSystBiol2016/reformulated/model_Fiedler_BMCSystBiol2016_rel.xml @@ -1,6 +1,6 @@ - + diff --git a/Benchmark-Models/Fiedler_BMCSystBiol2016/reformulated/observables_Fiedler_BMCSystBiol2016.tsv b/Benchmark-Models/Fiedler_BMCSystBiol2016/reformulated/observables_Fiedler_BMCSystBiol2016_rel.tsv similarity index 100% rename from Benchmark-Models/Fiedler_BMCSystBiol2016/reformulated/observables_Fiedler_BMCSystBiol2016.tsv rename to Benchmark-Models/Fiedler_BMCSystBiol2016/reformulated/observables_Fiedler_BMCSystBiol2016_rel.tsv diff --git a/Benchmark-Models/Fiedler_BMCSystBiol2016/reformulated/parameters_Fiedler_BMCSystBiol2016.tsv b/Benchmark-Models/Fiedler_BMCSystBiol2016/reformulated/parameters_Fiedler_BMCSystBiol2016_rel.tsv similarity index 100% rename from Benchmark-Models/Fiedler_BMCSystBiol2016/reformulated/parameters_Fiedler_BMCSystBiol2016.tsv rename to Benchmark-Models/Fiedler_BMCSystBiol2016/reformulated/parameters_Fiedler_BMCSystBiol2016_rel.tsv diff --git a/Benchmark-Models/Fiedler_BMCSystBiol2016/visualizationSpecification_Fiedler_BMCSystBiol2016.tsv b/Benchmark-Models/Fiedler_BMCSystBiol2016/visualizationSpecification_Fiedler_BMCSystBiol2016.tsv new file mode 100644 index 0000000..6ac3521 --- /dev/null +++ b/Benchmark-Models/Fiedler_BMCSystBiol2016/visualizationSpecification_Fiedler_BMCSystBiol2016.tsv @@ -0,0 +1,7 @@ +plotId plotName plotTypeSimulation plotTypeData xLabel yValues yLabel datasetId +pMek_control pMek - control LinePlot replicate time [h] pMek pMek control +pMek_Sorafenib pMek - 5 muM Sorafenib LinePlot replicate time [h] pMek pMek Sorafenib +pMek_UO126 pMek - 30 muM UO126 LinePlot replicate time [h] pMek pMek UO126 +pErk_control pErk - control LinePlot replicate time [h] pErk pErk control +pErk_Sorafenib pErk - 5 muM Sorafenib LinePlot replicate time [h] pErk pErk Sorafenib +pErk_UO126 pErk - 30 muM UO126 LinePlot replicate time [h] pErk pErk UO126