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CHANGELOG.md

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Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog and this project adheres to Semantic Versioning.

0.2.2 - 2023-01-28

Fixed

  • Haplotype validation (#36/#37)

0.2.1 - 2023-01-11

Added

  • translate functionality for Haplotypes (#31)
  • More informative errors when constructing invalid Haplotypes (#34)

0.2.0 - 2023-01-10

Added

  • Tutorial-type documentation (#28)
  • Base.isless implementation for Edit and Variation (#32)

Changed

  • Code now follows Blue style (#28)
  • 💣 [BREAKING] Public and private API defined based on Blue style guidelines (#28)
  • 💣 [BREAKING] Renamed type Variant to Haplotype (#20/#29)
  • 💣 [BREAKING] Refactored reconstruct function to use Haplotype's reference sequence (#30)

Removed

  • Windows and MacOS CI tests (#28)

0.1.4 - 2022-12-17

Fixed

  • Soft clips at end of alignment causing invalid Variants (#25/#26)

0.1.3 - 2022-11-22

Changed

  • Variations getter now returns type-parameterized vector (#23)

0.1.2 - 2022-10-04

Changed

  • Updated dependency compats (#21)
    • BioAlignments: 2 -> 2,3
    • BioSequences: 2 -> 2,3
    • BioSymbols: 4 -> 4,5

0.1.1 - 2022-07-21

Added

  • Constructor for Variant based on Variations (#18)

0.1.0 - 2022-07-14

Added

  • Mutation types (Substitution, Deletion, Insertion)
  • Variant type to store groups of mutations together
  • Variation type to store and compare individual mutations
  • reconstruct! function to build mutated sequences from Variants
  • Variant constructor to automatically detect mutations from a BioAlignments.PairwiseAlignment
  • Methods to get reference and alternate bases from a Variation