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update nominal parameters with estimated values
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Benchmark-Models/Fiedler_BMCSystBiol2016/reformulated/parameters_Fiedler_BMCSystBiol2016.tsv
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parameterId parameterName parameterScale lowerBound upperBound nominalValue estimate | ||
k11_k10 k_{1,1}/k{1,0} log10 1E-04 1E02 1 1 | ||
tau1 \tau_{1} log10 1E-04 1E02 0.242822010781068 1 | ||
tau2 \tau_{2} log10 1E-04 1E02 0.021140927521636 1 | ||
K1_ERK0 K_1/[ERK]_0 log10 1E-04 1E02 1 1 | ||
k11 k_{1,1} log10 1E-04 1E02 1 1 | ||
k2 k_2 log10 1E-04 1E02 1 1 | ||
K2 K_2 log10 1E-04 1E02 1 1 | ||
k3_Raf0 k_3[Raf]_0 log10 1E-04 1E02 1 1 | ||
k4 k_4 log10 1E-04 1E02 1 1 | ||
K3 K_3 log10 1E-04 1E02 1 1 | ||
k5_MEK0 k_5[MEK]_0 log10 1E-04 1E02 1 1 | ||
k6 k_6 log10 1E-04 1E02 1 1 | ||
s_pMek_rel_20140430_gel1 s_{pMek_rel,20140430,gel1} log10 1E-04 1E02 77.7404398920619 1 | ||
s_pMek_rel_20140430_gel2 s_{pMek_rel,20140430,gel2} log10 1E-04 1E02 404.217160578548 1 | ||
s_pMek_rel_20140505_gel1 s_{pMek_rel,20140505,gel1} log10 1E-04 1E02 392.45653075379 1 | ||
s_pMek_rel_20140505_gel2 s_{pMek_rel,20140505,gel2} log10 1E-04 1E02 999.992845715073 1 | ||
s_pErk_rel_20140430_gel1 s_{pErk_rel,20140430,gel1} log10 1E-04 1E02 0.369256805232789 1 | ||
s_pErk_rel_20140430_gel2 s_{pErk_rel,20140430,gel2} log10 1E-04 1E02 0.250134156378628 1 | ||
s_pErk_rel_20140505_gel1 s_{pErk_rel,20140505,gel1} log10 1E-04 1E02 8.92600078593847 1 | ||
s_pErk_rel_20140505_gel2 s_{pErk_rel,20140505,gel2} log10 1E-04 1E02 2.85637035018243 1 | ||
sigma_pMek_rel \sigma_{pMek_rel} log10 1E-10 1E02 0.000580451138215 1 | ||
sigma_pErk_rel \sigma_{pErk_rel} log10 1E-10 1E02 0.045270131337451 1 | ||
k11_k10 k_{1,1}/k{1,0} log10 1E-04 1E02 99.99999999999484 1 | ||
tau1 \tau_{1} log10 1E-04 1E02 0.00010000000000000521 1 | ||
tau2 \tau_{2} log10 1E-04 1E02 0.09288918225167495 1 | ||
K1_ERK0 K_1/[ERK]_0 log10 1E-04 1E02 0.00010000000000012946 1 | ||
k11 k_{1,1} log10 1E-04 1E02 26.142114172396994 1 | ||
k2 k_2 log10 1E-04 1E02 1.757125014844015 1 | ||
K2 K_2 log10 1E-04 1E02 1.6238964133341307 1 | ||
k3_Raf0 k_3[Raf]_0 log10 1E-04 1E02 99.99999999999488 1 | ||
k4 k_4 log10 1E-04 1E02 2.8508244620658574 1 | ||
K3 K_3 log10 1E-04 1E02 0.8147224203594344 1 | ||
k5_MEK0 k_5[MEK]_0 log10 1E-04 1E02 50.6208607696601 1 | ||
k6 k_6 log10 1E-04 1E02 3.0464232664775106 1 | ||
s_pMek_rel_20140430_gel1 s_{pMek_rel,20140430,gel1} log10 1E-04 1E02 9.113038276921857 1 | ||
s_pMek_rel_20140430_gel2 s_{pMek_rel,20140430,gel2} log10 1E-04 1E02 40.51627466624935 1 | ||
s_pMek_rel_20140505_gel1 s_{pMek_rel,20140505,gel1} log10 1E-04 1E02 46.07048727325895 1 | ||
s_pMek_rel_20140505_gel2 s_{pMek_rel,20140505,gel2} log10 1E-04 1E02 99.99999999999484 1 | ||
s_pErk_rel_20140430_gel1 s_{pErk_rel,20140430,gel1} log10 1E-04 1E02 0.4021713054528761 1 | ||
s_pErk_rel_20140430_gel2 s_{pErk_rel,20140430,gel2} log10 1E-04 1E02 0.2576150559169624 1 | ||
s_pErk_rel_20140505_gel1 s_{pErk_rel,20140505,gel1} log10 1E-04 1E02 9.945014474175611 1 | ||
s_pErk_rel_20140505_gel2 s_{pErk_rel,20140505,gel2} log10 1E-04 1E02 2.93201266036779 1 | ||
sigma_pMek_rel \sigma_{pMek_rel} log10 1E-10 1E02 0.005555731242143642 1 | ||
sigma_pErk_rel \sigma_{pErk_rel} log10 1E-10 1E02 0.042968298321873856 1 |