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Fix bounds and scales for some parameters in Isensee_JCB2018 #132

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merged 7 commits into from
Nov 11, 2024
Merged

Fix bounds and scales for some parameters in Isensee_JCB2018 #132

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edbb78a
fix parameter scales
dilpath Aug 17, 2021
9ecffc9
Merge branch 'master' into fix_isensee
dilpath Sep 30, 2021
12beb32
Merge branch 'master' into fix_isensee
dilpath Oct 5, 2021
8b2f364
Merge branch 'master' into fix_isensee
dilpath Nov 7, 2024
a65c02e
newline
dilpath Nov 7, 2024
e4e8325
group parameters by model selection hypothesis
dilpath Nov 7, 2024
1645810
update dev packages; add README for Isensee; remove default values fr…
dilpath Nov 8, 2024
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8 changes: 4 additions & 4 deletions Benchmark-Models/Isensee_JCB2018/parameters_Isensee_JCB2018.tsv
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Original file line number Diff line number Diff line change
Expand Up @@ -3,18 +3,18 @@ AC_total AC_{total} log10 1E-05 1000 1 0
KD_Fsk KD_{Fsk} log10 1E-05 1000 14.2805171742694 1
KD_H89 KD_{H89} log10 1E-05 1000 0.048074027232332 1
KD_IBMX KD_{IBMX} log10 1E-05 1000 11.960772655864 1
KD_PDE_Csub KD_{PDE,Csub} lin -5 3 0 0
KD_PDE_Csub KD_{PDE,Csub} log10 1E-5 1E3 0 0
KD_cAMP KD_{cAMP} log10 1E-05 1000 2.85002019924967 1
PDE_total PDE_{total} log10 1E-05 1000 1 0
RII2_total RII2_{total} log10 1E-05 1000 1 0
b_Calpha_global b_{Calpha,global} log10 0.001 1000 101.662732662228 1
b_pRII_global b_{pRII,global} log10 0.001 1000 99.7184671220999 1
kdeg_cAMP kdeg_{cAMP} log10 1E-05 1000 1.00000660182181E-05 1
kdeg_cAMP_free kdeg_{cAMP,free} log10 1E-05 1000 7.38363782272545 1
kdp_AC kdp_{AC} lin -5 3 0 0
kdp_AC kdp_{AC} log10 1E-5 1E3 0 0
kf_Fsk kf_{Fsk} log10 1E-05 1000 999.999958296064 1
kf_H89 kf_{H89} log10 1E-05 1000 0.000742716621349 1
kf_PDE_Csub kf_{PDE,Csub} lin -5 3 0 0
kf_PDE_Csub kf_{PDE,Csub} log10 1E-5 1E3 0 0
kf_RII_2__RII_C_2 kf_{RII_2,RII_C_2} log10 1E-05 100000 1.26446106685121 1
kf_RII_C_2__RII_2 kf_{RII_C_2,RII_2} log10 1E-05 1000 0.018746739843535 1
kf_RII_C_2__RIIp_C_2 kf_{RII_C_2,RIIp_C_2} log10 1E-05 1000 0.022767932816744 1
Expand All @@ -27,7 +27,7 @@ ki_Rp8_Br_cAMPS_pAB ki_{Rp8,Br,cAMPS,pAB} log10 1E-05 1000 6.44560005260773 1
ki_Rp8_pCPT_cAMPS_pAB ki_{Rp8,pCPT,cAMPS,pAB} log10 1E-05 1000 9.3898794585472 1
ki_Rp_cAMPS_pAB ki_{Rp,cAMPS,pAB} log10 1E-05 1000 0.016320587381729 1
ki_Sp8_Br_cAMPS_AM ki_{Sp8,Br,cAMPS,AM} log10 1E-05 1000 0.131657936881857 1
kp_AC kp_{AC} lin -5 3 0 0
kp_AC kp_{AC} log10 1E-5 1E3 0 0
ks_AC_cAMP ks_{AC,cAMP} log10 1E-05 1000 0.423150583624568 1
rel_open rel_{open} log10 1E-05 1 0.232684484588385 1
s_Calpha_global s_{Calpha,global} log10 1000 3162.27766016838 1758.15501421399 1
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