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hPDB-examples.cabal
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hPDB-examples.cabal
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name: hPDB-examples
version: 1.5.0.0
synopsis: Examples for hPDB library
stability: stable
homepage: https://github.com/BioHaskell/hPDB-examples
package-url: http://hackage.haskell.org/package/hPDB
description: Examples for handling Protein Data Bank file format.
category: Bioinformatics
license: BSD3
license-file: LICENSE
author: Michal J. Gajda
copyright: Copyright by Michal J. Gajda '2009-'2013
maintainer: mjgajda@googlemail.com
bug-reports: mailto:mjgajda@googlemail.com
build-type: Simple
cabal-version: >=1.8
tested-with: GHC==7.10.3,GHC==8.0.1,GHC==8.2.2
--data-files: 1CRN.pdb, 1HTQ.pdb, 3JYV.pdb
extra-source-files: README.md INSTALL AUTHORS
source-repository head
type: git
location: https://github.com/BioHaskell/hPDB-examples.git
Executable PDB2Fasta
main-is: examples/PDB2Fasta.hs
ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N
build-depends: base>=4.0, base <4.12, bytestring, ghc-prim, directory, mtl, template-haskell, vector, linear, containers, deepseq, QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.5, iterable >=3.0
other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls MagicHash
Executable ShiftToCenter
main-is: examples/ShiftToCenter.hs
ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N
build-depends: base>=4.0, base<4.12, ghc-prim, directory, mtl, template-haskell, vector, linear, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.5, bytestring, iterable >=1.0
other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls MagicHash
Executable CleanPDB
main-is: examples/CleanPDB.hs
ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N
build-depends: base>=4.0, base <4.12, bytestring, ghc-prim, directory, mtl, template-haskell, vector, linear, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.5, iterable >=1.0
other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls MagicHash
Executable SplitModels
main-is: examples/SplitModels.hs
ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N
build-depends: base>=4.0, base <4.12, ghc-prim, directory, mtl, template-haskell, vector, linear, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.5, bytestring, iterable >=1.0
other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls MagicHash
Executable CanonicalAxes
main-is: examples/CanonicalAxes.hs
ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N
Build-depends: base>=4.0, base <4.12, bytestring, ghc-prim, directory, mtl, template-haskell, vector, linear, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.5, iterable >=1.0
other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls MagicHash
Executable PrintEvents
Main-is: tests/PrintEvents.hs
ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N
Build-depends: base>=4.0, base <4.12, bytestring, ghc-prim, directory, mtl, template-haskell, vector, linear, containers, deepseq, QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.5, iterable >=1.0
other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls
Executable PrintStructureObject
ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N
Build-depends: base>=4.0, base <4.12, bytestring, ghc-prim, directory, mtl, template-haskell, vector, linear, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.5, iterable >=1.0
Main-is: tests/PrintStructureObject.hs
other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls
Executable Rg
main-is: examples/Rg.hs
ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N
-fsimpl-tick-factor=150
-- ^ To avoid difficulties with GHC 7.10.1:
-- https://ghc.haskell.org/trac/ghc/ticket/10565
Build-depends: base>=4.0, base <4.12, ghc-prim, bytestring, directory, mtl, template-haskell, vector, linear, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, hPDB >= 1.5, iterable >=1.0
other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls
Executable StericClashCheck
main-is: examples/StericClashCheck.hs
ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N
Build-Depends: base>=4.0, base<4.12, bytestring, ghc-prim, directory, mtl, template-haskell, vector, linear, containers, deepseq, Octree >= 0.5, QuickCheck, text, hPDB >= 1.5, iterable >=1.0
other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls
-- if flag(haveOpenGL) -- why can't we make it conditionally available?
Executable Viewer
main-is: examples/Viewer.hs
ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts -with-rtsopts=-N
Build-depends: base>=4.0, base <4.12, ghc-prim, directory, mtl, template-haskell, vector, linear, containers, deepseq,QuickCheck >= 2.5.0.0, text>=0.11.1.13, OpenGL, GLUT, hPDB >= 1.5, bytestring, iterable >=1.0
other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls MagicHash
test-suite ParserPerformance
main-is: tests/TestParser.hs
type: exitcode-stdio-1.0
ghc-options: -fspec-constr-count=4 -O3 -threaded -rtsopts "-with-rtsopts=-N -t"
Build-depends: base>=4.0, base <4.12, ghc-prim, directory, mtl, template-haskell, vector, linear, containers, deepseq, text>=0.11.1.13, hPDB >= 1.5, bytestring, iterable >=1.0, IfElse >= 0.80, process >= 1.0, time >= 1.2
other-extensions: ScopedTypeVariables OverloadedStrings BangPatterns NoMonomorphismRestriction EmptyDataDecls MagicHash